RNA–Protein interactions for RNA: ENST00000491967.1

SMARCB1-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 605 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-207ENST00000491967 HIST1H2BJP06899 126 aa4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 HIST1H2BOP23527 126 aa4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 HIST1H2BBP33778 126 aa4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 NDUFA6P56556 154 aa4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 HIST1H2BDP58876 126 aa4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 HIST1H2BCP62807 126 aa4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 HIST2H2BEQ16778 126 aa4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 SFTA2Q6UW10 78 aa4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 NKAPP1Q8N9T2 125 aa4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 TYMSOSQ8TAI1 123 aa4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 HIST1H2BHQ93079 126 aa4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 HIST1H2BNQ99877 126 aa4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 HIST1H2BMQ99879 126 aa4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 ANAPC11Q9NYG5 84 aa4.88□□□□□ -1.63
SMARCB1-207ENST00000491967 C11orf86A6NJI1 115 aa4.87□□□□□ -1.63
SMARCB1-207ENST00000491967 M0R378 163 aa4.87□□□□□ -1.63
SMARCB1-207ENST00000491967 SERF1AO75920 110 aa4.87□□□□□ -1.63
SMARCB1-207ENST00000491967 PFN2P35080 140 aa4.87□□□□□ -1.63
SMARCB1-207ENST00000491967 FAM19A2Q8N3H0 131 aa4.87□□□□□ -1.63
SMARCB1-207ENST00000491967 CHCHD1Q96BP2 118 aaKnown RBP4.87□□□□□ -1.63
SMARCB1-207ENST00000491967 IGKV2-28A0A075B6P5 120 aa4.86□□□□□ -1.63
SMARCB1-207ENST00000491967 HSBP1O75506 76 aa4.86□□□□□ -1.63
SMARCB1-207ENST00000491967 TSPAN13O95857 204 aa4.86□□□□□ -1.63
SMARCB1-207ENST00000491967 IGKV2D-28P01615 120 aa4.86□□□□□ -1.63
SMARCB1-207ENST00000491967 UBE2AP49459 152 aa4.86□□□□□ -1.63
SMARCB1-207ENST00000491967 RPL24P83731 157 aaKnown RBP4.86□□□□□ -1.63
SMARCB1-207ENST00000491967 PLEKHB2Q96CS7 222 aa4.86□□□□□ -1.63
SMARCB1-207ENST00000491967 TMEM126AQ9H061 195 aa4.86□□□□□ -1.63
SMARCB1-207ENST00000491967 TRAV12-1A0A0B4J245 112 aa4.85□□□□□ -1.63
SMARCB1-207ENST00000491967 TMEM223A0PJW6 202 aa4.85□□□□□ -1.63
SMARCB1-207ENST00000491967 TMEM238C9JI98 176 aa4.85□□□□□ -1.63
SMARCB1-207ENST00000491967 LINC00310P59036 64 aa4.85□□□□□ -1.63
SMARCB1-207ENST00000491967 PRLHP81277 87 aa4.84□□□□□ -1.63
SMARCB1-207ENST00000491967 TMEM170BQ5T4T1 132 aa4.84□□□□□ -1.63
SMARCB1-207ENST00000491967 LINC00304Q8N9R0 145 aa4.84□□□□□ -1.63
SMARCB1-207ENST00000491967 FAT4Q6V0I7 4981 aa4.83□□□□□ -1.64
SMARCB1-207ENST00000491967 FABP4P15090 132 aa4.83□□□□□ -1.64
SMARCB1-207ENST00000491967 CHTOPQ9Y3Y2 248 aaKnown RBP4.83□□□□□ -1.64
SMARCB1-207ENST00000491967 LOC107984156A0A0G2JMH3 177 aa4.82□□□□□ -1.64
SMARCB1-207ENST00000491967 KRTAP4-16G5E9R7 235 aaPredicted RBP4.82□□□□□ -1.64
SMARCB1-207ENST00000491967 S100A6P06703 90 aa4.82□□□□□ -1.64
SMARCB1-207ENST00000491967 SPRR1AP35321 89 aa4.82□□□□□ -1.64
SMARCB1-207ENST00000491967 TPRXLQ17RH7 258 aa4.82□□□□□ -1.64
SMARCB1-207ENST00000491967 FAM19A1Q7Z5A9 133 aa4.82□□□□□ -1.64
SMARCB1-207ENST00000491967 ARL17AQ8IVW1 177 aa4.82□□□□□ -1.64
SMARCB1-207ENST00000491967 IFI27L1Q96BM0 104 aa4.82□□□□□ -1.64
SMARCB1-207ENST00000491967 IGKV2D-26A0A0A0MRZ7 120 aa4.81□□□□□ -1.64
SMARCB1-207ENST00000491967 H0Y8G0 127 aa4.81□□□□□ -1.64
SMARCB1-207ENST00000491967 LEPROTL1O95214 131 aa4.81□□□□□ -1.64
SMARCB1-207ENST00000491967 LINC00158P58513 81 aa4.81□□□□□ -1.64
SMARCB1-207ENST00000491967 COA6Q5JTJ3 125 aaKnown RBP4.81□□□□□ -1.64
SMARCB1-207ENST00000491967 LCE2AQ5TA79 106 aaPredicted RBP4.81□□□□□ -1.64
SMARCB1-207ENST00000491967 KCNQ1DNQ9H478 68 aa4.81□□□□□ -1.64
SMARCB1-207ENST00000491967 TMA7Q9Y2S6 64 aaKnown RBP4.81□□□□□ -1.64
SMARCB1-207ENST00000491967 SNRPEP62304 92 aaKnown RBP4.8□□□□□ -1.64
SMARCB1-207ENST00000491967 HERV-K104P63124 156 aa4.8□□□□□ -1.64
SMARCB1-207ENST00000491967 LINC00337Q8N6G1 96 aa4.8□□□□□ -1.64
SMARCB1-207ENST00000491967 SPRR4Q96PI1 79 aa4.8□□□□□ -1.64
SMARCB1-207ENST00000491967 HSPB8Q9UJY1 196 aa4.8□□□□□ -1.64
SMARCB1-207ENST00000491967 IGLV7-46A0A075B6I9 117 aa4.79□□□□□ -1.64
SMARCB1-207ENST00000491967 PRYO14603 147 aa4.79□□□□□ -1.64
SMARCB1-207ENST00000491967 SMIM13P0DJ93 91 aa4.79□□□□□ -1.64
SMARCB1-207ENST00000491967 S100A2P29034 98 aa4.79□□□□□ -1.64
SMARCB1-207ENST00000491967 SPAG11AQ6PDA7 123 aa4.79□□□□□ -1.64
SMARCB1-207ENST00000491967 C3orf22Q8N5N4 141 aa4.79□□□□□ -1.64
SMARCB1-207ENST00000491967 RETNLBQ9BQ08 111 aa4.79□□□□□ -1.64
SMARCB1-207ENST00000491967 A0A0U1RQV1 116 aa4.78□□□□□ -1.64
SMARCB1-207ENST00000491967 LINC00587B1AMM8 73 aa4.78□□□□□ -1.64
SMARCB1-207ENST00000491967 LINC00483Q53H64 154 aa4.78□□□□□ -1.64
SMARCB1-207ENST00000491967 HIST3H2BBQ8N257 126 aa4.78□□□□□ -1.64
SMARCB1-207ENST00000491967 MIR7-3HGQ8N6C7 128 aa4.78□□□□□ -1.64
SMARCB1-207ENST00000491967 HIGD2AQ9BW72 106 aa4.78□□□□□ -1.64
SMARCB1-207ENST00000491967 MAP1LC3CQ9BXW4 147 aa4.78□□□□□ -1.64
SMARCB1-207ENST00000491967 A0A0U1RRA0 63 aa4.77□□□□□ -1.65
SMARCB1-207ENST00000491967 C5orf52A6NGY3 159 aa4.77□□□□□ -1.65
SMARCB1-207ENST00000491967 KRTDAPP60985 99 aa4.77□□□□□ -1.65
SMARCB1-207ENST00000491967 BOD1L2Q8IYS8 172 aa4.77□□□□□ -1.65
SMARCB1-207ENST00000491967 NDUFA12Q9UI09 145 aa4.77□□□□□ -1.65
SMARCB1-207ENST00000491967 ZNF706Q9Y5V0 76 aaPredicted RBP4.77□□□□□ -1.65
SMARCB1-207ENST00000491967 TRBV10-3A0A0K0K1G6 114 aa4.76□□□□□ -1.65
SMARCB1-207ENST00000491967 TRBV10-2A0A0K0K1G8 114 aa4.76□□□□□ -1.65
SMARCB1-207ENST00000491967 MYMXA0A1B0GTQ4 84 aa4.76□□□□□ -1.65
SMARCB1-207ENST00000491967 TSPEAR-AS2P59090 65 aa4.76□□□□□ -1.65
SMARCB1-207ENST00000491967 FP248Q71RG6 208 aaPredicted RBP4.76□□□□□ -1.65
SMARCB1-207ENST00000491967 SMCR5Q8TEV8 140 aa4.76□□□□□ -1.65
SMARCB1-207ENST00000491967 HIST1H2BLQ99880 126 aa4.76□□□□□ -1.65
SMARCB1-207ENST00000491967 PMCHL2Q9BQD1 86 aa4.76□□□□□ -1.65
SMARCB1-207ENST00000491967 SYS1-DBNDD2H3BUS1 97 aa4.75□□□□□ -1.65
SMARCB1-207ENST00000491967 LEPROTO15243 131 aa4.75□□□□□ -1.65
SMARCB1-207ENST00000491967 C3orf79P0CE67 100 aa4.75□□□□□ -1.65
SMARCB1-207ENST00000491967 CDIP1Q9H305 208 aa4.75□□□□□ -1.65
SMARCB1-207ENST00000491967 PPDPFQ9H3Y8 114 aa4.75□□□□□ -1.65
SMARCB1-207ENST00000491967 MUC17Q685J3 4493 aa4.75□□□□□ -1.65
SMARCB1-207ENST00000491967 LOC100996750A0A140TA64 210 aa4.74□□□□□ -1.65
SMARCB1-207ENST00000491967 B5MCH6 92 aa4.74□□□□□ -1.65
SMARCB1-207ENST00000491967 NCR3O14931 201 aa4.74□□□□□ -1.65
SMARCB1-207ENST00000491967 SPINK1P00995 79 aa4.74□□□□□ -1.65
SMARCB1-207ENST00000491967 PLNP26678 52 aa4.74□□□□□ -1.65
SMARCB1-207ENST00000491967 KRTAP13-3Q3SY46 172 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms