RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 TRBV30A0A0K0K1B3 111 aa13.32□□□□□ -0.28
TNFRSF1A-205ENST00000534885 Q6ZRN7 208 aaPredicted RBP13.32□□□□□ -0.28
TNFRSF1A-205ENST00000534885 SYCNQ0VAF6 134 aa13.31□□□□□ -0.28
TNFRSF1A-205ENST00000534885 COPS9Q8WXC6 57 aa13.31□□□□□ -0.28
TNFRSF1A-205ENST00000534885 Q6ZR54 194 aa13.3□□□□□ -0.28
TNFRSF1A-205ENST00000534885 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.3□□□□□ -0.28
TNFRSF1A-205ENST00000534885 LOC107984156A0A0G2JMH3 177 aa13.29□□□□□ -0.28
TNFRSF1A-205ENST00000534885 LYRM7Q5U5X0 104 aa13.29□□□□□ -0.28
TNFRSF1A-205ENST00000534885 ARL17AQ8IVW1 177 aa13.29□□□□□ -0.28
TNFRSF1A-205ENST00000534885 F8WDY8 70 aa13.28□□□□□ -0.28
TNFRSF1A-205ENST00000534885 PPDPFQ9H3Y8 114 aa13.28□□□□□ -0.28
TNFRSF1A-205ENST00000534885 SND1-IT1Q9HBX3 110 aa13.28□□□□□ -0.28
TNFRSF1A-205ENST00000534885 A0A0B4J2C4 111 aa13.28□□□□□ -0.28
TNFRSF1A-205ENST00000534885 PSMB2P49721 201 aa13.28□□□□□ -0.28
TNFRSF1A-205ENST00000534885 CARD19Q96LW7 228 aa13.27□□□□□ -0.28
TNFRSF1A-205ENST00000534885 PRO1854Q9UHT4 67 aa13.27□□□□□ -0.29
TNFRSF1A-205ENST00000534885 ALMS1Q8TCU4 4167 aa13.26□□□□□ -0.29
TNFRSF1A-205ENST00000534885 LRCOL1A6NCL2 159 aa13.24□□□□□ -0.29
TNFRSF1A-205ENST00000534885 SMCPP49901 116 aaPredicted RBP13.24□□□□□ -0.29
TNFRSF1A-205ENST00000534885 DNAH2Q9P225 4427 aa13.23□□□□□ -0.29
TNFRSF1A-205ENST00000534885 TRBV20-1A0A075B6N2 111 aa13.23□□□□□ -0.29
TNFRSF1A-205ENST00000534885 NDUFC2-KCTD14E9PQ53 114 aa13.23□□□□□ -0.29
TNFRSF1A-205ENST00000534885 XAGE1AQ9HD64 81 aa13.23□□□□□ -0.29
TNFRSF1A-205ENST00000534885 DNAH6Q9C0G6 4158 aa13.22□□□□□ -0.29
TNFRSF1A-205ENST00000534885 IGKV2-28A0A075B6P5 120 aa13.22□□□□□ -0.29
TNFRSF1A-205ENST00000534885 IGKV2D-28P01615 120 aa13.22□□□□□ -0.29
TNFRSF1A-205ENST00000534885 H7C2G1 150 aa13.22□□□□□ -0.29
TNFRSF1A-205ENST00000534885 Q6ZRP5 223 aa13.22□□□□□ -0.29
TNFRSF1A-205ENST00000534885 Q8NDZ9 215 aa13.22□□□□□ -0.29
TNFRSF1A-205ENST00000534885 TCL1BO95988 128 aa13.21□□□□□ -0.29
TNFRSF1A-205ENST00000534885 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.2□□□□□ -0.3
TNFRSF1A-205ENST00000534885 GAGE2EQ4V326 116 aa13.19□□□□□ -0.3
TNFRSF1A-205ENST00000534885 LINC00337Q8N6G1 96 aa13.19□□□□□ -0.3
TNFRSF1A-205ENST00000534885 GAGE2DQ9UEU5 116 aa13.19□□□□□ -0.3
TNFRSF1A-205ENST00000534885 SCGB1C2P0DMR2 95 aa13.19□□□□□ -0.3
TNFRSF1A-205ENST00000534885 PRR3P79522 188 aaKnown RBP13.19□□□□□ -0.3
TNFRSF1A-205ENST00000534885 C14orf177Q52M58 125 aa13.19□□□□□ -0.3
TNFRSF1A-205ENST00000534885 RPL13AP40429 203 aaKnown RBP13.18□□□□□ -0.3
TNFRSF1A-205ENST00000534885 CNBPP62633 177 aaKnown RBP13.17□□□□□ -0.3
TNFRSF1A-205ENST00000534885 RPL18AQ02543 176 aaKnown RBP13.17□□□□□ -0.3
TNFRSF1A-205ENST00000534885 C1orf134Q5TEV5 83 aa13.17□□□□□ -0.3
TNFRSF1A-205ENST00000534885 NDUFC2O95298 119 aa13.16□□□□□ -0.3
TNFRSF1A-205ENST00000534885 TLX1NBP0CAT3 122 aa13.16□□□□□ -0.3
TNFRSF1A-205ENST00000534885 HYDINQ4G0P3 5121 aa13.15□□□□□ -0.3
TNFRSF1A-205ENST00000534885 Q1RN00 199 aa13.15□□□□□ -0.3
TNFRSF1A-205ENST00000534885 TEN1Q86WV5 123 aa13.14□□□□□ -0.31
TNFRSF1A-205ENST00000534885 A0A087WTM6 91 aa13.13□□□□□ -0.31
TNFRSF1A-205ENST00000534885 TRAV13-2A0A0B4J235 113 aa13.13□□□□□ -0.31
TNFRSF1A-205ENST00000534885 C9orf129Q5T035 196 aaKnown RBP13.13□□□□□ -0.31
TNFRSF1A-205ENST00000534885 PPDPFLQ8WWR9 84 aa13.13□□□□□ -0.31
TNFRSF1A-205ENST00000534885 NCR3O14931 201 aa13.12□□□□□ -0.31
TNFRSF1A-205ENST00000534885 Q8N814 137 aa13.12□□□□□ -0.31
TNFRSF1A-205ENST00000534885 OR13C6PQ8NH95 151 aa13.1□□□□□ -0.31
TNFRSF1A-205ENST00000534885 LOC107984640A0A0U1RRK4 108 aa13.09□□□□□ -0.31
TNFRSF1A-205ENST00000534885 TRIAP1O43715 76 aa13.09□□□□□ -0.31
TNFRSF1A-205ENST00000534885 GAGE2BQ13066 116 aa13.09□□□□□ -0.31
TNFRSF1A-205ENST00000534885 M0QXV9 152 aa13.09□□□□□ -0.31
TNFRSF1A-205ENST00000534885 VPREB1P12018 145 aa13.08□□□□□ -0.32
TNFRSF1A-205ENST00000534885 DNAH17Q9UFH2 4485 aa13.08□□□□□ -0.32
TNFRSF1A-205ENST00000534885 CDIP1Q9H305 208 aa13.08□□□□□ -0.32
TNFRSF1A-205ENST00000534885 SLC25A20O43772 301 aa13.07□□□□□ -0.32
TNFRSF1A-205ENST00000534885 LINC01620Q4KN68 170 aa13.07□□□□□ -0.32
TNFRSF1A-205ENST00000534885 ANKRD29Q8N6D5 301 aa13.07□□□□□ -0.32
TNFRSF1A-205ENST00000534885 FRAS1Q86XX4 4008 aa13.07□□□□□ -0.32
TNFRSF1A-205ENST00000534885 SACSQ9NZJ4 4579 aa13.06□□□□□ -0.32
TNFRSF1A-205ENST00000534885 C9JAW5 83 aa13.06□□□□□ -0.32
TNFRSF1A-205ENST00000534885 C9orf163Q8N9P6 203 aa13.06□□□□□ -0.32
TNFRSF1A-205ENST00000534885 ATXN8Q156A1 80 aa13.05□□□□□ -0.32
TNFRSF1A-205ENST00000534885 A0A096LNI7 61 aa13.04□□□□□ -0.32
TNFRSF1A-205ENST00000534885 FUSP35637 526 aaKnown RBP eCLIP13.04□□□□□ -0.32
TNFRSF1A-205ENST00000534885 SERTAD4-AS1Q5TG53 156 aa13.04□□□□□ -0.32
TNFRSF1A-205ENST00000534885 SMIM11BQ8TCY0 68 aa13.04□□□□□ -0.32
TNFRSF1A-205ENST00000534885 FAM168BA1KXE4 195 aa13.04□□□□□ -0.32
TNFRSF1A-205ENST00000534885 RTL8CO15255 209 aa13.04□□□□□ -0.32
TNFRSF1A-205ENST00000534885 TNP2Q05952 138 aa13.04□□□□□ -0.32
TNFRSF1A-205ENST00000534885 TRBV10-2A0A0K0K1G8 114 aa13.03□□□□□ -0.32
TNFRSF1A-205ENST00000534885 SS18L2Q9UHA2 77 aa13.03□□□□□ -0.32
TNFRSF1A-205ENST00000534885 TMEM126AQ9H061 195 aa13.03□□□□□ -0.32
TNFRSF1A-205ENST00000534885 IGKV2-24A0A0C4DH68 120 aa13.02□□□□□ -0.33
TNFRSF1A-205ENST00000534885 S100A7L2Q5SY68 101 aa13.02□□□□□ -0.33
TNFRSF1A-205ENST00000534885 C16orf90A8MZG2 172 aa13.01□□□□□ -0.33
TNFRSF1A-205ENST00000534885 RPL28P46779 137 aaKnown RBP13.01□□□□□ -0.33
TNFRSF1A-205ENST00000534885 KRTAP7-1Q8IUC3 87 aa13.01□□□□□ -0.33
TNFRSF1A-205ENST00000534885 LINC01600Q96MT4 127 aa13.01□□□□□ -0.33
TNFRSF1A-205ENST00000534885 HECTD4Q9Y4D8 3996 aa13□□□□□ -0.33
TNFRSF1A-205ENST00000534885 IGLV6-57P01721 117 aa13□□□□□ -0.33
TNFRSF1A-205ENST00000534885 LCE6AA0A183 80 aa13□□□□□ -0.33
TNFRSF1A-205ENST00000534885 PLA2G2DQ9UNK4 145 aa13□□□□□ -0.33
TNFRSF1A-205ENST00000534885 TRBV10-3A0A0K0K1G6 114 aa12.99□□□□□ -0.33
TNFRSF1A-205ENST00000534885 SDIM1Q6ZPB5 146 aa12.99□□□□□ -0.33
TNFRSF1A-205ENST00000534885 M0R378 163 aa12.98□□□□□ -0.33
TNFRSF1A-205ENST00000534885 COX6CP09669 75 aa12.98□□□□□ -0.33
TNFRSF1A-205ENST00000534885 CHTF8P0CG12 524 aa12.98□□□□□ -0.33
TNFRSF1A-205ENST00000534885 CLEC2BQ92478 149 aa12.98□□□□□ -0.33
TNFRSF1A-205ENST00000534885 NKAPP1Q8N9T2 125 aa12.97□□□□□ -0.33
TNFRSF1A-205ENST00000534885 XGP55808 180 aa12.97□□□□□ -0.33
TNFRSF1A-205ENST00000534885 FAM19A5Q7Z5A7 132 aaPredicted RBP12.97□□□□□ -0.33
TNFRSF1A-205ENST00000534885 MT-ATP8P03928 68 aa12.96□□□□□ -0.33
TNFRSF1A-205ENST00000534885 FAT2Q9NYQ8 4349 aa12.95□□□□□ -0.34
TNFRSF1A-205ENST00000534885 IGLV5-37A0A075B6J1 123 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms