RNA–Protein interactions for RNA: ENST00000529661.1

C11orf88-204, Transcript of chromosome 11 open reading frame 88, humanhuman

TSL 3

Gene C11orf88, Length 624 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88-204ENST00000529661 CACNA1HO95180 2353 aa1.07□□□□□ -2.24
C11orf88-204ENST00000529661 PLCH1Q4KWH8 1693 aa1.07□□□□□ -2.24
C11orf88-204ENST00000529661 I3L2K1 104 aa1.06□□□□□ -2.24
C11orf88-204ENST00000529661 SMIM13P0DJ93 91 aa1.06□□□□□ -2.24
C11orf88-204ENST00000529661 PARP4Q9UKK3 1724 aaKnown RBP1.06□□□□□ -2.24
C11orf88-204ENST00000529661 CLIP1P30622 1438 aa1.06□□□□□ -2.24
C11orf88-204ENST00000529661 LRRC7Q96NW7 1537 aa1.05□□□□□ -2.24
C11orf88-204ENST00000529661 DEFA5Q01523 94 aa1.05□□□□□ -2.24
C11orf88-204ENST00000529661 COX6A2Q02221 97 aa1.05□□□□□ -2.24
C11orf88-204ENST00000529661 TP53AIP1Q9HCN2 124 aa1.05□□□□□ -2.24
C11orf88-204ENST00000529661 MROH1Q8NDA8 1641 aa1.04□□□□□ -2.24
C11orf88-204ENST00000529661 TSC2P49815 1807 aa1.04□□□□□ -2.24
C11orf88-204ENST00000529661 DEFB123Q8N688 67 aa1.04□□□□□ -2.24
C11orf88-204ENST00000529661 DUOX2Q9NRD8 1548 aa1.04□□□□□ -2.24
C11orf88-204ENST00000529661 USP32Q8NFA0 1604 aa1.04□□□□□ -2.24
C11orf88-204ENST00000529661 CICQ96RK0 1608 aaPredicted RBP1.04□□□□□ -2.24
C11orf88-204ENST00000529661 DOT1LQ8TEK3 1739 aa1.03□□□□□ -2.24
C11orf88-204ENST00000529661 UMAD1C9J7I0 102 aa1.03□□□□□ -2.24
C11orf88-204ENST00000529661 NDUFB1O75438 58 aa1.03□□□□□ -2.24
C11orf88-204ENST00000529661 DEFB112Q30KQ8 113 aa1.03□□□□□ -2.24
C11orf88-204ENST00000529661 PIGYQ3MUY2 71 aa1.03□□□□□ -2.24
C11orf88-204ENST00000529661 USP24Q9UPU5 2620 aa1.03□□□□□ -2.24
C11orf88-204ENST00000529661 TRANK1O15050 2925 aa1.03□□□□□ -2.24
C11orf88-204ENST00000529661 CD163L1Q9NR16 1453 aa1.03□□□□□ -2.24
C11orf88-204ENST00000529661 BIVM-ERCC5R4GMW8 1640 aa1.03□□□□□ -2.24
C11orf88-204ENST00000529661 SMIM31A0A1B0GVY4 71 aa1.02□□□□□ -2.25
C11orf88-204ENST00000529661 WIZO95785 1651 aa1.02□□□□□ -2.25
C11orf88-204ENST00000529661 C2CD3Q4AC94 2353 aa1.02□□□□□ -2.25
C11orf88-204ENST00000529661 SRCAPQ6ZRS2 3230 aa1.02□□□□□ -2.25
C11orf88-204ENST00000529661 TRAV21A0A0B4J279 112 aa1.01□□□□□ -2.25
C11orf88-204ENST00000529661 IFI27P40305 119 aaPredicted RBP1.01□□□□□ -2.25
C11orf88-204ENST00000529661 Q5BKY6 102 aa1.01□□□□□ -2.25
C11orf88-204ENST00000529661 KRTAP5-10Q6L8G5 202 aa1.01□□□□□ -2.25
C11orf88-204ENST00000529661 HEPN1Q6WQI6 88 aa1.01□□□□□ -2.25
C11orf88-204ENST00000529661 FMN2Q9NZ56 1722 aa1.01□□□□□ -2.25
C11orf88-204ENST00000529661 EIF2AK4Q9P2K8 1649 aaKnown RBP1□□□□□ -2.25
C11orf88-204ENST00000529661 INO80Q9ULG1 1556 aaPredicted RBP1□□□□□ -2.25
C11orf88-204ENST00000529661 USF3Q68DE3 2245 aa1□□□□□ -2.25
C11orf88-204ENST00000529661 PRO0255Q9UI72 69 aa1□□□□□ -2.25
C11orf88-204ENST00000529661 PTPRZ1P23471 2315 aaPredicted RBP0.99□□□□□ -2.25
C11orf88-204ENST00000529661 A0A087WXM4 84 aa0.99□□□□□ -2.25
C11orf88-204ENST00000529661 GAFA1Q96PS6 74 aa0.99□□□□□ -2.25
C11orf88-204ENST00000529661 ABCA9Q8IUA7 1624 aa0.98□□□□□ -2.25
C11orf88-204ENST00000529661 COX7BP24311 80 aa0.98□□□□□ -2.25
C11orf88-204ENST00000529661 Q8IZM0 81 aa0.98□□□□□ -2.25
C11orf88-204ENST00000529661 USMG5Q96IX5 58 aa0.98□□□□□ -2.25
C11orf88-204ENST00000529661 COL6A3P12111 3177 aa0.98□□□□□ -2.25
C11orf88-204ENST00000529661 MEGF8Q7Z7M0 2845 aa0.98□□□□□ -2.25
C11orf88-204ENST00000529661 EFCAB5A4FU69 1503 aa0.98□□□□□ -2.25
C11orf88-204ENST00000529661 ANKRD50Q9ULJ7 1429 aa0.98□□□□□ -2.25
C11orf88-204ENST00000529661 NHSQ6T4R5 1651 aa0.97□□□□□ -2.25
C11orf88-204ENST00000529661 TTC28Q96AY4 2481 aa0.97□□□□□ -2.25
C11orf88-204ENST00000529661 MADDQ8WXG6 1647 aa0.97□□□□□ -2.25
C11orf88-204ENST00000529661 SPTBN2O15020 2390 aa0.97□□□□□ -2.25
C11orf88-204ENST00000529661 CACNA1EQ15878 2313 aa0.97□□□□□ -2.25
C11orf88-204ENST00000529661 CHD8Q9HCK8 2581 aa0.97□□□□□ -2.25
C11orf88-204ENST00000529661 K7EQZ3 153 aa0.97□□□□□ -2.25
C11orf88-204ENST00000529661 WFDC9Q8NEX5 89 aa0.97□□□□□ -2.25
C11orf88-204ENST00000529661 PIEZO2Q9H5I5 2752 aa0.97□□□□□ -2.25
C11orf88-204ENST00000529661 PREX1Q8TCU6 1659 aa0.97□□□□□ -2.25
C11orf88-204ENST00000529661 CDC42BPGQ6DT37 1551 aa0.96□□□□□ -2.26
C11orf88-204ENST00000529661 ASXL1Q8IXJ9 1541 aa0.96□□□□□ -2.26
C11orf88-204ENST00000529661 RICTORQ6R327 1708 aa0.96□□□□□ -2.26
C11orf88-204ENST00000529661 POLQO75417 2590 aa0.96□□□□□ -2.26
C11orf88-204ENST00000529661 LCE6AA0A183 80 aa0.96□□□□□ -2.26
C11orf88-204ENST00000529661 IFI6P09912 130 aa0.96□□□□□ -2.26
C11orf88-204ENST00000529661 PTPRQQ9UMZ3 2332 aa0.96□□□□□ -2.26
C11orf88-204ENST00000529661 FBN2P35556 2912 aa0.96□□□□□ -2.26
C11orf88-204ENST00000529661 CCDC180Q9P1Z9 1646 aa0.96□□□□□ -2.26
C11orf88-204ENST00000529661 F8P00451 2351 aa0.96□□□□□ -2.26
C11orf88-204ENST00000529661 HMGA1P17096 107 aaKnown RBP0.95□□□□□ -2.26
C11orf88-204ENST00000529661 NWD1Q149M9 1564 aa0.95□□□□□ -2.26
C11orf88-204ENST00000529661 CNOT1A5YKK6 2376 aaKnown RBP0.94□□□□□ -2.26
C11orf88-204ENST00000529661 NESP48681 1621 aa0.94□□□□□ -2.26
C11orf88-204ENST00000529661 SPTY2D1-AS1A0A0U1RR47 76 aa0.94□□□□□ -2.26
C11orf88-204ENST00000529661 CRIPTQ9P021 101 aa0.94□□□□□ -2.26
C11orf88-204ENST00000529661 NRAPQ86VF7 1730 aa0.94□□□□□ -2.26
C11orf88-204ENST00000529661 DDX60LQ5H9U9 1706 aaKnown RBP0.93□□□□□ -2.26
C11orf88-204ENST00000529661 CPSF4LA6NMK7 179 aaKnown RBP0.93□□□□□ -2.26
C11orf88-204ENST00000529661 COX6B1P14854 86 aa0.93□□□□□ -2.26
C11orf88-204ENST00000529661 RPL38P63173 70 aaKnown RBP0.93□□□□□ -2.26
C11orf88-204ENST00000529661 NREPQ16612 68 aa0.93□□□□□ -2.26
C11orf88-204ENST00000529661 Q5VSD8 79 aa0.93□□□□□ -2.26
C11orf88-204ENST00000529661 SETXQ7Z333 2677 aaKnown RBP0.93□□□□□ -2.26
C11orf88-204ENST00000529661 LMTK2Q8IWU2 1503 aa0.93□□□□□ -2.26
C11orf88-204ENST00000529661 NOTCH1P46531 2555 aa0.93□□□□□ -2.26
C11orf88-204ENST00000529661 USP9XQ93008 2570 aaPredicted RBP0.92□□□□□ -2.26
C11orf88-204ENST00000529661 COX8AP10176 69 aa0.92□□□□□ -2.26
C11orf88-204ENST00000529661 ZNF292O60281 2723 aa0.92□□□□□ -2.26
C11orf88-204ENST00000529661 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.92□□□□□ -2.26
C11orf88-204ENST00000529661 FXYD6-FXYD2A0A087WZ82 144 aa0.91□□□□□ -2.26
C11orf88-204ENST00000529661 I3L3M4 83 aa0.91□□□□□ -2.26
C11orf88-204ENST00000529661 CELSR2Q9HCU4 2923 aa0.91□□□□□ -2.26
C11orf88-204ENST00000529661 ABCA12Q86UK0 2595 aa0.91□□□□□ -2.26
C11orf88-204ENST00000529661 TNRC6CQ9HCJ0 1690 aaKnown RBP0.91□□□□□ -2.26
C11orf88-204ENST00000529661 TNCP24821 2201 aa0.91□□□□□ -2.26
C11orf88-204ENST00000529661 HFM1A2PYH4 1435 aa0.9□□□□□ -2.26
C11orf88-204ENST00000529661 TEP1Q99973 2627 aaKnown RBP0.9□□□□□ -2.26
C11orf88-204ENST00000529661 TJP1Q07157 1748 aa0.9□□□□□ -2.27
C11orf88-204ENST00000529661 MAST4O15021 2626 aa0.9□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms