RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 Q8NAQ8 132 aa11.21□□□□□ -0.61
PCDHA3-201ENST00000522353 C16orf90A8MZG2 172 aa11.2□□□□□ -0.62
PCDHA3-201ENST00000522353 C6orf48Q9UBA6 75 aa11.19□□□□□ -0.62
PCDHA3-201ENST00000522353 TRBV7-7A0A0K0K1E9 115 aa11.18□□□□□ -0.62
PCDHA3-201ENST00000522353 RETNLBQ9BQ08 111 aa11.18□□□□□ -0.62
PCDHA3-201ENST00000522353 RTL8CO15255 209 aa11.18□□□□□ -0.62
PCDHA3-201ENST00000522353 H0Y9P7 68 aa11.18□□□□□ -0.62
PCDHA3-201ENST00000522353 HCG22E2RYF7 251 aa11.17□□□□□ -0.62
PCDHA3-201ENST00000522353 LINC00846Q9NV44 126 aa11.17□□□□□ -0.62
PCDHA3-201ENST00000522353 HECTD1Q9ULT8 2610 aa11.16□□□□□ -0.62
PCDHA3-201ENST00000522353 LINC00588Q9Y4M8 146 aa11.16□□□□□ -0.62
PCDHA3-201ENST00000522353 DEFB116Q30KQ4 102 aa11.16□□□□□ -0.62
PCDHA3-201ENST00000522353 Q6ZRP5 223 aa11.16□□□□□ -0.62
PCDHA3-201ENST00000522353 CRYGAP11844 174 aa11.15□□□□□ -0.62
PCDHA3-201ENST00000522353 PCOTHQ58A44 107 aa11.15□□□□□ -0.62
PCDHA3-201ENST00000522353 SPACA4Q8TDM5 124 aa11.15□□□□□ -0.62
PCDHA3-201ENST00000522353 IGLV5-45A0A087WSX0 123 aa11.15□□□□□ -0.62
PCDHA3-201ENST00000522353 CXCL6P80162 114 aa11.15□□□□□ -0.62
PCDHA3-201ENST00000522353 MOBPQ13875 183 aa11.14□□□□□ -0.63
PCDHA3-201ENST00000522353 MGAM2Q2M2H8 2515 aa11.14□□□□□ -0.63
PCDHA3-201ENST00000522353 KIAA0087Q14695 138 aa11.14□□□□□ -0.63
PCDHA3-201ENST00000522353 KLK9Q2XQG4 91 aa11.13□□□□□ -0.63
PCDHA3-201ENST00000522353 TMEM254Q8TBM7 123 aa11.13□□□□□ -0.63
PCDHA3-201ENST00000522353 PTPRBP23467 1997 aa11.12□□□□□ -0.63
PCDHA3-201ENST00000522353 hDV103S1A0JD37 113 aa11.11□□□□□ -0.63
PCDHA3-201ENST00000522353 SPINK1P00995 79 aa11.1□□□□□ -0.63
PCDHA3-201ENST00000522353 SOSTDC1Q6X4U4 206 aa11.1□□□□□ -0.63
PCDHA3-201ENST00000522353 USP24Q9UPU5 2620 aa11.1□□□□□ -0.63
PCDHA3-201ENST00000522353 CDIP1Q9H305 208 aa11.09□□□□□ -0.63
PCDHA3-201ENST00000522353 A0A1B0GW54 56 aa11.08□□□□□ -0.63
PCDHA3-201ENST00000522353 PHF5AQ7RTV0 110 aaKnown RBP11.08□□□□□ -0.64
PCDHA3-201ENST00000522353 DNAH10OSP0CZ25 163 aa11.08□□□□□ -0.64
PCDHA3-201ENST00000522353 GVQW2A0A096LPI5 108 aaPredicted RBP11.08□□□□□ -0.64
PCDHA3-201ENST00000522353 SPATA3Q8NHX4 192 aa11.07□□□□□ -0.64
PCDHA3-201ENST00000522353 IGKV2D-30A0A075B6S6 120 aa11.07□□□□□ -0.64
PCDHA3-201ENST00000522353 PLA2G1BP04054 148 aaKnown RBP11.07□□□□□ -0.64
PCDHA3-201ENST00000522353 IGKV2-30P06310 120 aa11.07□□□□□ -0.64
PCDHA3-201ENST00000522353 TYMSOSQ8TAI1 123 aa11.07□□□□□ -0.64
PCDHA3-201ENST00000522353 Q8NBF4 154 aa11.06□□□□□ -0.64
PCDHA3-201ENST00000522353 GOLGB1Q14789 3259 aaKnown RBP11.05□□□□□ -0.64
PCDHA3-201ENST00000522353 ELOF1P60002 83 aaKnown RBP11.05□□□□□ -0.64
PCDHA3-201ENST00000522353 Q6ZRX8 168 aa11.05□□□□□ -0.64
PCDHA3-201ENST00000522353 Q9UF83 564 aa11.05□□□□□ -0.64
PCDHA3-201ENST00000522353 COL27A1Q8IZC6 1860 aaPredicted RBP11.04□□□□□ -0.64
PCDHA3-201ENST00000522353 C1orf64Q8NEQ6 169 aa11.04□□□□□ -0.64
PCDHA3-201ENST00000522353 C1orf195Q5TG92 126 aa11.04□□□□□ -0.64
PCDHA3-201ENST00000522353 K7EIL1 84 aa11.03□□□□□ -0.64
PCDHA3-201ENST00000522353 EPM2AB3EWF7 344 aa11.03□□□□□ -0.64
PCDHA3-201ENST00000522353 TP53AIP1Q9HCN2 124 aa11.03□□□□□ -0.64
PCDHA3-201ENST00000522353 PRO0461Q9UI25 63 aa11.02□□□□□ -0.64
PCDHA3-201ENST00000522353 BCE1O60756 84 aa11□□□□□ -0.65
PCDHA3-201ENST00000522353 J3QL48 77 aa11□□□□□ -0.65
PCDHA3-201ENST00000522353 SMCPP49901 116 aaPredicted RBP10.99□□□□□ -0.65
PCDHA3-201ENST00000522353 PMAIP1Q13794 54 aa10.99□□□□□ -0.65
PCDHA3-201ENST00000522353 A0A096LNT2 108 aa10.99□□□□□ -0.65
PCDHA3-201ENST00000522353 SMIM29Q86T20 159 aa10.98□□□□□ -0.65
PCDHA3-201ENST00000522353 MAST4O15021 2626 aa10.98□□□□□ -0.65
PCDHA3-201ENST00000522353 C19orf73Q9NVV2 129 aa10.97□□□□□ -0.65
PCDHA3-201ENST00000522353 CHTF8P0CG12 524 aa10.97□□□□□ -0.65
PCDHA3-201ENST00000522353 LINC00476Q8WZB0 136 aa10.97□□□□□ -0.65
PCDHA3-201ENST00000522353 PSPHP1O15172 72 aa10.96□□□□□ -0.66
PCDHA3-201ENST00000522353 RPL37AP61513 92 aaKnown RBP10.96□□□□□ -0.66
PCDHA3-201ENST00000522353 CSNK1G2-AS1Q8NCQ2 148 aa10.95□□□□□ -0.66
PCDHA3-201ENST00000522353 FAM218AQ96MZ4 157 aa10.95□□□□□ -0.66
PCDHA3-201ENST00000522353 KRTAP10-11P60412 298 aa10.95□□□□□ -0.66
PCDHA3-201ENST00000522353 C7orf65Q6ZTY9 151 aa10.93□□□□□ -0.66
PCDHA3-201ENST00000522353 LOC110117498A0A087WWA1 95 aa10.93□□□□□ -0.66
PCDHA3-201ENST00000522353 LINC00313P59037 77 aa10.93□□□□□ -0.66
PCDHA3-201ENST00000522353 ATRQ13535 2644 aa10.92□□□□□ -0.66
PCDHA3-201ENST00000522353 Q6ZQT0 140 aa10.92□□□□□ -0.66
PCDHA3-201ENST00000522353 H3BPC8 53 aa10.9□□□□□ -0.66
PCDHA3-201ENST00000522353 PCSK5Q92824 1860 aa10.9□□□□□ -0.66
PCDHA3-201ENST00000522353 VPREB1P12018 145 aa10.89□□□□□ -0.67
PCDHA3-201ENST00000522353 ST20-AS1Q8NBB2 130 aa10.88□□□□□ -0.67
PCDHA3-201ENST00000522353 ACYP2P14621 99 aa10.88□□□□□ -0.67
PCDHA3-201ENST00000522353 ATP11AUNQ6ZP68 121 aa10.88□□□□□ -0.67
PCDHA3-201ENST00000522353 TM2D3Q9BRN9 247 aa10.85□□□□□ -0.67
PCDHA3-201ENST00000522353 A0A1B0GU69 56 aa10.83□□□□□ -0.68
PCDHA3-201ENST00000522353 IGLV6-57P01721 117 aa10.83□□□□□ -0.68
PCDHA3-201ENST00000522353 PRR34Q9NV39 138 aa10.83□□□□□ -0.68
PCDHA3-201ENST00000522353 C8orf87E5RJ46 101 aa10.83□□□□□ -0.68
PCDHA3-201ENST00000522353 KRTAP10-3P60369 221 aa10.83□□□□□ -0.68
PCDHA3-201ENST00000522353 HELZ2Q9BYK8 2649 aaKnown RBP10.82□□□□□ -0.68
PCDHA3-201ENST00000522353 TRBV7-4A0A0J9YYF1 115 aa10.82□□□□□ -0.68
PCDHA3-201ENST00000522353 TRAV22A0A0B4J277 110 aa10.82□□□□□ -0.68
PCDHA3-201ENST00000522353 LINC00336Q6ZUF6 198 aa10.82□□□□□ -0.68
PCDHA3-201ENST00000522353 Q96NJ1 140 aa10.82□□□□□ -0.68
PCDHA3-201ENST00000522353 LITAFQ99732 161 aa10.82□□□□□ -0.68
PCDHA3-201ENST00000522353 A0A087WTM6 91 aa10.81□□□□□ -0.68
PCDHA3-201ENST00000522353 IGLV1-50A0A075B6I6 118 aa10.81□□□□□ -0.68
PCDHA3-201ENST00000522353 FAM168BA1KXE4 195 aa10.81□□□□□ -0.68
PCDHA3-201ENST00000522353 KCNQ1DNQ9H478 68 aa10.79□□□□□ -0.68
PCDHA3-201ENST00000522353 SPAG11AQ6PDA7 123 aa10.79□□□□□ -0.68
PCDHA3-201ENST00000522353 LINC00612Q8N6U2 182 aa10.79□□□□□ -0.68
PCDHA3-201ENST00000522353 SERTAD4-AS1Q5TG53 156 aa10.79□□□□□ -0.68
PCDHA3-201ENST00000522353 GIG44P09565 113 aaPredicted RBP10.78□□□□□ -0.68
PCDHA3-201ENST00000522353 SSBP3-AS1Q7Z2R9 100 aa10.77□□□□□ -0.68
PCDHA3-201ENST00000522353 C9orf163Q8N9P6 203 aa10.77□□□□□ -0.69
PCDHA3-201ENST00000522353 KRTAP1-3Q8IUG1 177 aa10.77□□□□□ -0.69
PCDHA3-201ENST00000522353 ZNF861PO60384 105 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms