RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 I3L3M4 83 aa2.33□□□□□ -2.04
USP54-217ENST00000498213 COX7A2LO14548 114 aa2.33□□□□□ -2.04
USP54-217ENST00000498213 SERF1AO75920 110 aa2.33□□□□□ -2.04
USP54-217ENST00000498213 NPYP01303 97 aa2.33□□□□□ -2.04
USP54-217ENST00000498213 MT-ND6P03923 174 aa2.33□□□□□ -2.04
USP54-217ENST00000498213 RAB4AP20338 218 aa2.33□□□□□ -2.04
USP54-217ENST00000498213 COX19Q49B96 90 aa2.33□□□□□ -2.04
USP54-217ENST00000498213 MRPL51Q4U2R6 128 aaKnown RBP2.33□□□□□ -2.04
USP54-217ENST00000498213 LINC01561Q8N1V8 128 aa2.33□□□□□ -2.04
USP54-217ENST00000498213 C18orf32Q8TCD1 76 aa2.33□□□□□ -2.04
USP54-217ENST00000498213 MRAP2Q96G30 205 aa2.33□□□□□ -2.04
USP54-217ENST00000498213 MRPL35Q9NZE8 188 aaKnown RBP2.33□□□□□ -2.04
USP54-217ENST00000498213 IGLV4-60A0A075B6I1 120 aa2.32□□□□□ -2.04
USP54-217ENST00000498213 A0A096LNI7 61 aa2.32□□□□□ -2.04
USP54-217ENST00000498213 LINC00959A0A1B0GUT2 108 aa2.32□□□□□ -2.04
USP54-217ENST00000498213 D6R8Y8 96 aa2.32□□□□□ -2.04
USP54-217ENST00000498213 RPL32P62910 135 aaKnown RBP2.32□□□□□ -2.04
USP54-217ENST00000498213 FAM104BQ5XKR9 115 aa2.32□□□□□ -2.04
USP54-217ENST00000498213 BORCS7Q96B45 105 aa2.32□□□□□ -2.04
USP54-217ENST00000498213 HIST1H2BLQ99880 126 aa2.32□□□□□ -2.04
USP54-217ENST00000498213 TMEM191AQ9H0A3 160 aa2.32□□□□□ -2.04
USP54-217ENST00000498213 CDC42SE2Q9NRR3 84 aa2.32□□□□□ -2.04
USP54-217ENST00000498213 A0A096LNJ9 63 aa2.31□□□□□ -2.04
USP54-217ENST00000498213 IGKV2-24A0A0C4DH68 120 aa2.31□□□□□ -2.04
USP54-217ENST00000498213 TRBV30A0A0K0K1B3 111 aa2.31□□□□□ -2.04
USP54-217ENST00000498213 A0A1B0GW15 77 aa2.31□□□□□ -2.04
USP54-217ENST00000498213 SDHAF1A6NFY7 115 aa2.31□□□□□ -2.04
USP54-217ENST00000498213 IGLV7-43P04211 117 aa2.31□□□□□ -2.04
USP54-217ENST00000498213 S100A8P05109 93 aa2.31□□□□□ -2.04
USP54-217ENST00000498213 MGPP08493 103 aa2.31□□□□□ -2.04
USP54-217ENST00000498213 CHTF8P0CG12 524 aa2.31□□□□□ -2.04
USP54-217ENST00000498213 UBE2D1P51668 147 aa2.31□□□□□ -2.04
USP54-217ENST00000498213 PMCHL1Q16048 86 aa2.31□□□□□ -2.04
USP54-217ENST00000498213 RNASEKQ6P5S7 137 aaKnown RBP2.31□□□□□ -2.04
USP54-217ENST00000498213 LINC00173Q6ZV60 143 aa2.31□□□□□ -2.04
USP54-217ENST00000498213 RPL39LQ96EH5 51 aaKnown RBP2.31□□□□□ -2.04
USP54-217ENST00000498213 KIR2DL4Q99706 377 aa2.31□□□□□ -2.04
USP54-217ENST00000498213 ST20Q9HBF5 79 aa2.31□□□□□ -2.04
USP54-217ENST00000498213 LOC389332A0A1B0GUA5 103 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 LINC01546A6NGU7 62 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 PCP4L1A6NKN8 68 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 K7EMI3 77 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 NDUFA1O15239 70 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 SMIM6P0DI80 62 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 FABP4P15090 132 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 PMCHP20382 165 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 G0S2P27469 103 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 CKS2P33552 79 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 IFI27P40305 119 aaPredicted RBP2.3□□□□□ -2.04
USP54-217ENST00000498213 AKR1D1P51857 326 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 POLR2KP53803 58 aaKnown RBP2.3□□□□□ -2.04
USP54-217ENST00000498213 MRPS36P82909 103 aaKnown RBP2.3□□□□□ -2.04
USP54-217ENST00000498213 KRTAP6-3Q3LI67 103 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 PYY3Q5JQD4 70 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 LCE1CQ5T751 118 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 LCE1BQ5T7P3 118 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 CLPSL2Q6UWE3 100 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 BAGE3Q86Y29 109 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 ORMDL3Q8N138 153 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 FAM19A2Q8N3H0 131 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 PRELID3AQ96N28 172 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 CAMK2N2Q96S95 79 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 C20orf78Q9BR46 151 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 SPANXA1Q9NS26 97 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 TP73-AS1Q9UF72 201 aa2.3□□□□□ -2.04
USP54-217ENST00000498213 LINC01549A6NIU2 74 aa2.29□□□□□ -2.04
USP54-217ENST00000498213 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.29□□□□□ -2.04
USP54-217ENST00000498213 PPBPP02775 128 aa2.29□□□□□ -2.04
USP54-217ENST00000498213 XCL1P47992 114 aa2.29□□□□□ -2.04
USP54-217ENST00000498213 SEC11AP67812 179 aa2.29□□□□□ -2.04
USP54-217ENST00000498213 MT1HP80294 61 aa2.29□□□□□ -2.04
USP54-217ENST00000498213 TPRXLQ17RH7 258 aa2.29□□□□□ -2.04
USP54-217ENST00000498213 FAM229BQ4G0N7 80 aa2.29□□□□□ -2.04
USP54-217ENST00000498213 C9orf116Q5BN46 136 aaPredicted RBP2.29□□□□□ -2.04
USP54-217ENST00000498213 C1orf137Q5JT78 98 aa2.29□□□□□ -2.04
USP54-217ENST00000498213 LINC00518Q8N0U6 118 aa2.29□□□□□ -2.04
USP54-217ENST00000498213 PACRGQ96M98 296 aaPredicted RBP2.29□□□□□ -2.04
USP54-217ENST00000498213 SMIM2Q9BVW6 85 aa2.29□□□□□ -2.04
USP54-217ENST00000498213 IGHV3OR16-9A0A0B4J2B5 98 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 NDUFC2-KCTD14E9PQ53 114 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 ZNF861PO60384 105 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 HSBP1O75506 76 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 LINC00614P0C842 121 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 C3orf79P0CE67 100 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 CRYGAP11844 174 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 S100A2P29034 98 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 FCER1GP30273 86 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 CXCL5P42830 114 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 RPL28P46779 137 aaKnown RBP2.28□□□□□ -2.04
USP54-217ENST00000498213 FP248Q71RG6 208 aaPredicted RBP2.28□□□□□ -2.04
USP54-217ENST00000498213 Q8N8P6 123 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 CHCHD1Q96BP2 118 aaKnown RBP2.28□□□□□ -2.04
USP54-217ENST00000498213 C12orf57Q99622 126 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 KRTAP4-1Q9BYQ7 146 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 MAP1LC3AQ9H492 121 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 LAMTOR2Q9Y2Q5 125 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 UBE2D4Q9Y2X8 147 aa2.28□□□□□ -2.04
USP54-217ENST00000498213 KRTDAPP60985 99 aa2.27□□□□□ -2.05
USP54-217ENST00000498213 SPAG11BQ08648 103 aa2.27□□□□□ -2.05
USP54-217ENST00000498213 JOSD1Q15040 202 aaPredicted RBP2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 155.6 ms