RNA–Protein interactions for RNA: ENST00000534405.5

SMPD1-210, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,446 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-210ENST00000534405 HAMPP81172 84 aa13.24□□□□□ -0.29
SMPD1-210ENST00000534405 TOMM7Q9P0U1 55 aa13.24□□□□□ -0.29
SMPD1-210ENST00000534405 ERC2-IT1O76042 136 aa13.23□□□□□ -0.29
SMPD1-210ENST00000534405 ESRGQ1W209 222 aa13.23□□□□□ -0.29
SMPD1-210ENST00000534405 Q8N3U1 123 aa13.23□□□□□ -0.29
SMPD1-210ENST00000534405 Q6ZRU5 148 aa13.23□□□□□ -0.29
SMPD1-210ENST00000534405 IGLV1-51P01701 117 aa13.22□□□□□ -0.29
SMPD1-210ENST00000534405 TMEM254Q8TBM7 123 aa13.22□□□□□ -0.29
SMPD1-210ENST00000534405 RNASE1P07998 156 aaKnown RBP13.21□□□□□ -0.29
SMPD1-210ENST00000534405 CSNK1G2-AS1Q8NCQ2 148 aa13.21□□□□□ -0.29
SMPD1-210ENST00000534405 LAMTOR3Q9UHA4 124 aa13.21□□□□□ -0.29
SMPD1-210ENST00000534405 NANOS2P60321 138 aaKnown RBP13.21□□□□□ -0.3
SMPD1-210ENST00000534405 TRGV2A0A075B6R0 118 aa13.2□□□□□ -0.3
SMPD1-210ENST00000534405 NREPQ16612 68 aa13.2□□□□□ -0.3
SMPD1-210ENST00000534405 C16orf74Q96GX8 76 aa13.2□□□□□ -0.3
SMPD1-210ENST00000534405 M0R2N4 97 aa13.19□□□□□ -0.3
SMPD1-210ENST00000534405 ITPR2Q14571 2701 aa13.18□□□□□ -0.3
SMPD1-210ENST00000534405 C6orf223Q8N319 242 aa13.17□□□□□ -0.3
SMPD1-210ENST00000534405 ZNF561-AS1K7EIQ3 104 aa13.16□□□□□ -0.3
SMPD1-210ENST00000534405 CMC4P56277 68 aaPredicted RBP13.16□□□□□ -0.3
SMPD1-210ENST00000534405 UBE2L6O14933 153 aa13.15□□□□□ -0.3
SMPD1-210ENST00000534405 Q6ZTC4 211 aa13.14□□□□□ -0.31
SMPD1-210ENST00000534405 TRGV4A0A0C4DH28 118 aa13.13□□□□□ -0.31
SMPD1-210ENST00000534405 PRYO14603 147 aa13.13□□□□□ -0.31
SMPD1-210ENST00000534405 C9orf66Q5T8R8 295 aa13.13□□□□□ -0.31
SMPD1-210ENST00000534405 FUSP35637 526 aaKnown RBP eCLIP13.12□□□□□ -0.31
SMPD1-210ENST00000534405 IGLV4-60A0A075B6I1 120 aa13.12□□□□□ -0.31
SMPD1-210ENST00000534405 IGHV3OR16-9A0A0B4J2B5 98 aa13.12□□□□□ -0.31
SMPD1-210ENST00000534405 PDE6GP18545 87 aa13.12□□□□□ -0.31
SMPD1-210ENST00000534405 FN1P02751 2386 aaKnown RBP13.11□□□□□ -0.31
SMPD1-210ENST00000534405 IGKV3OR2-268A0A0C4DH90 116 aa13.11□□□□□ -0.31
SMPD1-210ENST00000534405 BPY2O14599 106 aa13.1□□□□□ -0.31
SMPD1-210ENST00000534405 C11orf68Q9H3H3 251 aaKnown RBP13.1□□□□□ -0.31
SMPD1-210ENST00000534405 A0A087WZ39 114 aa13.1□□□□□ -0.31
SMPD1-210ENST00000534405 KRTAP10-3P60369 221 aa13.1□□□□□ -0.31
SMPD1-210ENST00000534405 LINC00575Q6W349 94 aa13.09□□□□□ -0.31
SMPD1-210ENST00000534405 CD164Q04900 197 aa13.09□□□□□ -0.31
SMPD1-210ENST00000534405 TRBV6-8A0A0A6YYG3 113 aa13.08□□□□□ -0.32
SMPD1-210ENST00000534405 SMR3AQ99954 134 aa13.08□□□□□ -0.32
SMPD1-210ENST00000534405 Q1T7F1 81 aa13.06□□□□□ -0.32
SMPD1-210ENST00000534405 DEFB130BP0DP73 79 aa13.05□□□□□ -0.32
SMPD1-210ENST00000534405 DEFB130AP0DP74 79 aa13.05□□□□□ -0.32
SMPD1-210ENST00000534405 PRR3P79522 188 aaKnown RBP13.05□□□□□ -0.32
SMPD1-210ENST00000534405 UNC79Q9P2D8 2635 aa13.05□□□□□ -0.32
SMPD1-210ENST00000534405 HELZ2Q9BYK8 2649 aaKnown RBP13.05□□□□□ -0.32
SMPD1-210ENST00000534405 C6orf99Q4VX62 202 aa13.04□□□□□ -0.32
SMPD1-210ENST00000534405 SCXQ7RTU7 201 aa13.03□□□□□ -0.32
SMPD1-210ENST00000534405 OCR1Q9BZK8 76 aa13.03□□□□□ -0.32
SMPD1-210ENST00000534405 hDV103S1A0JD37 113 aa13.03□□□□□ -0.32
SMPD1-210ENST00000534405 HIVEP2P31629 2446 aa13.02□□□□□ -0.32
SMPD1-210ENST00000534405 FASNP49327 2511 aaKnown RBP13.02□□□□□ -0.33
SMPD1-210ENST00000534405 GCN1Q92616 2671 aaKnown RBP13.02□□□□□ -0.33
SMPD1-210ENST00000534405 MUC7Q8TAX7 377 aa13.02□□□□□ -0.33
SMPD1-210ENST00000534405 SPATA3Q8NHX4 192 aa13.01□□□□□ -0.33
SMPD1-210ENST00000534405 H3BQ85 93 aa13□□□□□ -0.33
SMPD1-210ENST00000534405 DAD1P61803 113 aa13□□□□□ -0.33
SMPD1-210ENST00000534405 Q6ZRP5 223 aa13□□□□□ -0.33
SMPD1-210ENST00000534405 NBEAL2Q6ZNJ1 2754 aa13□□□□□ -0.33
SMPD1-210ENST00000534405 LINC00612Q8N6U2 182 aa12.99□□□□□ -0.33
SMPD1-210ENST00000534405 X6R8D5 127 aa12.99□□□□□ -0.33
SMPD1-210ENST00000534405 GYPEP15421 78 aa12.98□□□□□ -0.33
SMPD1-210ENST00000534405 RETNQ9HD89 108 aa12.98□□□□□ -0.33
SMPD1-210ENST00000534405 VWFP04275 2813 aa12.98□□□□□ -0.33
SMPD1-210ENST00000534405 LINC00959A0A1B0GUT2 108 aa12.97□□□□□ -0.33
SMPD1-210ENST00000534405 CD164L2Q6UWJ8 174 aa12.97□□□□□ -0.33
SMPD1-210ENST00000534405 Q8IZM0 81 aa12.96□□□□□ -0.33
SMPD1-210ENST00000534405 HIGD2AQ9BW72 106 aa12.96□□□□□ -0.34
SMPD1-210ENST00000534405 A0A096LPF7 62 aa12.95□□□□□ -0.34
SMPD1-210ENST00000534405 J3QKU1 62 aa12.94□□□□□ -0.34
SMPD1-210ENST00000534405 IGKV4-1P06312 121 aa12.93□□□□□ -0.34
SMPD1-210ENST00000534405 CLPSL2Q6UWE3 100 aa12.93□□□□□ -0.34
SMPD1-210ENST00000534405 COX17Q14061 63 aa12.92□□□□□ -0.34
SMPD1-210ENST00000534405 Q6ZQY7 126 aa12.92□□□□□ -0.34
SMPD1-210ENST00000534405 DEFB4AO15263 64 aa12.9□□□□□ -0.34
SMPD1-210ENST00000534405 PRO0255Q9UI72 69 aa12.9□□□□□ -0.34
SMPD1-210ENST00000534405 A0A1B0GUV1 79 aa12.89□□□□□ -0.35
SMPD1-210ENST00000534405 Q8NDZ9 215 aa12.89□□□□□ -0.35
SMPD1-210ENST00000534405 C1orf64Q8NEQ6 169 aa12.89□□□□□ -0.35
SMPD1-210ENST00000534405 Q8N9L7 120 aa12.87□□□□□ -0.35
SMPD1-210ENST00000534405 KMT2BQ9UMN6 2715 aaPredicted RBP12.87□□□□□ -0.35
SMPD1-210ENST00000534405 TRAV22A0A0B4J277 110 aa12.87□□□□□ -0.35
SMPD1-210ENST00000534405 LRCOL1A6NCL2 159 aa12.87□□□□□ -0.35
SMPD1-210ENST00000534405 DEFB135Q30KP9 77 aa12.87□□□□□ -0.35
SMPD1-210ENST00000534405 NOTCH2Q04721 2471 aa12.87□□□□□ -0.35
SMPD1-210ENST00000534405 HECTD1Q9ULT8 2610 aa12.86□□□□□ -0.35
SMPD1-210ENST00000534405 PSPHP1O15172 72 aa12.86□□□□□ -0.35
SMPD1-210ENST00000534405 LCE6AA0A183 80 aa12.85□□□□□ -0.35
SMPD1-210ENST00000534405 TENM1Q9UKZ4 2725 aa12.84□□□□□ -0.35
SMPD1-210ENST00000534405 OTOGQ6ZRI0 2925 aa12.84□□□□□ -0.35
SMPD1-210ENST00000534405 COX7BP24311 80 aa12.83□□□□□ -0.35
SMPD1-210ENST00000534405 MRPL55Q7Z7F7 128 aaKnown RBP12.83□□□□□ -0.36
SMPD1-210ENST00000534405 LINC00269Q8N2A0 174 aa12.83□□□□□ -0.36
SMPD1-210ENST00000534405 LYRM9A8MSI8 78 aa12.82□□□□□ -0.36
SMPD1-210ENST00000534405 IGHV4-28A0A0C4DH34 117 aa12.81□□□□□ -0.36
SMPD1-210ENST00000534405 IGLV6-57P01721 117 aa12.81□□□□□ -0.36
SMPD1-210ENST00000534405 KIAA0087Q14695 138 aa12.81□□□□□ -0.36
SMPD1-210ENST00000534405 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.81□□□□□ -0.36
SMPD1-210ENST00000534405 INAFM1C9JVW0 142 aa12.8□□□□□ -0.36
SMPD1-210ENST00000534405 IGLV10-54A0A075B6I4 117 aa12.8□□□□□ -0.36
SMPD1-210ENST00000534405 CELA1Q9UNI1 258 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms