RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 NPC2P61916 151 aa8.9□□□□□ -0.98
HDAC3-213ENST00000492506 CIRBPQ14011 172 aaKnown RBP8.9□□□□□ -0.98
HDAC3-213ENST00000492506 LITAFQ99732 161 aa8.9□□□□□ -0.98
HDAC3-213ENST00000492506 JPT2Q9H910 190 aa8.9□□□□□ -0.98
HDAC3-213ENST00000492506 TRAV8-3A0A0A6YYJ7 113 aa8.89□□□□□ -0.99
HDAC3-213ENST00000492506 RNASE4P34096 147 aaKnown RBP8.89□□□□□ -0.99
HDAC3-213ENST00000492506 Q5XG85 94 aa8.89□□□□□ -0.99
HDAC3-213ENST00000492506 PYGO1Q9Y3Y4 419 aa8.89□□□□□ -0.99
HDAC3-213ENST00000492506 SERP1Q9Y6X1 66 aa8.89□□□□□ -0.99
HDAC3-213ENST00000492506 IGHV1-58A0A0C4DH39 117 aa8.88□□□□□ -0.99
HDAC3-213ENST00000492506 HAMPP81172 84 aa8.88□□□□□ -0.99
HDAC3-213ENST00000492506 Q6ZTI0 123 aa8.88□□□□□ -0.99
HDAC3-213ENST00000492506 PRAC2D3DTV9 90 aa8.87□□□□□ -0.99
HDAC3-213ENST00000492506 FAM229AH3BQW9 127 aa8.87□□□□□ -0.99
HDAC3-213ENST00000492506 DNAL4O96015 105 aa8.87□□□□□ -0.99
HDAC3-213ENST00000492506 DAZ2Q13117 558 aaKnown RBP8.87□□□□□ -0.99
HDAC3-213ENST00000492506 Q6ZSN1 163 aa8.87□□□□□ -0.99
HDAC3-213ENST00000492506 SMCR5Q8TEV8 140 aa8.87□□□□□ -0.99
HDAC3-213ENST00000492506 LRP1Q07954 4544 aaKnown RBP8.87□□□□□ -0.99
HDAC3-213ENST00000492506 J3QL48 77 aa8.86□□□□□ -0.99
HDAC3-213ENST00000492506 PRSS2P07478 247 aa8.86□□□□□ -0.99
HDAC3-213ENST00000492506 IGHV3-30-3P0DP02 117 aa8.86□□□□□ -0.99
HDAC3-213ENST00000492506 ATP5EP56381 51 aaPredicted RBP8.86□□□□□ -0.99
HDAC3-213ENST00000492506 CLEC2BQ92478 149 aa8.86□□□□□ -0.99
HDAC3-213ENST00000492506 NDUFA12Q9UI09 145 aa8.86□□□□□ -0.99
HDAC3-213ENST00000492506 KIF25-AS1Q9Y6Z4 181 aa8.86□□□□□ -0.99
HDAC3-213ENST00000492506 HRCT1Q6UXD1 115 aa8.85□□□□□ -0.99
HDAC3-213ENST00000492506 DAZ4Q86SG3 579 aaKnown RBP8.85□□□□□ -0.99
HDAC3-213ENST00000492506 DAZ3Q9NR90 486 aaKnown RBP8.85□□□□□ -0.99
HDAC3-213ENST00000492506 BAALC-AS2P0C853 105 aa8.84□□□□□ -0.99
HDAC3-213ENST00000492506 C20orf203Q8NBC4 194 aa8.84□□□□□ -0.99
HDAC3-213ENST00000492506 C11orf72Q8NBR9 251 aa8.84□□□□□ -0.99
HDAC3-213ENST00000492506 TRBV10-3A0A0K0K1G6 114 aa8.83□□□□□ -1
HDAC3-213ENST00000492506 FAM236DA0A1B0GTK5 79 aa8.83□□□□□ -1
HDAC3-213ENST00000492506 TINCRA0A1B0GVN0 87 aa8.83□□□□□ -1
HDAC3-213ENST00000492506 FAM236CP0DP71 79 aa8.83□□□□□ -1
HDAC3-213ENST00000492506 PFN2P35080 140 aa8.83□□□□□ -1
HDAC3-213ENST00000492506 SUMO4Q6EEV6 95 aa8.83□□□□□ -1
HDAC3-213ENST00000492506 C9orf85Q96MD7 179 aa8.83□□□□□ -1
HDAC3-213ENST00000492506 TRAV12-3A0A0B4J271 114 aa8.82□□□□□ -1
HDAC3-213ENST00000492506 KRTAP29-1A8MX34 341 aaPredicted RBP8.82□□□□□ -1
HDAC3-213ENST00000492506 NDUFA1O15239 70 aa8.82□□□□□ -1
HDAC3-213ENST00000492506 TIRAPP58753 221 aa8.82□□□□□ -1
HDAC3-213ENST00000492506 C4orf26Q17RF5 130 aa8.82□□□□□ -1
HDAC3-213ENST00000492506 LYPD5Q6UWN5 251 aa8.82□□□□□ -1
HDAC3-213ENST00000492506 ZFAND2AQ8N6M9 145 aa8.82□□□□□ -1
HDAC3-213ENST00000492506 FAT3Q8TDW7 4589 aa8.82□□□□□ -1
HDAC3-213ENST00000492506 IGLV4-3A0A075B6K6 122 aa8.81□□□□□ -1
HDAC3-213ENST00000492506 TRGV2A0A075B6R0 118 aa8.81□□□□□ -1
HDAC3-213ENST00000492506 SMIM26A0A096LP01 95 aa8.81□□□□□ -1
HDAC3-213ENST00000492506 USP17L23D6RBM5 183 aa8.81□□□□□ -1
HDAC3-213ENST00000492506 FAM19A4Q96LR4 140 aa8.81□□□□□ -1
HDAC3-213ENST00000492506 LINC00467Q9BRT7 94 aa8.81□□□□□ -1
HDAC3-213ENST00000492506 PAX4O43316 350 aa8.8□□□□□ -1
HDAC3-213ENST00000492506 RPL39P62891 51 aaKnown RBP8.8□□□□□ -1
HDAC3-213ENST00000492506 TRGV1A0A0A0MS02 117 aa8.79□□□□□ -1
HDAC3-213ENST00000492506 TRAV13-2A0A0B4J235 113 aa8.79□□□□□ -1
HDAC3-213ENST00000492506 LRCOL1A6NCL2 159 aa8.79□□□□□ -1
HDAC3-213ENST00000492506 DSCR8Q96T75 97 aa8.79□□□□□ -1
HDAC3-213ENST00000492506 FAM30AQ9NZY2 134 aa8.79□□□□□ -1
HDAC3-213ENST00000492506 A0A0J9YXV3 536 aa8.78□□□□□ -1
HDAC3-213ENST00000492506 H0YGX0 51 aa8.78□□□□□ -1
HDAC3-213ENST00000492506 RS1O15537 224 aa8.78□□□□□ -1
HDAC3-213ENST00000492506 NDUFC1O43677 76 aa8.78□□□□□ -1
HDAC3-213ENST00000492506 RNASE3P12724 160 aaKnown RBP8.78□□□□□ -1
HDAC3-213ENST00000492506 WFDC10BQ8IUB3 73 aa8.78□□□□□ -1
HDAC3-213ENST00000492506 OBSCN-AS1Q96MR7 158 aa8.78□□□□□ -1
HDAC3-213ENST00000492506 PRO0255Q9UI72 69 aa8.78□□□□□ -1
HDAC3-213ENST00000492506 IGLV5-52A0A0A0MRZ9 124 aa8.77□□□□□ -1.01
HDAC3-213ENST00000492506 FHL2Q14192 279 aa8.77□□□□□ -1.01
HDAC3-213ENST00000492506 V9GYY9 64 aa8.77□□□□□ -1.01
HDAC3-213ENST00000492506 KLLNB2CW77 178 aa8.76□□□□□ -1.01
HDAC3-213ENST00000492506 F5H697 171 aa8.76□□□□□ -1.01
HDAC3-213ENST00000492506 OXTP01178 125 aa8.76□□□□□ -1.01
HDAC3-213ENST00000492506 IGHV3-53P01767 116 aa8.76□□□□□ -1.01
HDAC3-213ENST00000492506 SERTAD4-AS1Q5TG53 156 aa8.76□□□□□ -1.01
HDAC3-213ENST00000492506 TMEM243Q9BU79 118 aa8.76□□□□□ -1.01
HDAC3-213ENST00000492506 UBE2D4Q9Y2X8 147 aa8.76□□□□□ -1.01
HDAC3-213ENST00000492506 IGLV5-45A0A087WSX0 123 aa8.75□□□□□ -1.01
HDAC3-213ENST00000492506 RPL28P46779 137 aaKnown RBP8.75□□□□□ -1.01
HDAC3-213ENST00000492506 PRR9Q5T870 116 aa8.75□□□□□ -1.01
HDAC3-213ENST00000492506 LINC00308Q8TCZ7 52 aa8.75□□□□□ -1.01
HDAC3-213ENST00000492506 C1orf43Q9BWL3 253 aa8.75□□□□□ -1.01
HDAC3-213ENST00000492506 LAMTOR3Q9UHA4 124 aa8.75□□□□□ -1.01
HDAC3-213ENST00000492506 M0QY20 66 aa8.74□□□□□ -1.01
HDAC3-213ENST00000492506 ADAMTSL4-AS1Q5T5F5 129 aa8.74□□□□□ -1.01
HDAC3-213ENST00000492506 PKHD1L1Q86WI1 4243 aa8.74□□□□□ -1.01
HDAC3-213ENST00000492506 K7EQD1 137 aa8.73□□□□□ -1.01
HDAC3-213ENST00000492506 PLA2G1BP04054 148 aaKnown RBP8.73□□□□□ -1.01
HDAC3-213ENST00000492506 Q6ZSA8 131 aa8.73□□□□□ -1.01
HDAC3-213ENST00000492506 Q8N814 137 aa8.73□□□□□ -1.01
HDAC3-213ENST00000492506 DEFB104AQ8WTQ1 72 aa8.73□□□□□ -1.01
HDAC3-213ENST00000492506 TRAV7A0A075B6U4 112 aa8.72□□□□□ -1.01
HDAC3-213ENST00000492506 IGHV3-64A0A075B6Q5 118 aa8.71□□□□□ -1.02
HDAC3-213ENST00000492506 GHRHP01286 108 aa8.71□□□□□ -1.02
HDAC3-213ENST00000492506 SEC61GP60059 68 aa8.71□□□□□ -1.02
HDAC3-213ENST00000492506 PIK3CD-AS1Q5SR53 167 aa8.71□□□□□ -1.02
HDAC3-213ENST00000492506 LINC00528Q8N1L1 170 aa8.71□□□□□ -1.02
HDAC3-213ENST00000492506 JMJD7-PLA2G4BH0Y9G9 81 aa8.7□□□□□ -1.02
HDAC3-213ENST00000492506 CRPP02741 224 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms