RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 ARL17AQ8IVW1 177 aa8.35□□□□□ -1.07
LIMCH1-220ENST00000514190 LINC00308Q8TCZ7 52 aa8.35□□□□□ -1.07
LIMCH1-220ENST00000514190 PPDPFQ9H3Y8 114 aa8.35□□□□□ -1.07
LIMCH1-220ENST00000514190 GAGE2DQ9UEU5 116 aa8.35□□□□□ -1.07
LIMCH1-220ENST00000514190 EIF4EBP3O60516 100 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-220ENST00000514190 RPL18AQ02543 176 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-220ENST00000514190 GAGE2BQ13066 116 aa8.34□□□□□ -1.07
LIMCH1-220ENST00000514190 SOSTDC1Q6X4U4 206 aa8.34□□□□□ -1.07
LIMCH1-220ENST00000514190 COPS9Q8WXC6 57 aa8.34□□□□□ -1.07
LIMCH1-220ENST00000514190 KRTAP17-1Q9BYP8 105 aa8.34□□□□□ -1.07
LIMCH1-220ENST00000514190 PCLOQ9Y6V0 5065 aa8.34□□□□□ -1.08
LIMCH1-220ENST00000514190 PCP4L1A6NKN8 68 aa8.33□□□□□ -1.08
LIMCH1-220ENST00000514190 C16orf90A8MZG2 172 aa8.33□□□□□ -1.08
LIMCH1-220ENST00000514190 APOBP04114 4563 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-220ENST00000514190 GCSHP23434 173 aa8.33□□□□□ -1.08
LIMCH1-220ENST00000514190 CEND1Q8N111 149 aa8.33□□□□□ -1.08
LIMCH1-220ENST00000514190 XAGE1AQ9HD64 81 aa8.33□□□□□ -1.08
LIMCH1-220ENST00000514190 HSPG2P98160 4391 aa8.33□□□□□ -1.08
LIMCH1-220ENST00000514190 NPC2P61916 151 aa8.32□□□□□ -1.08
LIMCH1-220ENST00000514190 A0A096LNI7 61 aa8.31□□□□□ -1.08
LIMCH1-220ENST00000514190 C9orf129Q5T035 196 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-220ENST00000514190 RPL24P83731 157 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-220ENST00000514190 IGKV2-24A0A0C4DH68 120 aa8.29□□□□□ -1.08
LIMCH1-220ENST00000514190 M0R143 59 aa8.29□□□□□ -1.08
LIMCH1-220ENST00000514190 BVES-AS1Q5T3Y7 98 aa8.29□□□□□ -1.08
LIMCH1-220ENST00000514190 LINC00474Q9P2X8 69 aa8.29□□□□□ -1.08
LIMCH1-220ENST00000514190 PLA2G2DQ9UNK4 145 aa8.29□□□□□ -1.08
LIMCH1-220ENST00000514190 ABCA13Q86UQ4 5058 aa8.29□□□□□ -1.08
LIMCH1-220ENST00000514190 A4D1N5 150 aa8.28□□□□□ -1.08
LIMCH1-220ENST00000514190 NDUFC2O95298 119 aa8.28□□□□□ -1.08
LIMCH1-220ENST00000514190 CHTF8P0CG12 524 aa8.28□□□□□ -1.08
LIMCH1-220ENST00000514190 HINT1P49773 126 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-220ENST00000514190 FXYD2P54710 66 aa8.28□□□□□ -1.08
LIMCH1-220ENST00000514190 Q8NDZ9 215 aa8.27□□□□□ -1.09
LIMCH1-220ENST00000514190 TMEM238LA0A1B0GVL6 79 aa8.26□□□□□ -1.09
LIMCH1-220ENST00000514190 A6NJY4 79 aa8.26□□□□□ -1.09
LIMCH1-220ENST00000514190 PANO1I0J062 215 aa8.26□□□□□ -1.09
LIMCH1-220ENST00000514190 VPREB1P12018 145 aa8.26□□□□□ -1.09
LIMCH1-220ENST00000514190 KRTAP10-1P60331 282 aa8.26□□□□□ -1.09
LIMCH1-220ENST00000514190 PRR3P79522 188 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-220ENST00000514190 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-220ENST00000514190 A0A1W2PNN7 141 aa8.25□□□□□ -1.09
LIMCH1-220ENST00000514190 SERTAD4-AS1Q5TG53 156 aa8.25□□□□□ -1.09
LIMCH1-220ENST00000514190 KRTAP7-1Q8IUC3 87 aa8.25□□□□□ -1.09
LIMCH1-220ENST00000514190 SPACA4Q8TDM5 124 aa8.25□□□□□ -1.09
LIMCH1-220ENST00000514190 IGLV5-37A0A075B6J1 123 aa8.24□□□□□ -1.09
LIMCH1-220ENST00000514190 IGKV2-28A0A075B6P5 120 aa8.24□□□□□ -1.09
LIMCH1-220ENST00000514190 FAM168BA1KXE4 195 aa8.24□□□□□ -1.09
LIMCH1-220ENST00000514190 IGKV2D-28P01615 120 aa8.24□□□□□ -1.09
LIMCH1-220ENST00000514190 CFC1BP0CG36 223 aa8.24□□□□□ -1.09
LIMCH1-220ENST00000514190 CFC1P0CG37 223 aa8.24□□□□□ -1.09
LIMCH1-220ENST00000514190 DPH3Q96FX2 82 aa8.24□□□□□ -1.09
LIMCH1-220ENST00000514190 TRBV10-2A0A0K0K1G8 114 aa8.23□□□□□ -1.09
LIMCH1-220ENST00000514190 EPM2AB3EWF7 344 aa8.23□□□□□ -1.09
LIMCH1-220ENST00000514190 A0A1B0GWB2 263 aa8.22□□□□□ -1.09
LIMCH1-220ENST00000514190 M0R378 163 aa8.22□□□□□ -1.09
LIMCH1-220ENST00000514190 BATFQ16520 125 aa8.22□□□□□ -1.09
LIMCH1-220ENST00000514190 Q6ZSA8 131 aa8.22□□□□□ -1.09
LIMCH1-220ENST00000514190 NKAPP1Q8N9T2 125 aa8.22□□□□□ -1.09
LIMCH1-220ENST00000514190 SNHG12Q9BXW3 62 aa8.22□□□□□ -1.09
LIMCH1-220ENST00000514190 NHP2Q9NX24 153 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-220ENST00000514190 FAM30AQ9NZY2 134 aa8.22□□□□□ -1.09
LIMCH1-220ENST00000514190 C22orf24Q9Y442 160 aa8.22□□□□□ -1.09
LIMCH1-220ENST00000514190 DNAH8Q96JB1 4490 aa8.22□□□□□ -1.09
LIMCH1-220ENST00000514190 A0A087WYN8 130 aa8.21□□□□□ -1.1
LIMCH1-220ENST00000514190 A0A0B4J2C4 111 aa8.21□□□□□ -1.1
LIMCH1-220ENST00000514190 NCR3O14931 201 aa8.21□□□□□ -1.1
LIMCH1-220ENST00000514190 CDK2AP2O75956 126 aa8.21□□□□□ -1.1
LIMCH1-220ENST00000514190 FAM19A5Q7Z5A7 132 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-220ENST00000514190 TRAV13-2A0A0B4J235 113 aa8.2□□□□□ -1.1
LIMCH1-220ENST00000514190 A6NDN8 102 aa8.2□□□□□ -1.1
LIMCH1-220ENST00000514190 LINC00337Q8N6G1 96 aa8.2□□□□□ -1.1
LIMCH1-220ENST00000514190 RAB37Q96AX2 223 aa8.2□□□□□ -1.1
LIMCH1-220ENST00000514190 PLAC8Q9NZF1 115 aa8.2□□□□□ -1.1
LIMCH1-220ENST00000514190 C7orf33Q8WU49 177 aa8.19□□□□□ -1.1
LIMCH1-220ENST00000514190 PRO1854Q9UHT4 67 aa8.19□□□□□ -1.1
LIMCH1-220ENST00000514190 K7ERJ3 54 aa8.18□□□□□ -1.1
LIMCH1-220ENST00000514190 M0QXV9 152 aa8.18□□□□□ -1.1
LIMCH1-220ENST00000514190 LBHQ53QV2 105 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-220ENST00000514190 MRPL55Q7Z7F7 128 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-220ENST00000514190 OR13C6PQ8NH95 151 aa8.18□□□□□ -1.1
LIMCH1-220ENST00000514190 LINC00167Q96N53 147 aa8.18□□□□□ -1.1
LIMCH1-220ENST00000514190 GAGE10A6NGK3 116 aa8.17□□□□□ -1.1
LIMCH1-220ENST00000514190 IGLV6-57P01721 117 aa8.17□□□□□ -1.1
LIMCH1-220ENST00000514190 S100A7L2Q5SY68 101 aa8.17□□□□□ -1.1
LIMCH1-220ENST00000514190 TMEM126AQ9H061 195 aa8.17□□□□□ -1.1
LIMCH1-220ENST00000514190 TRBV10-3A0A0K0K1G6 114 aa8.16□□□□□ -1.1
LIMCH1-220ENST00000514190 RPL13AP40429 203 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-220ENST00000514190 FAT1Q14517 4588 aa8.16□□□□□ -1.1
LIMCH1-220ENST00000514190 PHF5AQ7RTV0 110 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-220ENST00000514190 CIRBP-AS1Q8TBR5 109 aa8.16□□□□□ -1.1
LIMCH1-220ENST00000514190 SCXQ7RTU7 201 aa8.15□□□□□ -1.1
LIMCH1-220ENST00000514190 IGLV1-50A0A075B6I6 118 aa8.14□□□□□ -1.11
LIMCH1-220ENST00000514190 COL5A1-AS1Q5SY13 56 aa8.14□□□□□ -1.11
LIMCH1-220ENST00000514190 RPL37AP8A6NKH3 93 aa8.13□□□□□ -1.11
LIMCH1-220ENST00000514190 H7C2G1 150 aa8.13□□□□□ -1.11
LIMCH1-220ENST00000514190 CBY1Q9Y3M2 126 aa8.13□□□□□ -1.11
LIMCH1-220ENST00000514190 SMIM11BQ8TCY0 68 aa8.12□□□□□ -1.11
LIMCH1-220ENST00000514190 KCNQ1DNQ9H478 68 aa8.12□□□□□ -1.11
LIMCH1-220ENST00000514190 TAX1BP3O14907 124 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms