RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 IGLV5-39A0A0G2JS06 123 aa8.47□□□□□ -1.05
CPSF1-201ENST00000526271 SPINK8P0C7L1 97 aa8.47□□□□□ -1.05
CPSF1-201ENST00000526271 PRR4Q16378 134 aa8.46□□□□□ -1.06
CPSF1-201ENST00000526271 GAGE2EQ4V326 116 aa8.46□□□□□ -1.06
CPSF1-201ENST00000526271 Q8IZM0 81 aa8.46□□□□□ -1.06
CPSF1-201ENST00000526271 GAGE2DQ9UEU5 116 aa8.46□□□□□ -1.06
CPSF1-201ENST00000526271 C2orf82Q6UX34 121 aa8.45□□□□□ -1.06
CPSF1-201ENST00000526271 C20orf202A1L168 122 aa8.44□□□□□ -1.06
CPSF1-201ENST00000526271 M0QXV9 152 aa8.44□□□□□ -1.06
CPSF1-201ENST00000526271 AKR1D1P51857 326 aa8.44□□□□□ -1.06
CPSF1-201ENST00000526271 COX7B2Q8TF08 81 aa8.44□□□□□ -1.06
CPSF1-201ENST00000526271 C6orf226Q5I0X4 101 aa8.43□□□□□ -1.06
CPSF1-201ENST00000526271 A0A087X002 238 aa8.42□□□□□ -1.06
CPSF1-201ENST00000526271 PRSS2P07478 247 aa8.42□□□□□ -1.06
CPSF1-201ENST00000526271 TOMM7Q9P0U1 55 aa8.42□□□□□ -1.06
CPSF1-201ENST00000526271 TRBV30A0A0K0K1B3 111 aa8.41□□□□□ -1.06
CPSF1-201ENST00000526271 E9PLD3 99 aa8.4□□□□□ -1.06
CPSF1-201ENST00000526271 LEPROTO15243 131 aa8.4□□□□□ -1.06
CPSF1-201ENST00000526271 CXCL5P42830 114 aa8.4□□□□□ -1.06
CPSF1-201ENST00000526271 CKS1BP61024 79 aa8.4□□□□□ -1.06
CPSF1-201ENST00000526271 HERVK_113P61574 105 aa8.4□□□□□ -1.06
CPSF1-201ENST00000526271 SCGB1D1O95968 90 aa8.39□□□□□ -1.07
CPSF1-201ENST00000526271 JOSD1Q15040 202 aaPredicted RBP8.39□□□□□ -1.07
CPSF1-201ENST00000526271 NDUFC2-KCTD14E9PQ53 114 aa8.38□□□□□ -1.07
CPSF1-201ENST00000526271 ZNF861PO60384 105 aa8.38□□□□□ -1.07
CPSF1-201ENST00000526271 TSPAN13O95857 204 aa8.38□□□□□ -1.07
CPSF1-201ENST00000526271 ATOH7Q8N100 152 aa8.38□□□□□ -1.07
CPSF1-201ENST00000526271 PLEKHB2Q96CS7 222 aa8.38□□□□□ -1.07
CPSF1-201ENST00000526271 ZNF625Q96I27 306 aaPredicted RBP8.38□□□□□ -1.07
CPSF1-201ENST00000526271 J3QQQ9 107 aa8.37□□□□□ -1.07
CPSF1-201ENST00000526271 TSPEAR-AS2P59090 65 aa8.37□□□□□ -1.07
CPSF1-201ENST00000526271 UBE2BP63146 152 aa8.37□□□□□ -1.07
CPSF1-201ENST00000526271 KRTAP9-6A0A140TA67 174 aa8.36□□□□□ -1.07
CPSF1-201ENST00000526271 RPL13AP40429 203 aaKnown RBP8.36□□□□□ -1.07
CPSF1-201ENST00000526271 SFTA2Q6UW10 78 aa8.36□□□□□ -1.07
CPSF1-201ENST00000526271 IGKV2D-26A0A0A0MRZ7 120 aa8.35□□□□□ -1.07
CPSF1-201ENST00000526271 ANKRD39Q53RE8 183 aa8.35□□□□□ -1.07
CPSF1-201ENST00000526271 ANAPC11Q9NYG5 84 aa8.35□□□□□ -1.07
CPSF1-201ENST00000526271 C22orf24Q9Y442 160 aa8.35□□□□□ -1.07
CPSF1-201ENST00000526271 NMUP48645 174 aa8.34□□□□□ -1.07
CPSF1-201ENST00000526271 KRTAP13-2Q52LG2 175 aa8.34□□□□□ -1.07
CPSF1-201ENST00000526271 PYY3Q5JQD4 70 aa8.34□□□□□ -1.07
CPSF1-201ENST00000526271 NDUFA12Q9UI09 145 aa8.34□□□□□ -1.07
CPSF1-201ENST00000526271 MYMXA0A1B0GTQ4 84 aa8.33□□□□□ -1.08
CPSF1-201ENST00000526271 LGALS3P17931 250 aaKnown RBP8.33□□□□□ -1.08
CPSF1-201ENST00000526271 XAGE1AQ9HD64 81 aa8.33□□□□□ -1.08
CPSF1-201ENST00000526271 HERV-K104P63124 156 aa8.32□□□□□ -1.08
CPSF1-201ENST00000526271 LOC105371267A0A1B0GV96 52 aa8.31□□□□□ -1.08
CPSF1-201ENST00000526271 HSBP1L1C9JCN9 74 aa8.31□□□□□ -1.08
CPSF1-201ENST00000526271 COX17Q14061 63 aa8.31□□□□□ -1.08
CPSF1-201ENST00000526271 RETNLBQ9BQ08 111 aa8.31□□□□□ -1.08
CPSF1-201ENST00000526271 LBHQ53QV2 105 aaPredicted RBP8.3□□□□□ -1.08
CPSF1-201ENST00000526271 KRTAP13-1Q8IUC0 172 aa8.3□□□□□ -1.08
CPSF1-201ENST00000526271 ERG28Q9UKR5 140 aa8.3□□□□□ -1.08
CPSF1-201ENST00000526271 LINC00587B1AMM8 73 aa8.29□□□□□ -1.08
CPSF1-201ENST00000526271 TTTY13Q9BZ97 58 aa8.29□□□□□ -1.08
CPSF1-201ENST00000526271 A0A0J9YXY3 114 aa8.28□□□□□ -1.08
CPSF1-201ENST00000526271 PCP2Q8IVA1 136 aa8.28□□□□□ -1.08
CPSF1-201ENST00000526271 A0A0U1RQV1 116 aa8.27□□□□□ -1.09
CPSF1-201ENST00000526271 ZNF815PA8K554 130 aa8.27□□□□□ -1.09
CPSF1-201ENST00000526271 BCE1O60756 84 aa8.27□□□□□ -1.09
CPSF1-201ENST00000526271 SMIM13P0DJ93 91 aa8.27□□□□□ -1.09
CPSF1-201ENST00000526271 PFN2P35080 140 aa8.27□□□□□ -1.09
CPSF1-201ENST00000526271 LINC00158P58513 81 aa8.26□□□□□ -1.09
CPSF1-201ENST00000526271 MRPL55Q7Z7F7 128 aaKnown RBP8.26□□□□□ -1.09
CPSF1-201ENST00000526271 LINC00167Q96N53 147 aa8.26□□□□□ -1.09
CPSF1-201ENST00000526271 VAMP8Q9BV40 100 aa8.26□□□□□ -1.09
CPSF1-201ENST00000526271 SPATA45Q537H7 98 aa8.25□□□□□ -1.09
CPSF1-201ENST00000526271 MEIG1Q5JSS6 88 aa8.25□□□□□ -1.09
CPSF1-201ENST00000526271 TYMSOSQ8TAI1 123 aa8.25□□□□□ -1.09
CPSF1-201ENST00000526271 TP73-AS1Q9UF72 201 aa8.25□□□□□ -1.09
CPSF1-201ENST00000526271 PAM16Q9Y3D7 125 aa8.25□□□□□ -1.09
CPSF1-201ENST00000526271 RPL37AP8A6NKH3 93 aa8.24□□□□□ -1.09
CPSF1-201ENST00000526271 TIMM17BO60830 172 aa8.24□□□□□ -1.09
CPSF1-201ENST00000526271 COX8AP10176 69 aa8.24□□□□□ -1.09
CPSF1-201ENST00000526271 CRYGAP11844 174 aa8.24□□□□□ -1.09
CPSF1-201ENST00000526271 BOD1L2Q8IYS8 172 aa8.24□□□□□ -1.09
CPSF1-201ENST00000526271 A0A0U1RRA0 63 aa8.23□□□□□ -1.09
CPSF1-201ENST00000526271 DLEU1O43261 78 aa8.23□□□□□ -1.09
CPSF1-201ENST00000526271 ADAMTSL4-AS1Q5T5F5 129 aa8.23□□□□□ -1.09
CPSF1-201ENST00000526271 LITAFQ99732 161 aa8.23□□□□□ -1.09
CPSF1-201ENST00000526271 SND1-IT1Q9HBX3 110 aa8.23□□□□□ -1.09
CPSF1-201ENST00000526271 LOC107984156A0A0G2JMH3 177 aa8.22□□□□□ -1.09
CPSF1-201ENST00000526271 RPL28P46779 137 aaKnown RBP8.22□□□□□ -1.09
CPSF1-201ENST00000526271 ARL17AQ8IVW1 177 aa8.22□□□□□ -1.09
CPSF1-201ENST00000526271 MIR7-3HGQ8N6C7 128 aa8.22□□□□□ -1.09
CPSF1-201ENST00000526271 GAGE10A6NGK3 116 aa8.21□□□□□ -1.1
CPSF1-201ENST00000526271 TPRXLQ17RH7 258 aa8.21□□□□□ -1.1
CPSF1-201ENST00000526271 C14orf144Q96I85 54 aa8.21□□□□□ -1.1
CPSF1-201ENST00000526271 SMIM6P0DI80 62 aa8.2□□□□□ -1.1
CPSF1-201ENST00000526271 SCGB1D4Q6XE38 83 aa8.2□□□□□ -1.1
CPSF1-201ENST00000526271 KRTAP4-1Q9BYQ7 146 aa8.2□□□□□ -1.1
CPSF1-201ENST00000526271 IGLV5-37A0A075B6J1 123 aa8.19□□□□□ -1.1
CPSF1-201ENST00000526271 S100A12P80511 92 aa8.19□□□□□ -1.1
CPSF1-201ENST00000526271 DAND5Q8N907 189 aa8.19□□□□□ -1.1
CPSF1-201ENST00000526271 NKAPP1Q8N9T2 125 aa8.19□□□□□ -1.1
CPSF1-201ENST00000526271 LINC00304Q8N9R0 145 aa8.18□□□□□ -1.1
CPSF1-201ENST00000526271 Q8NDZ9 215 aa8.18□□□□□ -1.1
CPSF1-201ENST00000526271 SPANXDQ9BXN6 97 aa8.18□□□□□ -1.1
CPSF1-201ENST00000526271 SPANXCQ9NY87 97 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms