RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 Q1RN00 199 aa9.33□□□□□ -0.92
CUX1-209ENST00000487284 Q6ZRU5 148 aa9.33□□□□□ -0.92
CUX1-209ENST00000487284 USP17L23D6RBM5 183 aa9.32□□□□□ -0.92
CUX1-209ENST00000487284 TRAV13-2A0A0B4J235 113 aa9.31□□□□□ -0.92
CUX1-209ENST00000487284 NDUFC2O95298 119 aa9.31□□□□□ -0.92
CUX1-209ENST00000487284 PSMB2P49721 201 aa9.31□□□□□ -0.92
CUX1-209ENST00000487284 TRIAP1O43715 76 aa9.3□□□□□ -0.92
CUX1-209ENST00000487284 LINC00337Q8N6G1 96 aa9.3□□□□□ -0.92
CUX1-209ENST00000487284 DNAH17Q9UFH2 4485 aa9.3□□□□□ -0.92
CUX1-209ENST00000487284 SYCNQ0VAF6 134 aa9.29□□□□□ -0.92
CUX1-209ENST00000487284 Q6ZRN7 208 aaPredicted RBP9.29□□□□□ -0.92
CUX1-209ENST00000487284 TRBV20-1A0A075B6N2 111 aa9.29□□□□□ -0.92
CUX1-209ENST00000487284 PSCAO43653 123 aa9.28□□□□□ -0.92
CUX1-209ENST00000487284 TCL1BO95988 128 aa9.28□□□□□ -0.92
CUX1-209ENST00000487284 C1orf134Q5TEV5 83 aa9.28□□□□□ -0.92
CUX1-209ENST00000487284 H3BMG7 143 aa9.27□□□□□ -0.93
CUX1-209ENST00000487284 SCGB1C2P0DMR2 95 aa9.27□□□□□ -0.93
CUX1-209ENST00000487284 RNF151Q2KHN1 245 aa9.27□□□□□ -0.93
CUX1-209ENST00000487284 RYR2Q92736 4967 aa9.27□□□□□ -0.93
CUX1-209ENST00000487284 NDUFC2-KCTD14E9PQ53 114 aa9.26□□□□□ -0.93
CUX1-209ENST00000487284 Q8NDZ9 215 aa9.26□□□□□ -0.93
CUX1-209ENST00000487284 CARD19Q96LW7 228 aa9.26□□□□□ -0.93
CUX1-209ENST00000487284 LECT2O14960 151 aa9.25□□□□□ -0.93
CUX1-209ENST00000487284 SLPIP03973 132 aa9.25□□□□□ -0.93
CUX1-209ENST00000487284 COX6CP09669 75 aa9.25□□□□□ -0.93
CUX1-209ENST00000487284 FRAS1Q86XX4 4008 aa9.25□□□□□ -0.93
CUX1-209ENST00000487284 RPL28P46779 137 aaKnown RBP9.24□□□□□ -0.93
CUX1-209ENST00000487284 WFDC2Q14508 124 aa9.24□□□□□ -0.93
CUX1-209ENST00000487284 RYR3Q15413 4870 aa9.24□□□□□ -0.93
CUX1-209ENST00000487284 TLX1NBP0CAT3 122 aa9.24□□□□□ -0.93
CUX1-209ENST00000487284 PRR3P79522 188 aaKnown RBP9.23□□□□□ -0.93
CUX1-209ENST00000487284 XAGE1AQ9HD64 81 aa9.23□□□□□ -0.93
CUX1-209ENST00000487284 RTL8CO15255 209 aa9.22□□□□□ -0.93
CUX1-209ENST00000487284 SMIM11BQ8TCY0 68 aa9.22□□□□□ -0.93
CUX1-209ENST00000487284 PRO0461Q9UI25 63 aa9.22□□□□□ -0.93
CUX1-209ENST00000487284 FAT2Q9NYQ8 4349 aa9.22□□□□□ -0.93
CUX1-209ENST00000487284 TRBV10-2A0A0K0K1G8 114 aa9.21□□□□□ -0.93
CUX1-209ENST00000487284 LRCOL1A6NCL2 159 aa9.21□□□□□ -0.93
CUX1-209ENST00000487284 F8W1H4 67 aa9.21□□□□□ -0.93
CUX1-209ENST00000487284 ATXN8Q156A1 80 aa9.21□□□□□ -0.93
CUX1-209ENST00000487284 Q6ZRP5 223 aa9.21□□□□□ -0.93
CUX1-209ENST00000487284 OR13C6PQ8NH95 151 aa9.21□□□□□ -0.93
CUX1-209ENST00000487284 NCR3O14931 201 aa9.2□□□□□ -0.94
CUX1-209ENST00000487284 CLEC2BQ92478 149 aa9.2□□□□□ -0.94
CUX1-209ENST00000487284 LST1O00453 97 aa9.2□□□□□ -0.94
CUX1-209ENST00000487284 TMEM126AQ9H061 195 aa9.2□□□□□ -0.94
CUX1-209ENST00000487284 DNAH11Q96DT5 4516 aa9.19□□□□□ -0.94
CUX1-209ENST00000487284 VPREB1P12018 145 aa9.19□□□□□ -0.94
CUX1-209ENST00000487284 C14orf177Q52M58 125 aa9.19□□□□□ -0.94
CUX1-209ENST00000487284 A0A087WTM6 91 aa9.18□□□□□ -0.94
CUX1-209ENST00000487284 CNBPP62633 177 aaKnown RBP9.18□□□□□ -0.94
CUX1-209ENST00000487284 TNP2Q05952 138 aa9.18□□□□□ -0.94
CUX1-209ENST00000487284 LINC01620Q4KN68 170 aa9.18□□□□□ -0.94
CUX1-209ENST00000487284 GAGE2EQ4V326 116 aa9.18□□□□□ -0.94
CUX1-209ENST00000487284 GAGE2DQ9UEU5 116 aa9.18□□□□□ -0.94
CUX1-209ENST00000487284 SMCPP49901 116 aaPredicted RBP9.17□□□□□ -0.94
CUX1-209ENST00000487284 RPL18AQ02543 176 aaKnown RBP9.17□□□□□ -0.94
CUX1-209ENST00000487284 C9orf129Q5T035 196 aaKnown RBP9.17□□□□□ -0.94
CUX1-209ENST00000487284 MTURNQ8N3F0 131 aa9.17□□□□□ -0.94
CUX1-209ENST00000487284 IGLV6-57P01721 117 aa9.16□□□□□ -0.94
CUX1-209ENST00000487284 S100A7L2Q5SY68 101 aa9.16□□□□□ -0.94
CUX1-209ENST00000487284 C9JAW5 83 aa9.16□□□□□ -0.94
CUX1-209ENST00000487284 PKD1P98161 4303 aa9.15□□□□□ -0.94
CUX1-209ENST00000487284 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.15□□□□□ -0.95
CUX1-209ENST00000487284 LOC107984640A0A0U1RRK4 108 aa9.15□□□□□ -0.95
CUX1-209ENST00000487284 H0YGX0 51 aa9.15□□□□□ -0.95
CUX1-209ENST00000487284 Q8N814 137 aa9.15□□□□□ -0.95
CUX1-209ENST00000487284 PLA2G2DQ9UNK4 145 aa9.15□□□□□ -0.95
CUX1-209ENST00000487284 TRACP01848 142 aa9.14□□□□□ -0.95
CUX1-209ENST00000487284 LINC01600Q96MT4 127 aa9.14□□□□□ -0.95
CUX1-209ENST00000487284 M0QXV9 152 aa9.13□□□□□ -0.95
CUX1-209ENST00000487284 M0R378 163 aa9.13□□□□□ -0.95
CUX1-209ENST00000487284 SLC25A20O43772 301 aa9.13□□□□□ -0.95
CUX1-209ENST00000487284 FAM218AQ96MZ4 157 aa9.13□□□□□ -0.95
CUX1-209ENST00000487284 HECTD4Q9Y4D8 3996 aa9.13□□□□□ -0.95
CUX1-209ENST00000487284 TRBV10-3A0A0K0K1G6 114 aa9.12□□□□□ -0.95
CUX1-209ENST00000487284 DNAH5Q8TE73 4624 aa9.11□□□□□ -0.95
CUX1-209ENST00000487284 IGLV5-37A0A075B6J1 123 aa9.11□□□□□ -0.95
CUX1-209ENST00000487284 SERTAD4-AS1Q5TG53 156 aa9.11□□□□□ -0.95
CUX1-209ENST00000487284 H3BT86 120 aa9.1□□□□□ -0.95
CUX1-209ENST00000487284 GAGE2BQ13066 116 aa9.1□□□□□ -0.95
CUX1-209ENST00000487284 ETDBQ3ZM63 59 aa9.1□□□□□ -0.95
CUX1-209ENST00000487284 C6orf99Q4VX62 202 aa9.1□□□□□ -0.95
CUX1-209ENST00000487284 FUSP35637 526 aaKnown RBP eCLIP9.09□□□□□ -0.95
CUX1-209ENST00000487284 ANKRD29Q8N6D5 301 aa9.09□□□□□ -0.95
CUX1-209ENST00000487284 TRAV23DV6A0A075B6W5 121 aa9.08□□□□□ -0.96
CUX1-209ENST00000487284 A0A087WYN8 130 aa9.08□□□□□ -0.96
CUX1-209ENST00000487284 OCIAD2Q56VL3 154 aa9.08□□□□□ -0.96
CUX1-209ENST00000487284 LINC00336Q6ZUF6 198 aa9.08□□□□□ -0.96
CUX1-209ENST00000487284 NKAPP1Q8N9T2 125 aa9.08□□□□□ -0.96
CUX1-209ENST00000487284 C16orf90A8MZG2 172 aa9.07□□□□□ -0.96
CUX1-209ENST00000487284 TEN1Q86WV5 123 aa9.07□□□□□ -0.96
CUX1-209ENST00000487284 C9orf163Q8N9P6 203 aa9.07□□□□□ -0.96
CUX1-209ENST00000487284 CBY1Q9Y3M2 126 aa9.07□□□□□ -0.96
CUX1-209ENST00000487284 A0A096LNI7 61 aa9.07□□□□□ -0.96
CUX1-209ENST00000487284 A0A1B0GX51 115 aa9.07□□□□□ -0.96
CUX1-209ENST00000487284 KRTAP7-1Q8IUC3 87 aa9.07□□□□□ -0.96
CUX1-209ENST00000487284 C7orf33Q8WU49 177 aa9.07□□□□□ -0.96
CUX1-209ENST00000487284 FAM168BA1KXE4 195 aa9.06□□□□□ -0.96
CUX1-209ENST00000487284 KRTAP10-2P60368 255 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms