RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SCXQ7RTU7 201 aa7.67□□□□□ -1.18
SYNE1-237ENST00000539504 X6R8D5 127 aa7.67□□□□□ -1.18
SYNE1-237ENST00000539504 HRCT1Q6UXD1 115 aa7.67□□□□□ -1.18
SYNE1-237ENST00000539504 KLK12Q9UKR0 248 aa7.67□□□□□ -1.18
SYNE1-237ENST00000539504 TRBV10-3A0A0K0K1G6 114 aa7.66□□□□□ -1.18
SYNE1-237ENST00000539504 LINC01547P58512 204 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-237ENST00000539504 Q6ZVQ6 151 aa7.66□□□□□ -1.18
SYNE1-237ENST00000539504 FAM236DA0A1B0GTK5 79 aa7.66□□□□□ -1.18
SYNE1-237ENST00000539504 FAM236CP0DP71 79 aa7.66□□□□□ -1.18
SYNE1-237ENST00000539504 SNURFQ9Y675 71 aa7.66□□□□□ -1.18
SYNE1-237ENST00000539504 IGHV4-28A0A0C4DH34 117 aa7.65□□□□□ -1.18
SYNE1-237ENST00000539504 LINC00612Q8N6U2 182 aa7.65□□□□□ -1.18
SYNE1-237ENST00000539504 LYPD5Q6UWN5 251 aa7.65□□□□□ -1.19
SYNE1-237ENST00000539504 AKAP9Q99996 3911 aa7.65□□□□□ -1.19
SYNE1-237ENST00000539504 APCP25054 2843 aa7.64□□□□□ -1.19
SYNE1-237ENST00000539504 SPATA3Q8NHX4 192 aa7.64□□□□□ -1.19
SYNE1-237ENST00000539504 DIRC1Q969H9 104 aa7.64□□□□□ -1.19
SYNE1-237ENST00000539504 TRAV10A0A0B4J240 114 aa7.64□□□□□ -1.19
SYNE1-237ENST00000539504 NBPF19A0A087WUL8 3843 aa7.63□□□□□ -1.19
SYNE1-237ENST00000539504 TRAV7A0A075B6U4 112 aa7.63□□□□□ -1.19
SYNE1-237ENST00000539504 LYRM9A8MSI8 78 aa7.63□□□□□ -1.19
SYNE1-237ENST00000539504 C16orf95Q9H693 158 aa7.63□□□□□ -1.19
SYNE1-237ENST00000539504 NDUFC2-KCTD14E9PQ53 114 aa7.63□□□□□ -1.19
SYNE1-237ENST00000539504 LOC110117498A0A087WWA1 95 aa7.62□□□□□ -1.19
SYNE1-237ENST00000539504 USP24Q9UPU5 2620 aa7.62□□□□□ -1.19
SYNE1-237ENST00000539504 NOTCH2Q04721 2471 aa7.62□□□□□ -1.19
SYNE1-237ENST00000539504 MUC7Q8TAX7 377 aa7.61□□□□□ -1.19
SYNE1-237ENST00000539504 ZNF469Q96JG9 3925 aaPredicted RBP7.61□□□□□ -1.19
SYNE1-237ENST00000539504 PDE6GP18545 87 aa7.61□□□□□ -1.19
SYNE1-237ENST00000539504 RMI2Q96E14 147 aa7.61□□□□□ -1.19
SYNE1-237ENST00000539504 IGLV6-57P01721 117 aa7.61□□□□□ -1.19
SYNE1-237ENST00000539504 COX7BP24311 80 aa7.61□□□□□ -1.19
SYNE1-237ENST00000539504 HIGD2BQ4VC39 106 aa7.6□□□□□ -1.19
SYNE1-237ENST00000539504 ZNF73O43830 326 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-237ENST00000539504 CELA1Q9UNI1 258 aa7.6□□□□□ -1.19
SYNE1-237ENST00000539504 A0A0J9YWU9 116 aa7.58□□□□□ -1.2
SYNE1-237ENST00000539504 F8WEM9 126 aa7.58□□□□□ -1.2
SYNE1-237ENST00000539504 H7BZZ5 65 aa7.58□□□□□ -1.2
SYNE1-237ENST00000539504 IGHV4-30-4P0DP06 118 aa7.58□□□□□ -1.2
SYNE1-237ENST00000539504 LELP1Q5T871 98 aa7.58□□□□□ -1.2
SYNE1-237ENST00000539504 Q5XG85 94 aa7.58□□□□□ -1.2
SYNE1-237ENST00000539504 CAMK2N2Q96S95 79 aa7.58□□□□□ -1.2
SYNE1-237ENST00000539504 C6orf48Q9UBA6 75 aa7.58□□□□□ -1.2
SYNE1-237ENST00000539504 APOC4P55056 127 aa7.57□□□□□ -1.2
SYNE1-237ENST00000539504 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-237ENST00000539504 CXCL6P80162 114 aa7.57□□□□□ -1.2
SYNE1-237ENST00000539504 H3BQ85 93 aa7.56□□□□□ -1.2
SYNE1-237ENST00000539504 SPART-AS1P0CW21 52 aa7.56□□□□□ -1.2
SYNE1-237ENST00000539504 TM2D3Q9BRN9 247 aa7.56□□□□□ -1.2
SYNE1-237ENST00000539504 SERP1Q9Y6X1 66 aa7.56□□□□□ -1.2
SYNE1-237ENST00000539504 UBR5O95071 2799 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-237ENST00000539504 KRTAP10-3P60369 221 aa7.56□□□□□ -1.2
SYNE1-237ENST00000539504 Q8N9L7 120 aa7.55□□□□□ -1.2
SYNE1-237ENST00000539504 BCE1O60756 84 aa7.55□□□□□ -1.2
SYNE1-237ENST00000539504 KRTAP1-1Q07627 177 aa7.55□□□□□ -1.2
SYNE1-237ENST00000539504 C9orf66Q5T8R8 295 aa7.55□□□□□ -1.2
SYNE1-237ENST00000539504 SMR3AQ99954 134 aa7.54□□□□□ -1.2
SYNE1-237ENST00000539504 DEFB105AQ8NG35 78 aa7.54□□□□□ -1.2
SYNE1-237ENST00000539504 KLKP1Q107X0 134 aa7.53□□□□□ -1.2
SYNE1-237ENST00000539504 TRBV7-4A0A0J9YYF1 115 aa7.53□□□□□ -1.2
SYNE1-237ENST00000539504 ELOF1P60002 83 aaKnown RBP7.52□□□□□ -1.21
SYNE1-237ENST00000539504 NREPQ16612 68 aa7.52□□□□□ -1.21
SYNE1-237ENST00000539504 BPY2O14599 106 aa7.51□□□□□ -1.21
SYNE1-237ENST00000539504 PRR34Q9NV39 138 aa7.51□□□□□ -1.21
SYNE1-237ENST00000539504 C3orf84H3BNL1 204 aa7.51□□□□□ -1.21
SYNE1-237ENST00000539504 MIFP14174 115 aa7.51□□□□□ -1.21
SYNE1-237ENST00000539504 GVQW2A0A096LPI5 108 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-237ENST00000539504 M0R378 163 aa7.51□□□□□ -1.21
SYNE1-237ENST00000539504 Q8NAQ8 132 aa7.51□□□□□ -1.21
SYNE1-237ENST00000539504 VPREB1P12018 145 aa7.5□□□□□ -1.21
SYNE1-237ENST00000539504 Q6ZRU5 148 aa7.5□□□□□ -1.21
SYNE1-237ENST00000539504 WFDC10BQ8IUB3 73 aa7.49□□□□□ -1.21
SYNE1-237ENST00000539504 TMEM254Q8TBM7 123 aa7.48□□□□□ -1.21
SYNE1-237ENST00000539504 ITPR2Q14571 2701 aa7.48□□□□□ -1.21
SYNE1-237ENST00000539504 VWFP04275 2813 aa7.48□□□□□ -1.21
SYNE1-237ENST00000539504 FASNP49327 2511 aaKnown RBP7.48□□□□□ -1.21
SYNE1-237ENST00000539504 SMIM26A0A096LP01 95 aa7.48□□□□□ -1.21
SYNE1-237ENST00000539504 EGFEM1PQ0D2K5 195 aa7.48□□□□□ -1.21
SYNE1-237ENST00000539504 UNC79Q9P2D8 2635 aa7.48□□□□□ -1.21
SYNE1-237ENST00000539504 NDUFC1O43677 76 aa7.47□□□□□ -1.21
SYNE1-237ENST00000539504 TRBV7-6A0A0J9YX20 115 aa7.47□□□□□ -1.21
SYNE1-237ENST00000539504 NKAPP1Q8N9T2 125 aa7.47□□□□□ -1.21
SYNE1-237ENST00000539504 IGKV2D-24A0A075B6R9 120 aa7.46□□□□□ -1.21
SYNE1-237ENST00000539504 WIPF1O43516 503 aa7.46□□□□□ -1.22
SYNE1-237ENST00000539504 LINC00528Q8N1L1 170 aa7.46□□□□□ -1.22
SYNE1-237ENST00000539504 C1orf43Q9BWL3 253 aa7.45□□□□□ -1.22
SYNE1-237ENST00000539504 LINC00474Q9P2X8 69 aa7.45□□□□□ -1.22
SYNE1-237ENST00000539504 KPRPQ5T749 579 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-237ENST00000539504 LINC00336Q6ZUF6 198 aa7.45□□□□□ -1.22
SYNE1-237ENST00000539504 ATRQ13535 2644 aa7.44□□□□□ -1.22
SYNE1-237ENST00000539504 IGKV4-1P06312 121 aa7.43□□□□□ -1.22
SYNE1-237ENST00000539504 MPLKIPQ8TAP9 179 aa7.43□□□□□ -1.22
SYNE1-237ENST00000539504 Q6ZRP5 223 aa7.43□□□□□ -1.22
SYNE1-237ENST00000539504 FP248Q71RG6 208 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-237ENST00000539504 RETNQ9HD89 108 aa7.42□□□□□ -1.22
SYNE1-237ENST00000539504 EPM2AB3EWF7 344 aa7.41□□□□□ -1.22
SYNE1-237ENST00000539504 PRYO14603 147 aa7.41□□□□□ -1.22
SYNE1-237ENST00000539504 FUSP35637 526 aaKnown RBP eCLIP7.41□□□□□ -1.22
SYNE1-237ENST00000539504 ATP5EP56381 51 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-237ENST00000539504 SYCNQ0VAF6 134 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms