RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 TRBV6-1A0A0K0K1D8 114 aa1.29□□□□□ -2.2
CD44-216ENST00000525293 IGLV3-1P01715 115 aa1.29□□□□□ -2.2
CD44-216ENST00000525293 IAPPP10997 89 aa1.29□□□□□ -2.2
CD44-216ENST00000525293 TFF3Q07654 80 aa1.29□□□□□ -2.2
CD44-216ENST00000525293 KRTAP5-7Q6L8G8 165 aa1.29□□□□□ -2.2
CD44-216ENST00000525293 SPATA8Q6RVD6 105 aa1.29□□□□□ -2.2
CD44-216ENST00000525293 SPINT4Q6UDR6 99 aa1.29□□□□□ -2.2
CD44-216ENST00000525293 ZNF625Q96I27 306 aaPredicted RBP1.29□□□□□ -2.2
CD44-216ENST00000525293 SPRR4Q96PI1 79 aa1.29□□□□□ -2.2
CD44-216ENST00000525293 WFDC10AQ9H1F0 79 aa1.29□□□□□ -2.2
CD44-216ENST00000525293 HEATR1Q9H583 2144 aaKnown RBP1.29□□□□□ -2.2
CD44-216ENST00000525293 RYR1P21817 5038 aa1.29□□□□□ -2.2
CD44-216ENST00000525293 HEATR5BQ9P2D3 2071 aa1.28□□□□□ -2.2
CD44-216ENST00000525293 PI4KAP42356 2102 aa1.28□□□□□ -2.2
CD44-216ENST00000525293 MALRD1Q5VYJ5 2156 aa1.28□□□□□ -2.2
CD44-216ENST00000525293 MAP1BP46821 2468 aaKnown RBP1.28□□□□□ -2.2
CD44-216ENST00000525293 MACF1Q9UPN3 7388 aaKnown RBP1.28□□□□□ -2.2
CD44-216ENST00000525293 CPSF4LA6NMK7 179 aaKnown RBP1.28□□□□□ -2.2
CD44-216ENST00000525293 H0Y9P7 68 aa1.28□□□□□ -2.2
CD44-216ENST00000525293 NCR3O14931 201 aa1.28□□□□□ -2.2
CD44-216ENST00000525293 RPL38P63173 70 aaKnown RBP1.28□□□□□ -2.2
CD44-216ENST00000525293 DEFB112Q30KQ8 113 aa1.28□□□□□ -2.2
CD44-216ENST00000525293 Q86TA4 180 aa1.28□□□□□ -2.2
CD44-216ENST00000525293 ST20-AS1Q8NBB2 130 aa1.28□□□□□ -2.2
CD44-216ENST00000525293 GAFA1Q96PS6 74 aa1.28□□□□□ -2.2
CD44-216ENST00000525293 LINC00472Q9H8W2 130 aa1.28□□□□□ -2.2
CD44-216ENST00000525293 R4GMQ9 66 aa1.28□□□□□ -2.2
CD44-216ENST00000525293 LRRC37A3O60309 1634 aa1.28□□□□□ -2.2
CD44-216ENST00000525293 NRAPQ86VF7 1730 aa1.28□□□□□ -2.2
CD44-216ENST00000525293 DDX60Q8IY21 1712 aaKnown RBP1.28□□□□□ -2.2
CD44-216ENST00000525293 MPDZO75970 2070 aa1.28□□□□□ -2.2
CD44-216ENST00000525293 DIDO1Q9BTC0 2240 aaKnown RBP1.28□□□□□ -2.2
CD44-216ENST00000525293 HMCN1Q96RW7 5635 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 RANBP2P49792 3224 aaKnown RBP1.27□□□□□ -2.21
CD44-216ENST00000525293 IGSF10Q6WRI0 2623 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 HIVEP2P31629 2446 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 OTOGLQ3ZCN5 2332 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 BAZ2BQ9UIF8 2168 aaKnown RBP1.27□□□□□ -2.21
CD44-216ENST00000525293 TET1Q8NFU7 2136 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 NCOA6Q14686 2063 aaPredicted RBP1.27□□□□□ -2.21
CD44-216ENST00000525293 TNRC6BQ9UPQ9 1833 aaKnown RBP1.27□□□□□ -2.21
CD44-216ENST00000525293 TOGARAM1Q9Y4F4 1720 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 TRGV4A0A0C4DH28 118 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 NBDYA0A0U1RRE5 68 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 NDUFA4O00483 81 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 HAMPP81172 84 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 PDE6HQ13956 83 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 COA5Q86WW8 74 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 LINC00304Q8N9R0 145 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 TENM4Q6N022 2769 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 TTC28Q96AY4 2481 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 ZGRF1Q86YA3 2104 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 RYR3Q15413 4870 aa1.27□□□□□ -2.21
CD44-216ENST00000525293 DNAH12Q6ZR08 3092 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 C4AP0C0L4 1744 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 C4BP0C0L5 1744 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 SDK2Q58EX2 2172 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 H3BSH0 61 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 UQCR11O14957 56 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 SPTBP11277 2137 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 PDE6GP18545 87 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 ESPL1Q14674 2120 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 MYO7BQ6PIF6 2116 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 Q6ZTI0 123 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 PATE1Q8WXA2 126 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 TMEM167BQ9NRX6 74 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 PRO2289Q9P1D8 64 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 CRCT1Q9UGL9 99 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 R4GN34 69 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 ARHGAP32A7KAX9 2087 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 SHROOM3Q8TF72 1996 aa1.26□□□□□ -2.21
CD44-216ENST00000525293 SYNE2Q8WXH0 6885 aaKnown RBP1.26□□□□□ -2.21
CD44-216ENST00000525293 FREM3P0C091 2139 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 DNHD1Q96M86 4753 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.25□□□□□ -2.21
CD44-216ENST00000525293 TRGV1A0A0A0MS02 117 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 A0A0G2JQZ4 141 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 JMJD7-PLA2G4BH0Y9G9 81 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 NDUFB1O75438 58 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 IGKV4-1P06312 121 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 MGPP08493 103 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 FXYD4P59646 89 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 LY6EQ16553 131 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 TPRXLQ17RH7 258 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 SPACA4Q8TDM5 124 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 Q96NJ1 140 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 BCORQ6W2J9 1755 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 NRXN2Q9P2S2 1712 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 REV3LO60673 3130 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 CR1P17927 2039 aa1.25□□□□□ -2.21
CD44-216ENST00000525293 EPPK1P58107 5090 aaKnown RBP1.25□□□□□ -2.21
CD44-216ENST00000525293 FN1P02751 2386 aaKnown RBP1.25□□□□□ -2.21
CD44-216ENST00000525293 INTS1Q8N201 2190 aaKnown RBP1.24□□□□□ -2.21
CD44-216ENST00000525293 EP400Q96L91 3159 aa1.24□□□□□ -2.21
CD44-216ENST00000525293 TRBV6-4A0A1B0GX49 114 aa1.24□□□□□ -2.21
CD44-216ENST00000525293 IGKV2-29A2NJV5 120 aaPredicted RBP1.24□□□□□ -2.21
CD44-216ENST00000525293 LOC730098B7Z3J9 87 aa1.24□□□□□ -2.21
CD44-216ENST00000525293 M0R2N4 97 aa1.24□□□□□ -2.21
CD44-216ENST00000525293 CRIP1P50238 77 aa1.24□□□□□ -2.21
CD44-216ENST00000525293 PRB3Q04118 309 aaPredicted RBP1.24□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms