RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 TRAV13-1A0A0B4J241 112 aa3.54□□□□□ -1.84
CD44-237ENST00000534082 SDHAF1A6NFY7 115 aa3.54□□□□□ -1.84
CD44-237ENST00000534082 J3QR89 54 aa3.54□□□□□ -1.84
CD44-237ENST00000534082 CFC1P0CG37 223 aa3.54□□□□□ -1.84
CD44-237ENST00000534082 SUMO2P61956 95 aaKnown RBP3.54□□□□□ -1.84
CD44-237ENST00000534082 PMVKQ15126 192 aa3.54□□□□□ -1.84
CD44-237ENST00000534082 BATFQ16520 125 aa3.54□□□□□ -1.84
CD44-237ENST00000534082 PCOTHQ58A44 107 aa3.54□□□□□ -1.84
CD44-237ENST00000534082 RNASE13Q5GAN3 156 aaKnown RBP3.54□□□□□ -1.84
CD44-237ENST00000534082 COX6B2Q6YFQ2 88 aa3.54□□□□□ -1.84
CD44-237ENST00000534082 KRTAP13-1Q8IUC0 172 aa3.54□□□□□ -1.84
CD44-237ENST00000534082 PPP1R1CQ8WVI7 109 aa3.54□□□□□ -1.84
CD44-237ENST00000534082 KIR2DL4Q99706 377 aa3.54□□□□□ -1.84
CD44-237ENST00000534082 I3L3M4 83 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 HIST1H2BKO60814 126 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 HIST1H2BJP06899 126 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 HIST1H2BOP23527 126 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 HIST1H2BBP33778 126 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 UBE2AP49459 152 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 HIST1H2BDP58876 126 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 HIST1H2BCP62807 126 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 ZNF726P1Q15940 193 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 HIST2H2BEQ16778 126 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 KRTAP6-3Q3LI67 103 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 COA6Q5JTJ3 125 aaKnown RBP3.53□□□□□ -1.84
CD44-237ENST00000534082 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.53□□□□□ -1.84
CD44-237ENST00000534082 C1orf195Q5TG92 126 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 HIST1H2BHQ93079 126 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 YPEL4Q96NS1 127 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 HIST1H2BNQ99877 126 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 HIST1H2BMQ99879 126 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 TMEM242Q9NWH2 141 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 NDUFA12Q9UI09 145 aa3.53□□□□□ -1.84
CD44-237ENST00000534082 HMSDA8MTL9 139 aa3.52□□□□□ -1.85
CD44-237ENST00000534082 PLA2G10O15496 165 aa3.52□□□□□ -1.85
CD44-237ENST00000534082 LYRM1O43325 122 aa3.52□□□□□ -1.85
CD44-237ENST00000534082 SERF2P84101 59 aa3.52□□□□□ -1.85
CD44-237ENST00000534082 CD164Q04900 197 aa3.52□□□□□ -1.85
CD44-237ENST00000534082 MRPL55Q7Z7F7 128 aaKnown RBP3.52□□□□□ -1.85
CD44-237ENST00000534082 BAGE2Q86Y30 109 aa3.52□□□□□ -1.85
CD44-237ENST00000534082 CYSLTR1Q9Y271 337 aa3.52□□□□□ -1.85
CD44-237ENST00000534082 TRBV30A0A0K0K1B3 111 aa3.51□□□□□ -1.85
CD44-237ENST00000534082 CTXND1A0A1B0GTU2 59 aa3.51□□□□□ -1.85
CD44-237ENST00000534082 C7orf77A4D0Y5 90 aa3.51□□□□□ -1.85
CD44-237ENST00000534082 RPL37AP8A6NKH3 93 aa3.51□□□□□ -1.85
CD44-237ENST00000534082 F2Z2F3 143 aa3.51□□□□□ -1.85
CD44-237ENST00000534082 TEX43Q6ZNM6 134 aa3.51□□□□□ -1.85
CD44-237ENST00000534082 Q6ZUT4 128 aa3.51□□□□□ -1.85
CD44-237ENST00000534082 NRACQ8N912 160 aa3.51□□□□□ -1.85
CD44-237ENST00000534082 RNASE7Q9H1E1 156 aaKnown RBP3.51□□□□□ -1.85
CD44-237ENST00000534082 CYTL1Q9NRR1 136 aa3.51□□□□□ -1.85
CD44-237ENST00000534082 TP73-AS1Q9UF72 201 aa3.51□□□□□ -1.85
CD44-237ENST00000534082 C9JAW5 83 aa3.5□□□□□ -1.85
CD44-237ENST00000534082 FOXA3P55318 350 aaPredicted RBP3.5□□□□□ -1.85
CD44-237ENST00000534082 H2BFSP57053 126 aa3.5□□□□□ -1.85
CD44-237ENST00000534082 LYZL1Q6UWQ5 148 aa3.5□□□□□ -1.85
CD44-237ENST00000534082 C2orf82Q6UX34 121 aa3.5□□□□□ -1.85
CD44-237ENST00000534082 MBD3L1Q8WWY6 194 aa3.5□□□□□ -1.85
CD44-237ENST00000534082 TMEM18Q96B42 140 aa3.5□□□□□ -1.85
CD44-237ENST00000534082 XAGE1AQ9HD64 81 aa3.5□□□□□ -1.85
CD44-237ENST00000534082 UQCR10Q9UDW1 63 aa3.5□□□□□ -1.85
CD44-237ENST00000534082 IGHV3OR16-9A0A0B4J2B5 98 aa3.49□□□□□ -1.85
CD44-237ENST00000534082 TRBV6-5A0A0K0K1A5 114 aa3.49□□□□□ -1.85
CD44-237ENST00000534082 KIAA0087Q14695 138 aa3.49□□□□□ -1.85
CD44-237ENST00000534082 TWIST1Q15672 202 aa3.49□□□□□ -1.85
CD44-237ENST00000534082 Q8NBF4 154 aa3.49□□□□□ -1.85
CD44-237ENST00000534082 LINC00167Q96N53 147 aa3.49□□□□□ -1.85
CD44-237ENST00000534082 VAMP8Q9BV40 100 aa3.49□□□□□ -1.85
CD44-237ENST00000534082 RPS10P5Q9NQ39 176 aa3.49□□□□□ -1.85
CD44-237ENST00000534082 ZNF727A8MUV8 499 aa3.48□□□□□ -1.85
CD44-237ENST00000534082 TAX1BP3O14907 124 aa3.48□□□□□ -1.85
CD44-237ENST00000534082 SPINK1P00995 79 aa3.48□□□□□ -1.85
CD44-237ENST00000534082 PRLHP81277 87 aa3.48□□□□□ -1.85
CD44-237ENST00000534082 FAM231DQ6ZW35 169 aa3.48□□□□□ -1.85
CD44-237ENST00000534082 FAM19A2Q8N3H0 131 aa3.48□□□□□ -1.85
CD44-237ENST00000534082 ATP5LO75964 103 aa3.47□□□□□ -1.85
CD44-237ENST00000534082 SPINK8P0C7L1 97 aa3.47□□□□□ -1.85
CD44-237ENST00000534082 PNRC1Q12796 327 aaPredicted RBP3.47□□□□□ -1.85
CD44-237ENST00000534082 KRTAP20-1Q3LI63 56 aa3.47□□□□□ -1.85
CD44-237ENST00000534082 Q8N377 158 aa3.47□□□□□ -1.85
CD44-237ENST00000534082 NAA38Q9BRA0 125 aaKnown RBP3.47□□□□□ -1.85
CD44-237ENST00000534082 CNFNQ9BYD5 112 aa3.47□□□□□ -1.85
CD44-237ENST00000534082 ST20Q9HBF5 79 aa3.47□□□□□ -1.85
CD44-237ENST00000534082 TRBV27A0A0K0K1C4 114 aa3.46□□□□□ -1.86
CD44-237ENST00000534082 CCDC179H3BU77 68 aa3.46□□□□□ -1.86
CD44-237ENST00000534082 FCER1GP30273 86 aa3.46□□□□□ -1.86
CD44-237ENST00000534082 BORCS7Q96B45 105 aa3.46□□□□□ -1.86
CD44-237ENST00000534082 PLEKHB2Q96CS7 222 aa3.46□□□□□ -1.86
CD44-237ENST00000534082 IGKV2D-30A0A075B6S6 120 aa3.45□□□□□ -1.86
CD44-237ENST00000534082 FAM236DA0A1B0GTK5 79 aa3.45□□□□□ -1.86
CD44-237ENST00000534082 K7EP34 96 aa3.45□□□□□ -1.86
CD44-237ENST00000534082 PRYO14603 147 aa3.45□□□□□ -1.86
CD44-237ENST00000534082 IGLC3P0DOY3 106 aa3.45□□□□□ -1.86
CD44-237ENST00000534082 FAM236CP0DP71 79 aa3.45□□□□□ -1.86
CD44-237ENST00000534082 POLR2KP53803 58 aaKnown RBP3.45□□□□□ -1.86
CD44-237ENST00000534082 CENPWQ5EE01 88 aa3.45□□□□□ -1.86
CD44-237ENST00000534082 MEIG1Q5JSS6 88 aa3.45□□□□□ -1.86
CD44-237ENST00000534082 MRPL54Q6P161 138 aaKnown RBP3.45□□□□□ -1.86
CD44-237ENST00000534082 Q6Q795 121 aa3.45□□□□□ -1.86
CD44-237ENST00000534082 Q6ZVH6 145 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms