RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 PRYO14603 147 aa9.57□□□□□ -0.88
SYNPO-205ENST00000522122 CDH23Q9H251 3354 aa9.56□□□□□ -0.88
SYNPO-205ENST00000522122 TMEM254Q8TBM7 123 aa9.55□□□□□ -0.88
SYNPO-205ENST00000522122 A6NED7 52 aa9.55□□□□□ -0.88
SYNPO-205ENST00000522122 A0A087WSZ3 146 aa9.54□□□□□ -0.88
SYNPO-205ENST00000522122 NHLRC4P0CG21 123 aaPredicted RBP9.54□□□□□ -0.88
SYNPO-205ENST00000522122 CRYGAP11844 174 aa9.54□□□□□ -0.88
SYNPO-205ENST00000522122 LINC01600Q96MT4 127 aa9.54□□□□□ -0.88
SYNPO-205ENST00000522122 FSHBP01225 129 aa9.54□□□□□ -0.88
SYNPO-205ENST00000522122 CXCL6P80162 114 aa9.54□□□□□ -0.88
SYNPO-205ENST00000522122 SMCR5Q8TEV8 140 aa9.54□□□□□ -0.88
SYNPO-205ENST00000522122 RANBP2P49792 3224 aaKnown RBP9.54□□□□□ -0.88
SYNPO-205ENST00000522122 LAMA3Q16787 3333 aa9.53□□□□□ -0.88
SYNPO-205ENST00000522122 Q9BRP9 147 aa9.52□□□□□ -0.88
SYNPO-205ENST00000522122 DNAH14Q0VDD8 3507 aa9.52□□□□□ -0.89
SYNPO-205ENST00000522122 LAMA2P24043 3122 aaKnown RBP9.51□□□□□ -0.89
SYNPO-205ENST00000522122 SPATA3Q8NHX4 192 aa9.51□□□□□ -0.89
SYNPO-205ENST00000522122 PRR15LQ9BU68 103 aa9.51□□□□□ -0.89
SYNPO-205ENST00000522122 UNC80Q8N2C7 3258 aa9.51□□□□□ -0.89
SYNPO-205ENST00000522122 X6R8D5 127 aa9.5□□□□□ -0.89
SYNPO-205ENST00000522122 C6orf48Q9UBA6 75 aa9.5□□□□□ -0.89
SYNPO-205ENST00000522122 ESRGQ1W209 222 aa9.49□□□□□ -0.89
SYNPO-205ENST00000522122 F8P00451 2351 aa9.49□□□□□ -0.89
SYNPO-205ENST00000522122 C22orf24Q9Y442 160 aa9.48□□□□□ -0.89
SYNPO-205ENST00000522122 NUPR2A6NF83 97 aa9.48□□□□□ -0.89
SYNPO-205ENST00000522122 LY6G6CO95867 125 aa9.48□□□□□ -0.89
SYNPO-205ENST00000522122 LINC01556Q5JQF7 62 aa9.48□□□□□ -0.89
SYNPO-205ENST00000522122 DEFB116Q30KQ4 102 aa9.48□□□□□ -0.89
SYNPO-205ENST00000522122 KIAA0087Q14695 138 aa9.47□□□□□ -0.89
SYNPO-205ENST00000522122 PRLHP81277 87 aa9.46□□□□□ -0.89
SYNPO-205ENST00000522122 C1orf195Q5TG92 126 aa9.46□□□□□ -0.9
SYNPO-205ENST00000522122 HCG22E2RYF7 251 aa9.45□□□□□ -0.9
SYNPO-205ENST00000522122 BCE1O60756 84 aa9.44□□□□□ -0.9
SYNPO-205ENST00000522122 IGHV6-1A0A0B4J1U7 121 aa9.44□□□□□ -0.9
SYNPO-205ENST00000522122 RPS28P62857 69 aaKnown RBP9.43□□□□□ -0.9
SYNPO-205ENST00000522122 TRBV7-6A0A0J9YX20 115 aa9.43□□□□□ -0.9
SYNPO-205ENST00000522122 H0Y9P7 68 aa9.43□□□□□ -0.9
SYNPO-205ENST00000522122 K7ERS5 55 aa9.43□□□□□ -0.9
SYNPO-205ENST00000522122 Q6ZQT0 140 aa9.42□□□□□ -0.9
SYNPO-205ENST00000522122 ELOF1P60002 83 aaKnown RBP9.42□□□□□ -0.9
SYNPO-205ENST00000522122 CIRBP-AS1Q8TBR5 109 aa9.42□□□□□ -0.9
SYNPO-205ENST00000522122 FAM104AQ969W3 186 aa9.42□□□□□ -0.9
SYNPO-205ENST00000522122 LINC00167Q96N53 147 aa9.42□□□□□ -0.9
SYNPO-205ENST00000522122 H3BNG1 76 aa9.42□□□□□ -0.9
SYNPO-205ENST00000522122 A0A096LNT2 108 aa9.41□□□□□ -0.9
SYNPO-205ENST00000522122 USP24Q9UPU5 2620 aa9.41□□□□□ -0.9
SYNPO-205ENST00000522122 PCOTHQ58A44 107 aa9.41□□□□□ -0.9
SYNPO-205ENST00000522122 LOC110117498A0A087WWA1 95 aa9.4□□□□□ -0.9
SYNPO-205ENST00000522122 SMIM29Q86T20 159 aa9.39□□□□□ -0.91
SYNPO-205ENST00000522122 hDV103S1A0JD37 113 aa9.38□□□□□ -0.91
SYNPO-205ENST00000522122 PSPHP1O15172 72 aa9.38□□□□□ -0.91
SYNPO-205ENST00000522122 A0A1B0GW54 56 aa9.38□□□□□ -0.91
SYNPO-205ENST00000522122 IGLV5-52A0A0A0MRZ9 124 aa9.38□□□□□ -0.91
SYNPO-205ENST00000522122 FLNBO75369 2602 aaKnown RBP9.38□□□□□ -0.91
SYNPO-205ENST00000522122 Q8NAQ8 132 aa9.37□□□□□ -0.91
SYNPO-205ENST00000522122 PMAIP1Q13794 54 aa9.37□□□□□ -0.91
SYNPO-205ENST00000522122 CSNK1G2-AS1Q8NCQ2 148 aa9.36□□□□□ -0.91
SYNPO-205ENST00000522122 XIRP2A4UGR9 3374 aa9.35□□□□□ -0.91
SYNPO-205ENST00000522122 GVQW2A0A096LPI5 108 aaPredicted RBP9.34□□□□□ -0.91
SYNPO-205ENST00000522122 Q8NBF4 154 aa9.34□□□□□ -0.91
SYNPO-205ENST00000522122 SPTBN5Q9NRC6 3674 aaKnown RBP9.34□□□□□ -0.91
SYNPO-205ENST00000522122 Q6ZRX8 168 aa9.34□□□□□ -0.91
SYNPO-205ENST00000522122 C1orf64Q8NEQ6 169 aa9.34□□□□□ -0.91
SYNPO-205ENST00000522122 SZT2Q5T011 3432 aa9.33□□□□□ -0.92
SYNPO-205ENST00000522122 GIG44P09565 113 aaPredicted RBP9.32□□□□□ -0.92
SYNPO-205ENST00000522122 IGLV6-57P01721 117 aa9.31□□□□□ -0.92
SYNPO-205ENST00000522122 C1orf134Q5TEV5 83 aa9.3□□□□□ -0.92
SYNPO-205ENST00000522122 VPREB1P12018 145 aa9.3□□□□□ -0.92
SYNPO-205ENST00000522122 TM2D3Q9BRN9 247 aa9.29□□□□□ -0.92
SYNPO-205ENST00000522122 OBSCN-AS1Q96MR7 158 aa9.29□□□□□ -0.92
SYNPO-205ENST00000522122 LINC00476Q8WZB0 136 aa9.29□□□□□ -0.92
SYNPO-205ENST00000522122 HECTD1Q9ULT8 2610 aa9.28□□□□□ -0.92
SYNPO-205ENST00000522122 MGAM2Q2M2H8 2515 aa9.27□□□□□ -0.92
SYNPO-205ENST00000522122 Q6ZRP5 223 aa9.27□□□□□ -0.92
SYNPO-205ENST00000522122 ST20-AS1Q8NBB2 130 aa9.27□□□□□ -0.93
SYNPO-205ENST00000522122 LINC00612Q8N6U2 182 aa9.26□□□□□ -0.93
SYNPO-205ENST00000522122 PRO0628Q9UI54 55 aa9.26□□□□□ -0.93
SYNPO-205ENST00000522122 RETNLBQ9BQ08 111 aa9.26□□□□□ -0.93
SYNPO-205ENST00000522122 C19orf73Q9NVV2 129 aa9.26□□□□□ -0.93
SYNPO-205ENST00000522122 C9orf129Q5T035 196 aaKnown RBP9.26□□□□□ -0.93
SYNPO-205ENST00000522122 C4orf26Q17RF5 130 aa9.25□□□□□ -0.93
SYNPO-205ENST00000522122 LINC00588Q9Y4M8 146 aa9.25□□□□□ -0.93
SYNPO-205ENST00000522122 LAMA1P25391 3075 aa9.24□□□□□ -0.93
SYNPO-205ENST00000522122 MDFIQ99750 246 aa9.24□□□□□ -0.93
SYNPO-205ENST00000522122 LIMD2Q9BT23 127 aa9.24□□□□□ -0.93
SYNPO-205ENST00000522122 TP53AIP1Q9HCN2 124 aa9.24□□□□□ -0.93
SYNPO-205ENST00000522122 KRTAP24-1Q3LI83 254 aa9.23□□□□□ -0.93
SYNPO-205ENST00000522122 PHF5AQ7RTV0 110 aaKnown RBP9.22□□□□□ -0.93
SYNPO-205ENST00000522122 C16orf90A8MZG2 172 aa9.22□□□□□ -0.93
SYNPO-205ENST00000522122 VCANP13611 3396 aa9.22□□□□□ -0.93
SYNPO-205ENST00000522122 DNAH10OSP0CZ25 163 aa9.22□□□□□ -0.93
SYNPO-205ENST00000522122 MOBPQ13875 183 aa9.22□□□□□ -0.93
SYNPO-205ENST00000522122 PRR34Q9NV39 138 aa9.21□□□□□ -0.94
SYNPO-205ENST00000522122 TRIOO75962 3097 aa9.21□□□□□ -0.94
SYNPO-205ENST00000522122 EPM2AB3EWF7 344 aa9.21□□□□□ -0.94
SYNPO-205ENST00000522122 LINC00528Q8N1L1 170 aa9.2□□□□□ -0.94
SYNPO-205ENST00000522122 CENPEQ02224 2701 aa9.2□□□□□ -0.94
SYNPO-205ENST00000522122 TRBV7-4A0A0J9YYF1 115 aa9.2□□□□□ -0.94
SYNPO-205ENST00000522122 H3BPC8 53 aa9.2□□□□□ -0.94
SYNPO-205ENST00000522122 REV3LO60673 3130 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms