RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 C6orf48Q9UBA6 75 aa9.26□□□□□ -0.93
TRIM3-212ENST00000533064 EIF4EBP3O60516 100 aaPredicted RBP9.26□□□□□ -0.93
TRIM3-212ENST00000533064 SLPIP03973 132 aa9.26□□□□□ -0.93
TRIM3-212ENST00000533064 UBE2V1Q13404 147 aa9.26□□□□□ -0.93
TRIM3-212ENST00000533064 COX17Q14061 63 aa9.26□□□□□ -0.93
TRIM3-212ENST00000533064 PFN2P35080 140 aa9.25□□□□□ -0.93
TRIM3-212ENST00000533064 C9orf116Q5BN46 136 aaPredicted RBP9.25□□□□□ -0.93
TRIM3-212ENST00000533064 SOSTDC1Q6X4U4 206 aa9.25□□□□□ -0.93
TRIM3-212ENST00000533064 PRO1854Q9UHT4 67 aa9.25□□□□□ -0.93
TRIM3-212ENST00000533064 HECTD4Q9Y4D8 3996 aa9.24□□□□□ -0.93
TRIM3-212ENST00000533064 VAMP3Q15836 100 aa9.24□□□□□ -0.93
TRIM3-212ENST00000533064 NAA38Q9BRA0 125 aaKnown RBP9.24□□□□□ -0.93
TRIM3-212ENST00000533064 PGPEP1Q9NXJ5 209 aa9.24□□□□□ -0.93
TRIM3-212ENST00000533064 A0A1W2PPM0 123 aa9.23□□□□□ -0.93
TRIM3-212ENST00000533064 PKIGQ9Y2B9 76 aa9.23□□□□□ -0.93
TRIM3-212ENST00000533064 IGLV5-52A0A0A0MRZ9 124 aa9.22□□□□□ -0.93
TRIM3-212ENST00000533064 C9orf163Q8N9P6 203 aa9.22□□□□□ -0.93
TRIM3-212ENST00000533064 LOC107984640A0A0U1RRK4 108 aa9.21□□□□□ -0.93
TRIM3-212ENST00000533064 NDUFC2-KCTD14E9PQ53 114 aa9.21□□□□□ -0.93
TRIM3-212ENST00000533064 TSPAN13O95857 204 aa9.21□□□□□ -0.93
TRIM3-212ENST00000533064 FABP2P12104 132 aa9.21□□□□□ -0.93
TRIM3-212ENST00000533064 RPL18AQ02543 176 aaKnown RBP9.2□□□□□ -0.94
TRIM3-212ENST00000533064 FAT2Q9NYQ8 4349 aa9.2□□□□□ -0.94
TRIM3-212ENST00000533064 TLX1NBP0CAT3 122 aa9.2□□□□□ -0.94
TRIM3-212ENST00000533064 LOC107984156A0A0G2JMH3 177 aa9.19□□□□□ -0.94
TRIM3-212ENST00000533064 ARL17AQ8IVW1 177 aa9.19□□□□□ -0.94
TRIM3-212ENST00000533064 SND1-IT1Q9HBX3 110 aa9.19□□□□□ -0.94
TRIM3-212ENST00000533064 GAGE2EQ4V326 116 aa9.17□□□□□ -0.94
TRIM3-212ENST00000533064 Q6ZRP5 223 aa9.17□□□□□ -0.94
TRIM3-212ENST00000533064 GTF2H5Q6ZYL4 71 aa9.17□□□□□ -0.94
TRIM3-212ENST00000533064 GAGE2DQ9UEU5 116 aa9.17□□□□□ -0.94
TRIM3-212ENST00000533064 GAGE10A6NGK3 116 aa9.16□□□□□ -0.94
TRIM3-212ENST00000533064 K7EP34 96 aa9.16□□□□□ -0.94
TRIM3-212ENST00000533064 FUSP35637 526 aaKnown RBP eCLIP9.16□□□□□ -0.94
TRIM3-212ENST00000533064 KRTAP10-2P60368 255 aa9.16□□□□□ -0.94
TRIM3-212ENST00000533064 VPS25Q9BRG1 176 aa9.16□□□□□ -0.94
TRIM3-212ENST00000533064 SPCS1Q9Y6A9 102 aa9.16□□□□□ -0.94
TRIM3-212ENST00000533064 PKD1P98161 4303 aa9.16□□□□□ -0.94
TRIM3-212ENST00000533064 K7ERU9 68 aa9.16□□□□□ -0.94
TRIM3-212ENST00000533064 RPL13AP40429 203 aaKnown RBP9.16□□□□□ -0.94
TRIM3-212ENST00000533064 GAGE2BQ13066 116 aa9.16□□□□□ -0.94
TRIM3-212ENST00000533064 LINC01620Q4KN68 170 aa9.16□□□□□ -0.94
TRIM3-212ENST00000533064 DNAH11Q96DT5 4516 aa9.15□□□□□ -0.94
TRIM3-212ENST00000533064 H7C2G1 150 aa9.15□□□□□ -0.94
TRIM3-212ENST00000533064 Q1RN00 199 aa9.15□□□□□ -0.94
TRIM3-212ENST00000533064 LYRM7Q5U5X0 104 aa9.15□□□□□ -0.94
TRIM3-212ENST00000533064 TRAV13-2A0A0B4J235 113 aa9.14□□□□□ -0.95
TRIM3-212ENST00000533064 C16orf90A8MZG2 172 aa9.14□□□□□ -0.95
TRIM3-212ENST00000533064 XAGE1AQ9HD64 81 aa9.14□□□□□ -0.95
TRIM3-212ENST00000533064 RYR3Q15413 4870 aa9.14□□□□□ -0.95
TRIM3-212ENST00000533064 IGKV2-28A0A075B6P5 120 aa9.13□□□□□ -0.95
TRIM3-212ENST00000533064 IGKV2-24A0A0C4DH68 120 aa9.13□□□□□ -0.95
TRIM3-212ENST00000533064 IGKV2D-28P01615 120 aa9.13□□□□□ -0.95
TRIM3-212ENST00000533064 OCIAD2Q56VL3 154 aa9.13□□□□□ -0.95
TRIM3-212ENST00000533064 SDIM1Q6ZPB5 146 aa9.13□□□□□ -0.95
TRIM3-212ENST00000533064 LINC00474Q9P2X8 69 aa9.13□□□□□ -0.95
TRIM3-212ENST00000533064 A0A096LNI7 61 aa9.13□□□□□ -0.95
TRIM3-212ENST00000533064 NDUFC2O95298 119 aa9.13□□□□□ -0.95
TRIM3-212ENST00000533064 PSMB2P49721 201 aa9.13□□□□□ -0.95
TRIM3-212ENST00000533064 SCGB1A1P11684 91 aa9.12□□□□□ -0.95
TRIM3-212ENST00000533064 LINC00337Q8N6G1 96 aa9.11□□□□□ -0.95
TRIM3-212ENST00000533064 A0A1B0GVY2 172 aa9.1□□□□□ -0.95
TRIM3-212ENST00000533064 SCGB1C2P0DMR2 95 aa9.1□□□□□ -0.95
TRIM3-212ENST00000533064 DPH3Q96FX2 82 aa9.1□□□□□ -0.95
TRIM3-212ENST00000533064 DNAH5Q8TE73 4624 aa9.1□□□□□ -0.95
TRIM3-212ENST00000533064 TRIAP1O43715 76 aa9.1□□□□□ -0.95
TRIM3-212ENST00000533064 C9orf129Q5T035 196 aaKnown RBP9.1□□□□□ -0.95
TRIM3-212ENST00000533064 TRBV20-1A0A075B6N2 111 aa9.09□□□□□ -0.95
TRIM3-212ENST00000533064 COX6CP09669 75 aa9.08□□□□□ -0.96
TRIM3-212ENST00000533064 CHTF8P0CG12 524 aa9.08□□□□□ -0.96
TRIM3-212ENST00000533064 PKHD1P08F94 4074 aa9.07□□□□□ -0.96
TRIM3-212ENST00000533064 TCL1BO95988 128 aa9.07□□□□□ -0.96
TRIM3-212ENST00000533064 NKAPP1Q8N9T2 125 aa9.07□□□□□ -0.96
TRIM3-212ENST00000533064 H3BMG7 143 aa9.06□□□□□ -0.96
TRIM3-212ENST00000533064 Q8NDZ9 215 aa9.06□□□□□ -0.96
TRIM3-212ENST00000533064 SPACA4Q8TDM5 124 aa9.06□□□□□ -0.96
TRIM3-212ENST00000533064 PLA2G2DQ9UNK4 145 aa9.06□□□□□ -0.96
TRIM3-212ENST00000533064 RPL28P46779 137 aaKnown RBP9.05□□□□□ -0.96
TRIM3-212ENST00000533064 PRR3P79522 188 aaKnown RBP9.05□□□□□ -0.96
TRIM3-212ENST00000533064 OR13C6PQ8NH95 151 aa9.05□□□□□ -0.96
TRIM3-212ENST00000533064 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.05□□□□□ -0.96
TRIM3-212ENST00000533064 TRBV10-2A0A0K0K1G8 114 aa9.04□□□□□ -0.96
TRIM3-212ENST00000533064 FAM19A5Q7Z5A7 132 aaPredicted RBP9.04□□□□□ -0.96
TRIM3-212ENST00000533064 FAM168BA1KXE4 195 aa9.04□□□□□ -0.96
TRIM3-212ENST00000533064 VPREB1P12018 145 aa9.04□□□□□ -0.96
TRIM3-212ENST00000533064 KRTAP10-1P60331 282 aa9.04□□□□□ -0.96
TRIM3-212ENST00000533064 TMEM126AQ9H061 195 aa9.04□□□□□ -0.96
TRIM3-212ENST00000533064 PANO1I0J062 215 aa9.03□□□□□ -0.96
TRIM3-212ENST00000533064 NCR3O14931 201 aa9.03□□□□□ -0.96
TRIM3-212ENST00000533064 SERTAD4-AS1Q5TG53 156 aa9.03□□□□□ -0.96
TRIM3-212ENST00000533064 SMIM11BQ8TCY0 68 aa9.03□□□□□ -0.96
TRIM3-212ENST00000533064 ATXN8Q156A1 80 aa9.02□□□□□ -0.97
TRIM3-212ENST00000533064 F8W1H4 67 aa9.01□□□□□ -0.97
TRIM3-212ENST00000533064 IGLV5-37A0A075B6J1 123 aa9□□□□□ -0.97
TRIM3-212ENST00000533064 A0A087WYN8 130 aa9□□□□□ -0.97
TRIM3-212ENST00000533064 A0A1B0GV72 72 aa9□□□□□ -0.97
TRIM3-212ENST00000533064 A0A1W2PNN7 141 aa9□□□□□ -0.97
TRIM3-212ENST00000533064 M0QXV9 152 aa9□□□□□ -0.97
TRIM3-212ENST00000533064 M0R378 163 aa9□□□□□ -0.97
TRIM3-212ENST00000533064 S100A7L2Q5SY68 101 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms