RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 PAPPA2Q9BXP8 1791 aa-0.22□□□□□ -2.44
PTPN4-212ENST00000488896 NKTRP30414 1462 aaKnown RBP-0.22□□□□□ -2.44
PTPN4-212ENST00000488896 MRC2Q9UBG0 1479 aa-0.22□□□□□ -2.44
PTPN4-212ENST00000488896 NRXN1Q9ULB1 1477 aa-0.22□□□□□ -2.44
PTPN4-212ENST00000488896 KIF20BQ96Q89 1820 aa-0.22□□□□□ -2.44
PTPN4-212ENST00000488896 PRDM15P57071 1507 aaPredicted RBP-0.22□□□□□ -2.44
PTPN4-212ENST00000488896 FLNBO75369 2602 aaKnown RBP-0.22□□□□□ -2.44
PTPN4-212ENST00000488896 FLNAP21333 2647 aaKnown RBP-0.22□□□□□ -2.44
PTPN4-212ENST00000488896 ATRQ13535 2644 aa-0.22□□□□□ -2.44
PTPN4-212ENST00000488896 DIP2CQ9Y2E4 1556 aa-0.22□□□□□ -2.44
PTPN4-212ENST00000488896 IQCF6A8MYZ5 107 aa-0.22□□□□□ -2.44
PTPN4-212ENST00000488896 PKIAP61925 76 aa-0.22□□□□□ -2.44
PTPN4-212ENST00000488896 NCOA3Q9Y6Q9 1424 aa-0.22□□□□□ -2.45
PTPN4-212ENST00000488896 PCNX1Q96RV3 2341 aa-0.22□□□□□ -2.45
PTPN4-212ENST00000488896 MYH4Q9Y623 1939 aa-0.23□□□□□ -2.45
PTPN4-212ENST00000488896 CHD1O14646 1710 aa-0.23□□□□□ -2.45
PTPN4-212ENST00000488896 CYB5AP00167 134 aa-0.23□□□□□ -2.45
PTPN4-212ENST00000488896 GYPAP02724 150 aa-0.23□□□□□ -2.45
PTPN4-212ENST00000488896 COX7BP24311 80 aa-0.23□□□□□ -2.45
PTPN4-212ENST00000488896 RPL38P63173 70 aaKnown RBP-0.23□□□□□ -2.45
PTPN4-212ENST00000488896 PLGLAQ15195 96 aa-0.23□□□□□ -2.45
PTPN4-212ENST00000488896 C20orf78Q9BR46 151 aa-0.23□□□□□ -2.45
PTPN4-212ENST00000488896 SNHG12Q9BXW3 62 aa-0.23□□□□□ -2.45
PTPN4-212ENST00000488896 EDC4Q6P2E9 1401 aaKnown RBP-0.23□□□□□ -2.45
PTPN4-212ENST00000488896 SLIT1O75093 1534 aa-0.23□□□□□ -2.45
PTPN4-212ENST00000488896 ABCC2Q92887 1545 aa-0.23□□□□□ -2.45
PTPN4-212ENST00000488896 KNL1Q8NG31 2342 aa-0.24□□□□□ -2.45
PTPN4-212ENST00000488896 HSPG2P98160 4391 aa-0.24□□□□□ -2.45
PTPN4-212ENST00000488896 MON2Q7Z3U7 1717 aa-0.24□□□□□ -2.45
PTPN4-212ENST00000488896 COL14A1Q05707 1796 aaKnown RBP-0.24□□□□□ -2.45
PTPN4-212ENST00000488896 CSMD3Q7Z407 3707 aa-0.24□□□□□ -2.45
PTPN4-212ENST00000488896 A0A1B0GUT8 65 aa-0.24□□□□□ -2.45
PTPN4-212ENST00000488896 NDUFA3O95167 84 aa-0.24□□□□□ -2.45
PTPN4-212ENST00000488896 S100A8P05109 93 aa-0.24□□□□□ -2.45
PTPN4-212ENST00000488896 HMGN2P05204 90 aaKnown RBP-0.24□□□□□ -2.45
PTPN4-212ENST00000488896 WFDC9Q8NEX5 89 aa-0.24□□□□□ -2.45
PTPN4-212ENST00000488896 TEX14Q8IWB6 1497 aa-0.24□□□□□ -2.45
PTPN4-212ENST00000488896 TOPAZ1Q8N9V7 1692 aa-0.24□□□□□ -2.45
PTPN4-212ENST00000488896 UBE2D4Q9Y2X8 147 aa-0.25□□□□□ -2.45
PTPN4-212ENST00000488896 FYCO1Q9BQS8 1478 aa-0.25□□□□□ -2.45
PTPN4-212ENST00000488896 ZANQ9Y493 2812 aa-0.25□□□□□ -2.45
PTPN4-212ENST00000488896 LRRC37AA6NMS7 1700 aa-0.27□□□□□ -2.45
PTPN4-212ENST00000488896 TARBP1Q13395 1621 aaKnown RBP-0.27□□□□□ -2.45
PTPN4-212ENST00000488896 PDE4DIPQ5VU43 2346 aa-0.27□□□□□ -2.45
PTPN4-212ENST00000488896 TRAV21A0A0B4J279 112 aa-0.27□□□□□ -2.45
PTPN4-212ENST00000488896 S100A16Q96FQ6 103 aaKnown RBP-0.27□□□□□ -2.45
PTPN4-212ENST00000488896 C5P01031 1676 aa-0.27□□□□□ -2.45
PTPN4-212ENST00000488896 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.27□□□□□ -2.454e-9■■■■■ 34.1
PTPN4-212ENST00000488896 DCHS2Q6V1P9 2916 aa-0.27□□□□□ -2.45
PTPN4-212ENST00000488896 SAMD9Q5K651 1589 aa-0.28□□□□□ -2.45
PTPN4-212ENST00000488896 SRRM2Q9UQ35 2752 aaKnown RBP-0.28□□□□□ -2.45
PTPN4-212ENST00000488896 ABCC10Q5T3U5 1492 aa-0.28□□□□□ -2.45
PTPN4-212ENST00000488896 MYMXA0A1B0GTQ4 84 aa-0.28□□□□□ -2.45
PTPN4-212ENST00000488896 PYY3Q5JQD4 70 aa-0.28□□□□□ -2.45
PTPN4-212ENST00000488896 SHPRHQ149N8 1683 aa-0.28□□□□□ -2.45
PTPN4-212ENST00000488896 CUX1P39880 1505 aa-0.28□□□□□ -2.45
PTPN4-212ENST00000488896 NBASA2RRP1 2371 aa-0.28□□□□□ -2.45
PTPN4-212ENST00000488896 DEFA5Q01523 94 aa-0.29□□□□□ -2.46
PTPN4-212ENST00000488896 KRTAP6-2Q3LI66 62 aa-0.29□□□□□ -2.46
PTPN4-212ENST00000488896 BCORQ6W2J9 1755 aa-0.29□□□□□ -2.46
PTPN4-212ENST00000488896 CRYBG1Q9Y4K1 1723 aa-0.3□□□□□ -2.46
PTPN4-212ENST00000488896 TNXBP22105 4242 aa-0.3□□□□□ -2.46
PTPN4-212ENST00000488896 CLTCQ00610 1675 aaKnown RBP-0.3□□□□□ -2.46
PTPN4-212ENST00000488896 CEBPZOSA8MTT3 80 aa-0.3□□□□□ -2.46
PTPN4-212ENST00000488896 ACYP1P07311 99 aa-0.3□□□□□ -2.46
PTPN4-212ENST00000488896 LRP2P98164 4655 aa-0.3□□□□□ -2.46
PTPN4-212ENST00000488896 KRTAP19-8Q3LI54 63 aa-0.3□□□□□ -2.46
PTPN4-212ENST00000488896 PRO3102Q9H379 93 aa-0.3□□□□□ -2.46
PTPN4-212ENST00000488896 V9GYS6 101 aa-0.3□□□□□ -2.46
PTPN4-212ENST00000488896 RGPD2P0DJD1 1756 aa-0.3□□□□□ -2.46
PTPN4-212ENST00000488896 ATP10BO94823 1461 aa-0.3□□□□□ -2.46
PTPN4-212ENST00000488896 SETXQ7Z333 2677 aaKnown RBP-0.31□□□□□ -2.46
PTPN4-212ENST00000488896 MYCBP2O75592 4640 aa-0.31□□□□□ -2.46
PTPN4-212ENST00000488896 H3BNG1 76 aa-0.31□□□□□ -2.46
PTPN4-212ENST00000488896 LINC00158P58513 81 aa-0.31□□□□□ -2.46
PTPN4-212ENST00000488896 SNRPFP62306 86 aaKnown RBP-0.31□□□□□ -2.46
PTPN4-212ENST00000488896 KMT2AQ03164 3969 aa-0.31□□□□□ -2.46
PTPN4-212ENST00000488896 MAGI2Q86UL8 1455 aa-0.31□□□□□ -2.46
PTPN4-212ENST00000488896 CCNB3Q8WWL7 1395 aa-0.32□□□□□ -2.46
PTPN4-212ENST00000488896 NEXMIFQ5QGS0 1516 aa-0.32□□□□□ -2.46
PTPN4-212ENST00000488896 C3orf79P0CE67 100 aa-0.32□□□□□ -2.46
PTPN4-212ENST00000488896 SPRR2AP35326 72 aa-0.32□□□□□ -2.46
PTPN4-212ENST00000488896 COX6B2Q6YFQ2 88 aa-0.32□□□□□ -2.46
PTPN4-212ENST00000488896 LINC00643Q86TS7 51 aa-0.32□□□□□ -2.46
PTPN4-212ENST00000488896 LPAP08519 4548 aa-0.32□□□□□ -2.46
PTPN4-212ENST00000488896 BSNQ9UPA5 3926 aa-0.32□□□□□ -2.46
PTPN4-212ENST00000488896 PKD1L3Q7Z443 1732 aa-0.33□□□□□ -2.46
PTPN4-212ENST00000488896 LRRC7Q96NW7 1537 aa-0.33□□□□□ -2.46
PTPN4-212ENST00000488896 K7EP34 96 aa-0.33□□□□□ -2.46
PTPN4-212ENST00000488896 IFI27P40305 119 aaPredicted RBP-0.33□□□□□ -2.46
PTPN4-212ENST00000488896 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.33□□□□□ -2.46
PTPN4-212ENST00000488896 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.33□□□□□ -2.46
PTPN4-212ENST00000488896 SPG11Q96JI7 2443 aa-0.34□□□□□ -2.46
PTPN4-212ENST00000488896 LRRC9Q6ZRR7 1453 aa-0.34□□□□□ -2.46
PTPN4-212ENST00000488896 KANTRA0A1W2PQU2 76 aa-0.34□□□□□ -2.46
PTPN4-212ENST00000488896 NDUFB1O75438 58 aa-0.34□□□□□ -2.46
PTPN4-212ENST00000488896 PEG3Q9GZU2 1588 aa-0.34□□□□□ -2.46
PTPN4-212ENST00000488896 KIAA1551Q9HCM1 1747 aa-0.34□□□□□ -2.46
PTPN4-212ENST00000488896 EPRSP07814 1512 aaKnown RBP-0.34□□□□□ -2.46
PTPN4-212ENST00000488896 PLIN4Q96Q06 1357 aa-0.34□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms