RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 IGHV3-74A0A0B4J1X5 117 aa4.7□□□□□ -1.66
NIPBL-208ENST00000514335 IGHV4-38-2P0DP08 117 aa4.7□□□□□ -1.66
NIPBL-208ENST00000514335 CSNK1G2-AS1Q8NCQ2 148 aa4.7□□□□□ -1.66
NIPBL-208ENST00000514335 LEAP2Q969E1 77 aa4.7□□□□□ -1.66
NIPBL-208ENST00000514335 RNASE1P07998 156 aaKnown RBP4.69□□□□□ -1.66
NIPBL-208ENST00000514335 ELOF1P60002 83 aaKnown RBP4.69□□□□□ -1.66
NIPBL-208ENST00000514335 RPL39P62891 51 aaKnown RBP4.69□□□□□ -1.66
NIPBL-208ENST00000514335 PLAC8Q9NZF1 115 aa4.69□□□□□ -1.66
NIPBL-208ENST00000514335 LRBAP50851 2863 aa4.69□□□□□ -1.66
NIPBL-208ENST00000514335 LINC00483Q53H64 154 aa4.69□□□□□ -1.66
NIPBL-208ENST00000514335 LINC01006Q8NI28 216 aa4.69□□□□□ -1.66
NIPBL-208ENST00000514335 KLK9Q9UKQ9 250 aa4.69□□□□□ -1.66
NIPBL-208ENST00000514335 NBASA2RRP1 2371 aa4.69□□□□□ -1.66
NIPBL-208ENST00000514335 ANKHD1Q8IWZ3 2542 aaKnown RBP4.69□□□□□ -1.66
NIPBL-208ENST00000514335 IGHV3-53P01767 116 aa4.69□□□□□ -1.66
NIPBL-208ENST00000514335 UTP20O75691 2785 aaKnown RBP4.68□□□□□ -1.66
NIPBL-208ENST00000514335 IGKV3D-15A0A087WSY6 115 aa4.68□□□□□ -1.66
NIPBL-208ENST00000514335 IGHV7-81A0A0B4J1V7 117 aa4.68□□□□□ -1.66
NIPBL-208ENST00000514335 LINC00167Q96N53 147 aa4.68□□□□□ -1.66
NIPBL-208ENST00000514335 IGLV4-60A0A075B6I1 120 aa4.68□□□□□ -1.66
NIPBL-208ENST00000514335 IGHV3-11P01762 117 aa4.68□□□□□ -1.66
NIPBL-208ENST00000514335 KRTAP1-1Q07627 177 aa4.68□□□□□ -1.66
NIPBL-208ENST00000514335 Q8N9L7 120 aa4.68□□□□□ -1.66
NIPBL-208ENST00000514335 DEFB104AQ8WTQ1 72 aa4.68□□□□□ -1.66
NIPBL-208ENST00000514335 RPL39LQ96EH5 51 aaKnown RBP4.68□□□□□ -1.66
NIPBL-208ENST00000514335 LINC01558Q9Y6Z2 57 aa4.68□□□□□ -1.66
NIPBL-208ENST00000514335 CELSR3Q9NYQ7 3312 aa4.67□□□□□ -1.66
NIPBL-208ENST00000514335 MTORP42345 2549 aa4.67□□□□□ -1.66
NIPBL-208ENST00000514335 IGKV3-20P01619 116 aa4.67□□□□□ -1.66
NIPBL-208ENST00000514335 IGHV3-49A0A0A0MS15 119 aa4.67□□□□□ -1.66
NIPBL-208ENST00000514335 SPINK14Q6IE38 97 aa4.67□□□□□ -1.66
NIPBL-208ENST00000514335 IGHV3-21A0A0B4J1V1 117 aa4.66□□□□□ -1.66
NIPBL-208ENST00000514335 LCE2AQ5TA79 106 aaPredicted RBP4.66□□□□□ -1.66
NIPBL-208ENST00000514335 FN1P02751 2386 aaKnown RBP4.66□□□□□ -1.66
NIPBL-208ENST00000514335 PDZD2O15018 2839 aa4.66□□□□□ -1.66
NIPBL-208ENST00000514335 A0A096LNT2 108 aa4.66□□□□□ -1.66
NIPBL-208ENST00000514335 RNASE3P12724 160 aaKnown RBP4.66□□□□□ -1.66
NIPBL-208ENST00000514335 LYPD2Q6UXB3 125 aa4.66□□□□□ -1.66
NIPBL-208ENST00000514335 LINC00612Q8N6U2 182 aa4.66□□□□□ -1.66
NIPBL-208ENST00000514335 H0YGX0 51 aa4.66□□□□□ -1.66
NIPBL-208ENST00000514335 NDUFA4O00483 81 aa4.66□□□□□ -1.66
NIPBL-208ENST00000514335 DPM3Q9P2X0 92 aa4.66□□□□□ -1.66
NIPBL-208ENST00000514335 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.65□□□□□ -1.66
NIPBL-208ENST00000514335 FAM74A4Q5TZK3 123 aa4.65□□□□□ -1.66
NIPBL-208ENST00000514335 CIRBP-AS1Q8TBR5 109 aa4.65□□□□□ -1.66
NIPBL-208ENST00000514335 WFDC10AQ9H1F0 79 aa4.65□□□□□ -1.66
NIPBL-208ENST00000514335 IGHV7-4-1A0A0J9YVY3 117 aa4.65□□□□□ -1.67
NIPBL-208ENST00000514335 IGKV4-1P06312 121 aa4.65□□□□□ -1.67
NIPBL-208ENST00000514335 CNBPP62633 177 aaKnown RBP4.65□□□□□ -1.67
NIPBL-208ENST00000514335 IGLV5-52A0A0A0MRZ9 124 aa4.64□□□□□ -1.67
NIPBL-208ENST00000514335 IGHV3-15A0A0B4J1V0 119 aa4.64□□□□□ -1.67
NIPBL-208ENST00000514335 SMIM11BQ8TCY0 68 aa4.64□□□□□ -1.67
NIPBL-208ENST00000514335 IGKV1D-37A0A075B6S9 117 aa4.64□□□□□ -1.67
NIPBL-208ENST00000514335 IGKV3-15P01624 115 aa4.64□□□□□ -1.67
NIPBL-208ENST00000514335 CASC10Q5T4H9 136 aa4.64□□□□□ -1.67
NIPBL-208ENST00000514335 KPRPQ5T749 579 aaPredicted RBP4.64□□□□□ -1.67
NIPBL-208ENST00000514335 GAFA1Q96PS6 74 aa4.64□□□□□ -1.67
NIPBL-208ENST00000514335 FAM215AQ9Y5M1 114 aa4.64□□□□□ -1.67
NIPBL-208ENST00000514335 LINC00959A0A1B0GUT2 108 aa4.63□□□□□ -1.67
NIPBL-208ENST00000514335 NDUFB1O75438 58 aa4.63□□□□□ -1.67
NIPBL-208ENST00000514335 PDE6GP18545 87 aa4.63□□□□□ -1.67
NIPBL-208ENST00000514335 NTM-AS1Q6ZSK4 140 aa4.63□□□□□ -1.67
NIPBL-208ENST00000514335 NPBQ8NG41 125 aa4.63□□□□□ -1.67
NIPBL-208ENST00000514335 COX7B2Q8TF08 81 aa4.63□□□□□ -1.67
NIPBL-208ENST00000514335 ABCA1O95477 2261 aa4.63□□□□□ -1.67
NIPBL-208ENST00000514335 MINOS1-NBL1R4GNA1 71 aa4.62□□□□□ -1.67
NIPBL-208ENST00000514335 CELSR2Q9HCU4 2923 aa4.62□□□□□ -1.67
NIPBL-208ENST00000514335 APCP25054 2843 aa4.62□□□□□ -1.67
NIPBL-208ENST00000514335 SMIM29Q86T20 159 aa4.62□□□□□ -1.67
NIPBL-208ENST00000514335 MUC7Q8TAX7 377 aa4.62□□□□□ -1.67
NIPBL-208ENST00000514335 K7ERS5 55 aa4.62□□□□□ -1.67
NIPBL-208ENST00000514335 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.62□□□□□ -1.67
NIPBL-208ENST00000514335 CENPEQ02224 2701 aa4.61□□□□□ -1.67
NIPBL-208ENST00000514335 LOC110117498A0A087WWA1 95 aa4.61□□□□□ -1.67
NIPBL-208ENST00000514335 DEFB112Q30KQ8 113 aa4.61□□□□□ -1.67
NIPBL-208ENST00000514335 KRTAP25-1Q3LHN0 102 aa4.61□□□□□ -1.67
NIPBL-208ENST00000514335 CAMK2N2Q96S95 79 aa4.61□□□□□ -1.67
NIPBL-208ENST00000514335 PRR34Q9NV39 138 aa4.61□□□□□ -1.67
NIPBL-208ENST00000514335 DNAH10OSP0CZ25 163 aa4.61□□□□□ -1.67
NIPBL-208ENST00000514335 ST20-AS1Q8NBB2 130 aa4.61□□□□□ -1.67
NIPBL-208ENST00000514335 PATE1Q8WXA2 126 aa4.61□□□□□ -1.67
NIPBL-208ENST00000514335 A8MUU9 505 aa4.6□□□□□ -1.67
NIPBL-208ENST00000514335 COA5Q86WW8 74 aa4.6□□□□□ -1.67
NIPBL-208ENST00000514335 LINC00467Q9BRT7 94 aa4.6□□□□□ -1.67
NIPBL-208ENST00000514335 LENEPQ9Y5L5 61 aa4.6□□□□□ -1.67
NIPBL-208ENST00000514335 BSNQ9UPA5 3926 aa4.59□□□□□ -1.67
NIPBL-208ENST00000514335 CSPG4Q6UVK1 2322 aa4.59□□□□□ -1.67
NIPBL-208ENST00000514335 TRBV6-4A0A1B0GX49 114 aa4.59□□□□□ -1.67
NIPBL-208ENST00000514335 DEFB108AA8MXU0 73 aa4.59□□□□□ -1.67
NIPBL-208ENST00000514335 MSMBP08118 114 aa4.59□□□□□ -1.67
NIPBL-208ENST00000514335 C10orf25Q5T742 122 aa4.59□□□□□ -1.67
NIPBL-208ENST00000514335 AKAP9Q99996 3911 aa4.59□□□□□ -1.67
NIPBL-208ENST00000514335 ADGRG4Q8IZF6 3080 aa4.59□□□□□ -1.68
NIPBL-208ENST00000514335 IGKV2-40A0A087WW87 121 aaPredicted RBP4.59□□□□□ -1.68
NIPBL-208ENST00000514335 H0Y9P7 68 aa4.59□□□□□ -1.68
NIPBL-208ENST00000514335 NDUFA1O15239 70 aa4.59□□□□□ -1.68
NIPBL-208ENST00000514335 IGKV2D-40P01614 121 aaPredicted RBP4.59□□□□□ -1.68
NIPBL-208ENST00000514335 DEFB126Q9BYW3 111 aa4.59□□□□□ -1.68
NIPBL-208ENST00000514335 ANK2Q01484 3957 aa4.58□□□□□ -1.68
NIPBL-208ENST00000514335 IGKV2-28A0A075B6P5 120 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms