RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 LINC00575Q6W349 94 aa13.16□□□□□ -0.3
PCF11-203ENST00000530304 A0A0J9YWU9 116 aa13.16□□□□□ -0.3
PCF11-203ENST00000530304 IGHV4-30-4P0DP06 118 aa13.16□□□□□ -0.3
PCF11-203ENST00000530304 PRR34Q9NV39 138 aa13.16□□□□□ -0.3
PCF11-203ENST00000530304 INAFM1C9JVW0 142 aa13.15□□□□□ -0.3
PCF11-203ENST00000530304 TENM1Q9UKZ4 2725 aa13.15□□□□□ -0.3
PCF11-203ENST00000530304 MUC7Q8TAX7 377 aa13.14□□□□□ -0.31
PCF11-203ENST00000530304 ENHOQ6UWT2 76 aa13.14□□□□□ -0.31
PCF11-203ENST00000530304 hADV29S1A0JD25 119 aa13.12□□□□□ -0.31
PCF11-203ENST00000530304 TRRAPQ9Y4A5 3859 aa13.12□□□□□ -0.31
PCF11-203ENST00000530304 IGLV6-57P01721 117 aa13.11□□□□□ -0.31
PCF11-203ENST00000530304 CRYGAP11844 174 aa13.09□□□□□ -0.31
PCF11-203ENST00000530304 LYPD5Q6UWN5 251 aa13.09□□□□□ -0.31
PCF11-203ENST00000530304 OTOGQ6ZRI0 2925 aa13.08□□□□□ -0.32
PCF11-203ENST00000530304 NOTCH2Q04721 2471 aa13.08□□□□□ -0.32
PCF11-203ENST00000530304 GVQW2A0A096LPI5 108 aaPredicted RBP13.08□□□□□ -0.32
PCF11-203ENST00000530304 USP17L23D6RBM5 183 aa13.08□□□□□ -0.32
PCF11-203ENST00000530304 C6orf48Q9UBA6 75 aa13.08□□□□□ -0.32
PCF11-203ENST00000530304 RBM3P98179 157 aaKnown RBP13.07□□□□□ -0.32
PCF11-203ENST00000530304 ZNF561-AS1K7EIQ3 104 aa13.06□□□□□ -0.32
PCF11-203ENST00000530304 XAGE1AQ9HD64 81 aa13.06□□□□□ -0.32
PCF11-203ENST00000530304 SERP2Q8N6R1 65 aa13.05□□□□□ -0.32
PCF11-203ENST00000530304 WFDC9Q8NEX5 89 aa13.05□□□□□ -0.32
PCF11-203ENST00000530304 LAMTOR3Q9UHA4 124 aa13.05□□□□□ -0.32
PCF11-203ENST00000530304 ATP5EP2Q5VTU8 51 aa13.05□□□□□ -0.32
PCF11-203ENST00000530304 TRBV10-3A0A0K0K1G6 114 aa13.04□□□□□ -0.32
PCF11-203ENST00000530304 Q6ZQT0 140 aa13.04□□□□□ -0.32
PCF11-203ENST00000530304 UBL5Q9BZL1 73 aa13.04□□□□□ -0.32
PCF11-203ENST00000530304 NSD1Q96L73 2696 aaPredicted RBP13.03□□□□□ -0.32
PCF11-203ENST00000530304 Q6ZQY7 126 aa13.03□□□□□ -0.32
PCF11-203ENST00000530304 HIVEP1P15822 2718 aa13.02□□□□□ -0.32
PCF11-203ENST00000530304 TRAV23DV6A0A075B6W5 121 aa13.02□□□□□ -0.33
PCF11-203ENST00000530304 CYSTM1Q9H1C7 97 aa13.02□□□□□ -0.33
PCF11-203ENST00000530304 KMT2BQ9UMN6 2715 aaPredicted RBP13.02□□□□□ -0.33
PCF11-203ENST00000530304 LOC110117498A0A087WWA1 95 aa13.01□□□□□ -0.33
PCF11-203ENST00000530304 FAM19A1Q7Z5A9 133 aa13.01□□□□□ -0.33
PCF11-203ENST00000530304 ATRQ13535 2644 aa13.01□□□□□ -0.33
PCF11-203ENST00000530304 HECTD1Q9ULT8 2610 aa13.01□□□□□ -0.33
PCF11-203ENST00000530304 WFDC10BQ8IUB3 73 aa13□□□□□ -0.33
PCF11-203ENST00000530304 HIGD2BQ4VC39 106 aa12.99□□□□□ -0.33
PCF11-203ENST00000530304 DIRC1Q969H9 104 aa12.99□□□□□ -0.33
PCF11-203ENST00000530304 M0R2N4 97 aa12.99□□□□□ -0.33
PCF11-203ENST00000530304 WIPF1O43516 503 aa12.99□□□□□ -0.33
PCF11-203ENST00000530304 TEP1Q99973 2627 aaKnown RBP12.98□□□□□ -0.33
PCF11-203ENST00000530304 UPK3BQ9BT76 320 aa12.98□□□□□ -0.33
PCF11-203ENST00000530304 LOC107984640A0A0U1RRK4 108 aa12.98□□□□□ -0.33
PCF11-203ENST00000530304 CAMK2N2Q96S95 79 aa12.97□□□□□ -0.33
PCF11-203ENST00000530304 DSCR8Q96T75 97 aa12.97□□□□□ -0.33
PCF11-203ENST00000530304 ZNF73O43830 326 aaPredicted RBP12.97□□□□□ -0.33
PCF11-203ENST00000530304 KPRPQ5T749 579 aaPredicted RBP12.97□□□□□ -0.33
PCF11-203ENST00000530304 H3BQ85 93 aa12.95□□□□□ -0.34
PCF11-203ENST00000530304 KRTAP26-1Q6PEX3 210 aa12.95□□□□□ -0.34
PCF11-203ENST00000530304 RETNQ9HD89 108 aa12.95□□□□□ -0.34
PCF11-203ENST00000530304 COX7BP24311 80 aa12.94□□□□□ -0.34
PCF11-203ENST00000530304 GHRHP01286 108 aa12.93□□□□□ -0.34
PCF11-203ENST00000530304 VPREB1P12018 145 aa12.93□□□□□ -0.34
PCF11-203ENST00000530304 H3BNG1 76 aa12.93□□□□□ -0.34
PCF11-203ENST00000530304 ELOF1P60002 83 aaKnown RBP12.92□□□□□ -0.34
PCF11-203ENST00000530304 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.92□□□□□ -0.34
PCF11-203ENST00000530304 Q6ZRU5 148 aa12.92□□□□□ -0.34
PCF11-203ENST00000530304 EGFEM1PQ0D2K5 195 aa12.92□□□□□ -0.34
PCF11-203ENST00000530304 Q6ZTC4 211 aa12.92□□□□□ -0.34
PCF11-203ENST00000530304 PDE6GP18545 87 aa12.91□□□□□ -0.34
PCF11-203ENST00000530304 Q6ZVQ6 151 aa12.91□□□□□ -0.34
PCF11-203ENST00000530304 C15orf56Q8N910 161 aa12.91□□□□□ -0.34
PCF11-203ENST00000530304 LINC01547P58512 204 aaPredicted RBP12.9□□□□□ -0.34
PCF11-203ENST00000530304 OXLD1Q5BKU9 147 aa12.9□□□□□ -0.35
PCF11-203ENST00000530304 TRBV7-6A0A0J9YX20 115 aa12.89□□□□□ -0.35
PCF11-203ENST00000530304 J3KT08 172 aa12.89□□□□□ -0.35
PCF11-203ENST00000530304 M0R378 163 aa12.89□□□□□ -0.35
PCF11-203ENST00000530304 HAMPP81172 84 aa12.89□□□□□ -0.35
PCF11-203ENST00000530304 ESRGQ1W209 222 aa12.88□□□□□ -0.35
PCF11-203ENST00000530304 NDUFC2-KCTD14E9PQ53 114 aa12.88□□□□□ -0.35
PCF11-203ENST00000530304 TMEM258P61165 79 aa12.87□□□□□ -0.35
PCF11-203ENST00000530304 TRBV7-4A0A0J9YYF1 115 aa12.86□□□□□ -0.35
PCF11-203ENST00000530304 KRTAP10-11P60412 298 aa12.86□□□□□ -0.35
PCF11-203ENST00000530304 ANK2Q01484 3957 aa12.85□□□□□ -0.35
PCF11-203ENST00000530304 PKD1L1Q8TDX9 2849 aa12.85□□□□□ -0.35
PCF11-203ENST00000530304 FAM19A5Q7Z5A7 132 aaPredicted RBP12.84□□□□□ -0.35
PCF11-203ENST00000530304 Q6ZRP5 223 aa12.84□□□□□ -0.35
PCF11-203ENST00000530304 C1orf43Q9BWL3 253 aa12.84□□□□□ -0.35
PCF11-203ENST00000530304 LINC00528Q8N1L1 170 aa12.83□□□□□ -0.36
PCF11-203ENST00000530304 RPS28P62857 69 aaKnown RBP12.82□□□□□ -0.36
PCF11-203ENST00000530304 CXCL6P80162 114 aa12.82□□□□□ -0.36
PCF11-203ENST00000530304 IGKV2D-24A0A075B6R9 120 aa12.81□□□□□ -0.36
PCF11-203ENST00000530304 DPH3Q96FX2 82 aa12.8□□□□□ -0.36
PCF11-203ENST00000530304 LINC01556Q5JQF7 62 aa12.79□□□□□ -0.36
PCF11-203ENST00000530304 C20orf197Q8N268 126 aa12.77□□□□□ -0.36
PCF11-203ENST00000530304 TRAV10A0A0B4J240 114 aa12.77□□□□□ -0.37
PCF11-203ENST00000530304 BCE1O60756 84 aa12.77□□□□□ -0.37
PCF11-203ENST00000530304 DEFB131BA0A096LNP1 70 aa12.76□□□□□ -0.37
PCF11-203ENST00000530304 SYCNQ0VAF6 134 aa12.76□□□□□ -0.37
PCF11-203ENST00000530304 TRAV7A0A075B6U4 112 aa12.75□□□□□ -0.37
PCF11-203ENST00000530304 SCXQ7RTU7 201 aa12.75□□□□□ -0.37
PCF11-203ENST00000530304 F8WDY8 70 aa12.75□□□□□ -0.37
PCF11-203ENST00000530304 C11orf45Q8TAV5 145 aa12.73□□□□□ -0.37
PCF11-203ENST00000530304 TENM3Q9P273 2699 aa12.72□□□□□ -0.37
PCF11-203ENST00000530304 SERTAD4-AS1Q5TG53 156 aa12.72□□□□□ -0.37
PCF11-203ENST00000530304 NKAPP1Q8N9T2 125 aa12.71□□□□□ -0.37
PCF11-203ENST00000530304 KCNQ1DNQ9H478 68 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms