RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 GAFA1Q96PS6 74 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 CNFNQ9BYD5 112 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 UBL5Q9BZL1 73 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 DOCK11Q5JSL3 2073 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 NINQ8N4C6 2090 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 ZFHX2Q9C0A1 2572 aaPredicted RBP0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 A0A1B0GUL6 1792 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 DOT1LQ8TEK3 1739 aa0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 TNRC6CQ9HCJ0 1690 aaKnown RBP0.24□□□□□ -2.37
RNU4-54P-201ENST00000516428 KIAA0100Q14667 2235 aaKnown RBP0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 SPAG17Q6Q759 2223 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 ABCC8Q09428 1581 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 IQGAP2Q13576 1575 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 RP1P56715 2156 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 SLIT1O75093 1534 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 TOP2AP11388 1531 aaKnown RBP0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 CPS1P31327 1500 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 KIAA0586Q9BVV6 1533 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 MYO7BQ6PIF6 2116 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 TET1Q8NFU7 2136 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 UBR3Q6ZT12 1888 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 FN1P02751 2386 aaKnown RBP0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 TSC2P49815 1807 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 SPTY2D1-AS1A0A0U1RR47 76 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 LINC01549A6NIU2 74 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 CPSF4LA6NMK7 179 aaKnown RBP0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 SNRPGP15A8MWD9 76 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 NDUFA4O00483 81 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 MRPL33O75394 65 aaKnown RBP0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 KRTAP12-1P59990 96 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 KRTAP12-4P60329 112 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 SERF2P84101 59 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 DEFB114Q30KQ6 69 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 KRTAP6-3Q3LI67 103 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 PIGYQ3MUY2 71 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 SSBP3-AS1Q7Z2R9 100 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 USMG5Q96IX5 58 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 FXYD6Q9H0Q3 95 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 KCNQ1DNQ9H478 68 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 C10orf95Q9H7T3 257 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 TP53AIP1Q9HCN2 124 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 UNC13CQ8NB66 2214 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 DDX60LQ5H9U9 1706 aaKnown RBP0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 MED13Q9UHV7 2174 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 FAM208AQ9UK61 1670 aaKnown RBP0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 SPTBP11277 2137 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 ESPL1Q14674 2120 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 EFCAB6Q5THR3 1501 aa0.23□□□□□ -2.37
RNU4-54P-201ENST00000516428 OTOGLQ3ZCN5 2332 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 PLXNB2O15031 1838 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 DIDO1Q9BTC0 2240 aaKnown RBP0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 DOCK10Q96BY6 2186 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 ANKRD36CQ5JPF3 1778 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 DEFB131BA0A096LNP1 70 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 I3L2K1 104 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 I3L3M4 83 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 K7EMI3 77 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 K7EQZ3 153 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 CCL22O00626 93 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 LYNX1P0DP58 116 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 SPINK9Q5DT21 86 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 ENHOQ6UWT2 76 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 COX6B2Q6YFQ2 88 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 DEFB123Q8N688 67 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 FAM103A1Q9BTL3 118 aaKnown RBP0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 LCE3DQ9BYE3 92 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 KRTAP4-1Q9BYQ7 146 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 NMES1Q9C002 83 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 CMC2Q9NRP2 79 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 CRIPTQ9P021 101 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 CRCT1Q9UGL9 99 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 PRO0255Q9UI72 69 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 CACNA1BQ00975 2339 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 ABCA4P78363 2273 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 ICE1Q9Y2F5 2266 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 RTTNQ86VV8 2226 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 AGLP35573 1532 aa0.22□□□□□ -2.37
RNU4-54P-201ENST00000516428 NCOA6Q14686 2063 aaPredicted RBP0.22□□□□□ -2.38
RNU4-54P-201ENST00000516428 C4AP0C0L4 1744 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 C4BP0C0L5 1744 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 TJP1Q07157 1748 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 DEPDC5O75140 1603 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 FREM1Q5H8C1 2179 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 ETDCA0A1B0GVM5 59 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 COX6B1P14854 86 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 PLNP26678 52 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 FCER1GP30273 86 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 KRTAP12-3P60328 96 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 COX6A2Q02221 97 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 Q5VSD8 79 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 NCBP2-AS2Q69YL0 99 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 Q6ZSA8 131 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 Q8IZM0 81 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 MRPL34Q9BQ48 92 aaKnown RBP0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 ATP7AQ04656 1500 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 TOGARAM1Q9Y4F4 1720 aa0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 INTS1Q8N201 2190 aaKnown RBP0.21□□□□□ -2.38
RNU4-54P-201ENST00000516428 FBN3Q75N90 2809 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 CNTRLQ7Z7A1 2325 aa0.2□□□□□ -2.38
RNU4-54P-201ENST00000516428 TRPM2O94759 1503 aa0.2□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms