RNA–Protein interactions for RNA: ENST00000531290.5

TRAPPC4-210, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,135 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-210ENST00000531290 PLNP26678 52 aa13.22□□□□□ -0.29
TRAPPC4-210ENST00000531290 MAP1LC3CQ9BXW4 147 aa13.22□□□□□ -0.29
TRAPPC4-210ENST00000531290 HIST1H2BKO60814 126 aa13.21□□□□□ -0.29
TRAPPC4-210ENST00000531290 HIST1H2BJP06899 126 aa13.21□□□□□ -0.29
TRAPPC4-210ENST00000531290 HIST1H2BOP23527 126 aa13.21□□□□□ -0.29
TRAPPC4-210ENST00000531290 HIST1H2BBP33778 126 aa13.21□□□□□ -0.29
TRAPPC4-210ENST00000531290 HIST1H2BDP58876 126 aa13.21□□□□□ -0.29
TRAPPC4-210ENST00000531290 HIST1H2BCP62807 126 aa13.21□□□□□ -0.29
TRAPPC4-210ENST00000531290 HIST2H2BEQ16778 126 aa13.21□□□□□ -0.29
TRAPPC4-210ENST00000531290 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.21□□□□□ -0.29
TRAPPC4-210ENST00000531290 HIST1H2BHQ93079 126 aa13.21□□□□□ -0.29
TRAPPC4-210ENST00000531290 HIST1H2BNQ99877 126 aa13.21□□□□□ -0.29
TRAPPC4-210ENST00000531290 HIST1H2BMQ99879 126 aa13.21□□□□□ -0.29
TRAPPC4-210ENST00000531290 CRYGAP11844 174 aa13.2□□□□□ -0.3
TRAPPC4-210ENST00000531290 ATP6V1G1O75348 118 aa13.19□□□□□ -0.3
TRAPPC4-210ENST00000531290 TSPAN13O95857 204 aa13.19□□□□□ -0.3
TRAPPC4-210ENST00000531290 UBE2AP49459 152 aa13.19□□□□□ -0.3
TRAPPC4-210ENST00000531290 LINC00158P58513 81 aa13.19□□□□□ -0.3
TRAPPC4-210ENST00000531290 DPM2O94777 84 aa13.18□□□□□ -0.3
TRAPPC4-210ENST00000531290 HERVK_113P61574 105 aa13.18□□□□□ -0.3
TRAPPC4-210ENST00000531290 TYMSOSQ8TAI1 123 aa13.18□□□□□ -0.3
TRAPPC4-210ENST00000531290 A0A087X002 238 aa13.17□□□□□ -0.3
TRAPPC4-210ENST00000531290 SND1-IT1Q9HBX3 110 aa13.17□□□□□ -0.3
TRAPPC4-210ENST00000531290 LINC00587B1AMM8 73 aa13.16□□□□□ -0.3
TRAPPC4-210ENST00000531290 HERV-K104P63124 156 aa13.16□□□□□ -0.3
TRAPPC4-210ENST00000531290 RPL24P83731 157 aaKnown RBP13.16□□□□□ -0.3
TRAPPC4-210ENST00000531290 IGKV2-28A0A075B6P5 120 aa13.15□□□□□ -0.3
TRAPPC4-210ENST00000531290 IGKV2D-28P01615 120 aa13.15□□□□□ -0.3
TRAPPC4-210ENST00000531290 MEIG1Q5JSS6 88 aa13.15□□□□□ -0.3
TRAPPC4-210ENST00000531290 MYMXA0A1B0GTQ4 84 aa13.14□□□□□ -0.31
TRAPPC4-210ENST00000531290 IGKCP01834 107 aa13.14□□□□□ -0.31
TRAPPC4-210ENST00000531290 KRTAP13-1Q8IUC0 172 aa13.13□□□□□ -0.31
TRAPPC4-210ENST00000531290 PLEKHB2Q96CS7 222 aa13.13□□□□□ -0.31
TRAPPC4-210ENST00000531290 PMCHL2Q9BQD1 86 aa13.13□□□□□ -0.31
TRAPPC4-210ENST00000531290 ANAPC11Q9NYG5 84 aa13.13□□□□□ -0.31
TRAPPC4-210ENST00000531290 NDUFA12Q9UI09 145 aa13.13□□□□□ -0.31
TRAPPC4-210ENST00000531290 A0A0U1RRA0 63 aa13.12□□□□□ -0.31
TRAPPC4-210ENST00000531290 LEPROTO15243 131 aa13.11□□□□□ -0.31
TRAPPC4-210ENST00000531290 S100A1P23297 94 aa13.11□□□□□ -0.31
TRAPPC4-210ENST00000531290 VPREB1P12018 145 aa13.1□□□□□ -0.31
TRAPPC4-210ENST00000531290 SYS1-DBNDD2H3BUS1 97 aa13.09□□□□□ -0.31
TRAPPC4-210ENST00000531290 SMIM13P0DJ93 91 aa13.09□□□□□ -0.31
TRAPPC4-210ENST00000531290 LGALS3P17931 250 aaKnown RBP13.08□□□□□ -0.32
TRAPPC4-210ENST00000531290 J3QQQ9 107 aa13.07□□□□□ -0.32
TRAPPC4-210ENST00000531290 FAM229BQ4G0N7 80 aa13.07□□□□□ -0.32
TRAPPC4-210ENST00000531290 FAM19A1Q7Z5A9 133 aa13.07□□□□□ -0.32
TRAPPC4-210ENST00000531290 TMEM126AQ9H061 195 aa13.07□□□□□ -0.32
TRAPPC4-210ENST00000531290 TMEM238C9JI98 176 aa13.06□□□□□ -0.32
TRAPPC4-210ENST00000531290 NMUP48645 174 aa13.06□□□□□ -0.32
TRAPPC4-210ENST00000531290 PRLHP81277 87 aa13.06□□□□□ -0.32
TRAPPC4-210ENST00000531290 KRTAP13-2Q52LG2 175 aa13.05□□□□□ -0.32
TRAPPC4-210ENST00000531290 PET117Q6UWS5 81 aa13.05□□□□□ -0.32
TRAPPC4-210ENST00000531290 MIR7-3HGQ8N6C7 128 aa13.05□□□□□ -0.32
TRAPPC4-210ENST00000531290 IGKV2D-26A0A0A0MRZ7 120 aa13.04□□□□□ -0.32
TRAPPC4-210ENST00000531290 COA6Q5JTJ3 125 aaKnown RBP13.04□□□□□ -0.32
TRAPPC4-210ENST00000531290 M0R378 163 aa13.02□□□□□ -0.33
TRAPPC4-210ENST00000531290 TSPEAR-AS2P59090 65 aa13.02□□□□□ -0.33
TRAPPC4-210ENST00000531290 BOD1L2Q8IYS8 172 aa13.02□□□□□ -0.33
TRAPPC4-210ENST00000531290 LINC00304Q8N9R0 145 aa13.01□□□□□ -0.33
TRAPPC4-210ENST00000531290 MUC2Q02817 5179 aa13.01□□□□□ -0.33
TRAPPC4-210ENST00000531290 KRTDAPP60985 99 aa13□□□□□ -0.33
TRAPPC4-210ENST00000531290 LINC01545Q5VT33 79 aa13□□□□□ -0.33
TRAPPC4-210ENST00000531290 Q8NDZ9 215 aa13□□□□□ -0.33
TRAPPC4-210ENST00000531290 E9PLD3 99 aa12.99□□□□□ -0.33
TRAPPC4-210ENST00000531290 C20orf202A1L168 122 aa12.98□□□□□ -0.33
TRAPPC4-210ENST00000531290 MIEN1Q9BRT3 115 aa12.98□□□□□ -0.33
TRAPPC4-210ENST00000531290 C3orf79P0CE67 100 aa12.97□□□□□ -0.33
TRAPPC4-210ENST00000531290 HIGD2AQ9BW72 106 aa12.96□□□□□ -0.33
TRAPPC4-210ENST00000531290 S100A12P80511 92 aa12.94□□□□□ -0.34
TRAPPC4-210ENST00000531290 RETNLBQ9BQ08 111 aa12.94□□□□□ -0.34
TRAPPC4-210ENST00000531290 DAND5Q8N907 189 aa12.93□□□□□ -0.34
TRAPPC4-210ENST00000531290 NCR3O14931 201 aa12.92□□□□□ -0.34
TRAPPC4-210ENST00000531290 AKR1D1P51857 326 aa12.92□□□□□ -0.34
TRAPPC4-210ENST00000531290 A0A0U1RQV1 116 aa12.91□□□□□ -0.34
TRAPPC4-210ENST00000531290 CTAG1AP78358 180 aa12.91□□□□□ -0.34
TRAPPC4-210ENST00000531290 A0A0J9YXY3 114 aa12.9□□□□□ -0.34
TRAPPC4-210ENST00000531290 S100A2P29034 98 aa12.9□□□□□ -0.34
TRAPPC4-210ENST00000531290 LOC107984156A0A0G2JMH3 177 aa12.89□□□□□ -0.35
TRAPPC4-210ENST00000531290 ARL17AQ8IVW1 177 aa12.89□□□□□ -0.35
TRAPPC4-210ENST00000531290 S100A6P06703 90 aa12.88□□□□□ -0.35
TRAPPC4-210ENST00000531290 C3orf22Q8N5N4 141 aa12.88□□□□□ -0.35
TRAPPC4-210ENST00000531290 PRYO14603 147 aa12.87□□□□□ -0.35
TRAPPC4-210ENST00000531290 ZNF706Q9Y5V0 76 aaPredicted RBP12.87□□□□□ -0.35
TRAPPC4-210ENST00000531290 IGLV7-46A0A075B6I9 117 aa12.86□□□□□ -0.35
TRAPPC4-210ENST00000531290 ZNF815PA8K554 130 aa12.86□□□□□ -0.35
TRAPPC4-210ENST00000531290 SPRR4Q96PI1 79 aa12.86□□□□□ -0.35
TRAPPC4-210ENST00000531290 TRBV10-2A0A0K0K1G8 114 aa12.85□□□□□ -0.35
TRAPPC4-210ENST00000531290 SPAG11AQ6PDA7 123 aa12.85□□□□□ -0.35
TRAPPC4-210ENST00000531290 CDIP1Q9H305 208 aa12.85□□□□□ -0.35
TRAPPC4-210ENST00000531290 SPANXB1Q9NS25 103 aaPredicted RBP12.85□□□□□ -0.35
TRAPPC4-210ENST00000531290 NDUFC2O95298 119 aa12.84□□□□□ -0.35
TRAPPC4-210ENST00000531290 S100A7L2Q5SY68 101 aa12.84□□□□□ -0.35
TRAPPC4-210ENST00000531290 TRBV10-3A0A0K0K1G6 114 aa12.83□□□□□ -0.36
TRAPPC4-210ENST00000531290 NPC2P61916 151 aa12.83□□□□□ -0.36
TRAPPC4-210ENST00000531290 ADAMTSL4-AS1Q5T5F5 129 aa12.83□□□□□ -0.36
TRAPPC4-210ENST00000531290 LINC00337Q8N6G1 96 aa12.83□□□□□ -0.36
TRAPPC4-210ENST00000531290 KCNQ1DNQ9H478 68 aa12.83□□□□□ -0.36
TRAPPC4-210ENST00000531290 ETDCA0A1B0GVM5 59 aa12.82□□□□□ -0.36
TRAPPC4-210ENST00000531290 TIMM17BO60830 172 aa12.82□□□□□ -0.36
TRAPPC4-210ENST00000531290 DDTP30046 118 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 166.4 ms