RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 NDUFC2O95298 119 aa9.28□□□□□ -0.92
RTN3-210ENST00000540798 WFDC10BQ8IUB3 73 aa9.28□□□□□ -0.92
RTN3-210ENST00000540798 KRTAP26-1Q6PEX3 210 aa9.27□□□□□ -0.92
RTN3-210ENST00000540798 MUC7Q8TAX7 377 aa9.27□□□□□ -0.92
RTN3-210ENST00000540798 DNHD1Q96M86 4753 aa9.27□□□□□ -0.93
RTN3-210ENST00000540798 NANOS2P60321 138 aaKnown RBP9.27□□□□□ -0.93
RTN3-210ENST00000540798 SPAG11BQ08648 103 aa9.27□□□□□ -0.93
RTN3-210ENST00000540798 ESRGQ1W209 222 aa9.26□□□□□ -0.93
RTN3-210ENST00000540798 GVQW2A0A096LPI5 108 aaPredicted RBP9.26□□□□□ -0.93
RTN3-210ENST00000540798 UQCRQO14949 82 aa9.26□□□□□ -0.93
RTN3-210ENST00000540798 C11orf45Q8TAV5 145 aa9.26□□□□□ -0.93
RTN3-210ENST00000540798 C1orf43Q9BWL3 253 aa9.26□□□□□ -0.93
RTN3-210ENST00000540798 C9orf116Q5BN46 136 aaPredicted RBP9.25□□□□□ -0.93
RTN3-210ENST00000540798 C10orf25Q5T742 122 aa9.25□□□□□ -0.93
RTN3-210ENST00000540798 C6orf223Q8N319 242 aa9.25□□□□□ -0.93
RTN3-210ENST00000540798 LINC00526Q96FQ7 95 aa9.25□□□□□ -0.93
RTN3-210ENST00000540798 Q5XG85 94 aa9.25□□□□□ -0.93
RTN3-210ENST00000540798 DEFB131BA0A096LNP1 70 aa9.25□□□□□ -0.93
RTN3-210ENST00000540798 H0YGX0 51 aa9.25□□□□□ -0.93
RTN3-210ENST00000540798 C22orf24Q9Y442 160 aa9.25□□□□□ -0.93
RTN3-210ENST00000540798 A0A1B0GX51 115 aa9.24□□□□□ -0.93
RTN3-210ENST00000540798 UNQ6190/PRO20217Q6UXQ8 127 aa9.24□□□□□ -0.93
RTN3-210ENST00000540798 SMCR5Q8TEV8 140 aa9.24□□□□□ -0.93
RTN3-210ENST00000540798 TM2D3Q9BRN9 247 aa9.24□□□□□ -0.93
RTN3-210ENST00000540798 TRBV7-7A0A0K0K1E9 115 aa9.23□□□□□ -0.93
RTN3-210ENST00000540798 KRTAP21-3Q3LHN1 58 aa9.23□□□□□ -0.93
RTN3-210ENST00000540798 HUWE1Q7Z6Z7 4374 aaKnown RBP9.23□□□□□ -0.93
RTN3-210ENST00000540798 Q8NDZ9 215 aa9.22□□□□□ -0.93
RTN3-210ENST00000540798 DPH3Q96FX2 82 aa9.22□□□□□ -0.93
RTN3-210ENST00000540798 LINC01556Q5JQF7 62 aa9.22□□□□□ -0.93
RTN3-210ENST00000540798 A0A087WYN8 130 aa9.21□□□□□ -0.93
RTN3-210ENST00000540798 K7EIL1 84 aa9.2□□□□□ -0.94
RTN3-210ENST00000540798 BAALC-AS2P0C853 105 aa9.2□□□□□ -0.94
RTN3-210ENST00000540798 PRR3P79522 188 aaKnown RBP9.2□□□□□ -0.94
RTN3-210ENST00000540798 C6orf48Q9UBA6 75 aa9.2□□□□□ -0.94
RTN3-210ENST00000540798 FAM240AA0A1B0GVK7 77 aa9.19□□□□□ -0.94
RTN3-210ENST00000540798 COX7CP15954 63 aa9.19□□□□□ -0.94
RTN3-210ENST00000540798 LINC00336Q6ZUF6 198 aa9.19□□□□□ -0.94
RTN3-210ENST00000540798 C2orf48Q96LS8 159 aa9.18□□□□□ -0.94
RTN3-210ENST00000540798 DNAH1Q9P2D7 4330 aa9.18□□□□□ -0.94
RTN3-210ENST00000540798 TRAV10A0A0B4J240 114 aa9.18□□□□□ -0.94
RTN3-210ENST00000540798 DNAH10OSP0CZ25 163 aa9.18□□□□□ -0.94
RTN3-210ENST00000540798 C15orf56Q8N910 161 aa9.18□□□□□ -0.94
RTN3-210ENST00000540798 Q9HAA7 133 aa9.18□□□□□ -0.94
RTN3-210ENST00000540798 LINC00167Q96N53 147 aa9.17□□□□□ -0.94
RTN3-210ENST00000540798 F8WDY8 70 aa9.17□□□□□ -0.94
RTN3-210ENST00000540798 PRB2P02812 416 aaPredicted RBP9.17□□□□□ -0.94
RTN3-210ENST00000540798 RPS28P62857 69 aaKnown RBP9.16□□□□□ -0.94
RTN3-210ENST00000540798 MRAPQ8TCY5 172 aa9.15□□□□□ -0.94
RTN3-210ENST00000540798 NBEAL1Q6ZS30 2694 aa9.15□□□□□ -0.94
RTN3-210ENST00000540798 NOTCH1P46531 2555 aa9.15□□□□□ -0.94
RTN3-210ENST00000540798 NCR3O14931 201 aa9.14□□□□□ -0.95
RTN3-210ENST00000540798 LECT2O14960 151 aa9.14□□□□□ -0.95
RTN3-210ENST00000540798 DNAL4O96015 105 aa9.14□□□□□ -0.95
RTN3-210ENST00000540798 IGLV6-57P01721 117 aa9.14□□□□□ -0.95
RTN3-210ENST00000540798 SEC61GP60059 68 aa9.14□□□□□ -0.95
RTN3-210ENST00000540798 OBSCN-AS1Q96MR7 158 aa9.14□□□□□ -0.95
RTN3-210ENST00000540798 CRYGAP11844 174 aa9.14□□□□□ -0.95
RTN3-210ENST00000540798 ZNF561-AS1K7EIQ3 104 aa9.13□□□□□ -0.95
RTN3-210ENST00000540798 A0A0U1RQV1 116 aa9.13□□□□□ -0.95
RTN3-210ENST00000540798 HIGD2BQ4VC39 106 aa9.13□□□□□ -0.95
RTN3-210ENST00000540798 CAMK2N2Q96S95 79 aa9.12□□□□□ -0.95
RTN3-210ENST00000540798 LINC00588Q9Y4M8 146 aa9.12□□□□□ -0.95
RTN3-210ENST00000540798 ACYP1P07311 99 aa9.11□□□□□ -0.95
RTN3-210ENST00000540798 Q6ZRU5 148 aa9.11□□□□□ -0.95
RTN3-210ENST00000540798 Q8N814 137 aa9.11□□□□□ -0.95
RTN3-210ENST00000540798 A0A087WVE0 104 aa9.1□□□□□ -0.95
RTN3-210ENST00000540798 FAM236DA0A1B0GTK5 79 aa9.1□□□□□ -0.95
RTN3-210ENST00000540798 INAFM2P0DMQ5 153 aa9.1□□□□□ -0.95
RTN3-210ENST00000540798 FAM236CP0DP71 79 aa9.1□□□□□ -0.95
RTN3-210ENST00000540798 SDIM1Q6ZPB5 146 aa9.1□□□□□ -0.95
RTN3-210ENST00000540798 S100A7L2Q5SY68 101 aa9.1□□□□□ -0.95
RTN3-210ENST00000540798 C6orf99Q4VX62 202 aa9.09□□□□□ -0.95
RTN3-210ENST00000540798 C9orf129Q5T035 196 aaKnown RBP9.09□□□□□ -0.95
RTN3-210ENST00000540798 IGKV2D-24A0A075B6R9 120 aa9.09□□□□□ -0.95
RTN3-210ENST00000540798 ORMDL1Q9P0S3 153 aa9.09□□□□□ -0.95
RTN3-210ENST00000540798 RPL18AQ02543 176 aaKnown RBP9.08□□□□□ -0.96
RTN3-210ENST00000540798 PRO0628Q9UI54 55 aa9.08□□□□□ -0.96
RTN3-210ENST00000540798 NDUFC2-KCTD14E9PQ53 114 aa9.08□□□□□ -0.96
RTN3-210ENST00000540798 UPK3BQ9BT76 320 aa9.08□□□□□ -0.96
RTN3-210ENST00000540798 DNAH9Q9NYC9 4486 aa9.08□□□□□ -0.96
RTN3-210ENST00000540798 SLPIP03973 132 aa9.07□□□□□ -0.96
RTN3-210ENST00000540798 VPREB1P12018 145 aa9.07□□□□□ -0.96
RTN3-210ENST00000540798 XAGE1AQ9HD64 81 aa9.07□□□□□ -0.96
RTN3-210ENST00000540798 DYNC2H1Q8NCM8 4307 aaKnown RBP9.07□□□□□ -0.96
RTN3-210ENST00000540798 LINC00575Q6W349 94 aa9.07□□□□□ -0.96
RTN3-210ENST00000540798 IMUPQ9GZP8 106 aa9.07□□□□□ -0.96
RTN3-210ENST00000540798 IGKV3D-7A0A0C4DH55 119 aa9.07□□□□□ -0.96
RTN3-210ENST00000540798 TMEM258P61165 79 aa9.07□□□□□ -0.96
RTN3-210ENST00000540798 LINC00643Q86TS7 51 aa9.06□□□□□ -0.96
RTN3-210ENST00000540798 TRBV10-3A0A0K0K1G6 114 aa9.05□□□□□ -0.96
RTN3-210ENST00000540798 SYCNQ0VAF6 134 aa9.04□□□□□ -0.96
RTN3-210ENST00000540798 Q6ZRP5 223 aa9.04□□□□□ -0.96
RTN3-210ENST00000540798 TRAV23DV6A0A075B6W5 121 aa9.03□□□□□ -0.96
RTN3-210ENST00000540798 TMEM256-PLSCR3K7ERE1 68 aa9.02□□□□□ -0.96
RTN3-210ENST00000540798 TRBV7-6A0A0J9YX20 115 aa9.02□□□□□ -0.97
RTN3-210ENST00000540798 M0R378 163 aa9.02□□□□□ -0.97
RTN3-210ENST00000540798 ATOX1O00244 68 aa9.02□□□□□ -0.97
RTN3-210ENST00000540798 TLX1NBP0CAT3 122 aa9.02□□□□□ -0.97
RTN3-210ENST00000540798 COL7A1Q02388 2944 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms