RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 PIGBOS1A0A0B4J2F0 54 aa-0.54□□□□□ -2.5
SCN1A-206ENST00000491429 SPAARA0A1B0GVQ0 90 aa-0.54□□□□□ -2.5
SCN1A-206ENST00000491429 MT1XP80297 61 aa-0.54□□□□□ -2.5
SCN1A-206ENST00000491429 TMEM170BQ5T4T1 132 aa-0.54□□□□□ -2.5
SCN1A-206ENST00000491429 DEFB104AQ8WTQ1 72 aa-0.54□□□□□ -2.5
SCN1A-206ENST00000491429 LENEPQ9Y5L5 61 aa-0.54□□□□□ -2.5
SCN1A-206ENST00000491429 CC2D2AQ9P2K1 1620 aa-0.54□□□□□ -2.5
SCN1A-206ENST00000491429 TROQ12816 1431 aaPredicted RBP-0.55□□□□□ -2.5
SCN1A-206ENST00000491429 PPIP5K1Q6PFW1 1433 aa-0.55□□□□□ -2.5
SCN1A-206ENST00000491429 NSD3Q9BZ95 1437 aa-0.55□□□□□ -2.5
SCN1A-206ENST00000491429 NWD2Q9ULI1 1742 aa-0.55□□□□□ -2.5
SCN1A-206ENST00000491429 C5P01031 1676 aa-0.55□□□□□ -2.5
SCN1A-206ENST00000491429 TOP2BQ02880 1626 aa-0.55□□□□□ -2.5
SCN1A-206ENST00000491429 ARPC4P59998 168 aa-0.55□□□□□ -2.5
SCN1A-206ENST00000491429 DEFA5Q01523 94 aa-0.55□□□□□ -2.5
SCN1A-206ENST00000491429 DEFB112Q30KQ8 113 aa-0.55□□□□□ -2.5
SCN1A-206ENST00000491429 EIF4G3O43432 1585 aaKnown RBP-0.55□□□□□ -2.5
SCN1A-206ENST00000491429 DNMBPQ6XZF7 1577 aa-0.55□□□□□ -2.5
SCN1A-206ENST00000491429 LRRC37AA6NMS7 1700 aa-0.55□□□□□ -2.5
SCN1A-206ENST00000491429 QSER1Q2KHR3 1735 aa-0.55□□□□□ -2.5
SCN1A-206ENST00000491429 PKD1L3Q7Z443 1732 aa-0.55□□□□□ -2.5
SCN1A-206ENST00000491429 CFAP43Q8NDM7 1665 aa-0.56□□□□□ -2.5
SCN1A-206ENST00000491429 MAST1Q9Y2H9 1570 aa-0.56□□□□□ -2.5
SCN1A-206ENST00000491429 Q8N8P6 123 aa-0.56□□□□□ -2.5
SCN1A-206ENST00000491429 LCN9Q8WX39 176 aa-0.56□□□□□ -2.5
SCN1A-206ENST00000491429 LSM10Q969L4 123 aaKnown RBP-0.56□□□□□ -2.5
SCN1A-206ENST00000491429 MAPKBP1O60336 1514 aa-0.56□□□□□ -2.5
SCN1A-206ENST00000491429 LTN1O94822 1766 aa-0.56□□□□□ -2.5
SCN1A-206ENST00000491429 TEX14Q8IWB6 1497 aa-0.56□□□□□ -2.5
SCN1A-206ENST00000491429 ITSN2Q9NZM3 1697 aa-0.56□□□□□ -2.5
SCN1A-206ENST00000491429 MYOM3Q5VTT5 1437 aa-0.56□□□□□ -2.5
SCN1A-206ENST00000491429 TARBP1Q13395 1621 aaKnown RBP-0.56□□□□□ -2.5
SCN1A-206ENST00000491429 SHROOM2Q13796 1616 aa-0.56□□□□□ -2.5
SCN1A-206ENST00000491429 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.56□□□□□ -2.5
SCN1A-206ENST00000491429 ARHGEF5Q12774 1597 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 SCN11AQ9UI33 1791 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 TOGARAM1Q9Y4F4 1720 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 TRBV6-1A0A0K0K1D8 114 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 LINC00959A0A1B0GUT2 108 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 SPINK4O60575 86 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 COX17Q14061 63 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 H1FX-AS1Q4G0G2 97 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 Q6JHZ5 121 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 COPS9Q8WXC6 57 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 MT1LQ93083 61 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 NRXN1Q9ULB1 1477 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 NCOA3Q9Y6Q9 1424 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 ABCA6Q8N139 1617 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 SBF2Q86WG5 1849 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 WNK3Q9BYP7 1800 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 SPEF2Q9C093 1822 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 DIP2AQ14689 1571 aa-0.57□□□□□ -2.5
SCN1A-206ENST00000491429 NUP188Q5SRE5 1749 aa-0.58□□□□□ -2.5
SCN1A-206ENST00000491429 CUX1P39880 1505 aa-0.58□□□□□ -2.5
SCN1A-206ENST00000491429 FAM135AQ9P2D6 1515 aa-0.58□□□□□ -2.5
SCN1A-206ENST00000491429 ROBO1Q9Y6N7 1651 aa-0.58□□□□□ -2.5
SCN1A-206ENST00000491429 TNFP01375 233 aa-0.58□□□□□ -2.5
SCN1A-206ENST00000491429 PIGYQ3MUY2 71 aa-0.58□□□□□ -2.5
SCN1A-206ENST00000491429 C12orf73Q69YU5 71 aa-0.58□□□□□ -2.5
SCN1A-206ENST00000491429 COX6B2Q6YFQ2 88 aa-0.58□□□□□ -2.5
SCN1A-206ENST00000491429 AMELXQ99217 191 aa-0.58□□□□□ -2.5
SCN1A-206ENST00000491429 LINC00474Q9P2X8 69 aa-0.58□□□□□ -2.5
SCN1A-206ENST00000491429 KIF14Q15058 1648 aa-0.58□□□□□ -2.5
SCN1A-206ENST00000491429 NFAT5O94916 1531 aa-0.59□□□□□ -2.5
SCN1A-206ENST00000491429 KIF21AQ7Z4S6 1674 aa-0.59□□□□□ -2.5
SCN1A-206ENST00000491429 BTAF1O14981 1849 aa-0.59□□□□□ -2.5
SCN1A-206ENST00000491429 GRIN2AQ12879 1464 aa-0.59□□□□□ -2.5
SCN1A-206ENST00000491429 MYO7BQ6PIF6 2116 aa-0.59□□□□□ -2.5
SCN1A-206ENST00000491429 BAGE2Q86Y30 109 aa-0.59□□□□□ -2.5
SCN1A-206ENST00000491429 TSLPQ969D9 159 aa-0.59□□□□□ -2.5
SCN1A-206ENST00000491429 SERP1Q9Y6X1 66 aa-0.59□□□□□ -2.5
SCN1A-206ENST00000491429 CDC42BPGQ6DT37 1551 aa-0.59□□□□□ -2.5
SCN1A-206ENST00000491429 THOC2Q8NI27 1593 aaKnown RBP-0.59□□□□□ -2.5
SCN1A-206ENST00000491429 XRN1Q8IZH2 1706 aaKnown RBP-0.59□□□□□ -2.5
SCN1A-206ENST00000491429 CROCC2H7BZ55 1655 aa-0.59□□□□□ -2.5
SCN1A-206ENST00000491429 RALGAPBQ86X10 1494 aa-0.6□□□□□ -2.5
SCN1A-206ENST00000491429 MAGI1Q96QZ7 1491 aaPredicted RBP-0.6□□□□□ -2.5
SCN1A-206ENST00000491429 SUPT6HQ7KZ85 1726 aaKnown RBP-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 EEA1Q15075 1411 aa-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 FAM25AB3EWG3 89 aa-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 FAM25CB3EWG5 89 aa-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 FAM25GB3EWG6 89 aa-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 F8VRH5 84 aa-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 DEFB135Q30KP9 77 aa-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 DEFB105AQ8NG35 78 aa-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 SPRR4Q96PI1 79 aa-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 FXYD6Q9H0Q3 95 aa-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 NDUFA4L2Q9NRX3 87 aa-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 APLNQ9ULZ1 77 aa-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 NHSQ6T4R5 1651 aa-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 PREX1Q8TCU6 1659 aa-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 PRDM15P57071 1507 aaPredicted RBP-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 MAGI3Q5TCQ9 1506 aa-0.6□□□□□ -2.51
SCN1A-206ENST00000491429 CFTRP13569 1480 aa-0.61□□□□□ -2.51
SCN1A-206ENST00000491429 RGPD1P0DJD0 1748 aa-0.61□□□□□ -2.51
SCN1A-206ENST00000491429 SPHKAPQ2M3C7 1700 aa-0.61□□□□□ -2.51
SCN1A-206ENST00000491429 TIAM1Q13009 1591 aa-0.61□□□□□ -2.51
SCN1A-206ENST00000491429 UQCR11O14957 56 aa-0.61□□□□□ -2.51
SCN1A-206ENST00000491429 COX6B1P14854 86 aa-0.61□□□□□ -2.51
SCN1A-206ENST00000491429 Q6AWC8 147 aa-0.61□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms