RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 TMEM126AQ9H061 195 aa11.11□□□□□ -0.63
SMPDL3A-202ENST00000487215 ERG28Q9UKR5 140 aa11.11□□□□□ -0.63
SMPDL3A-202ENST00000487215 TRAPPC1Q9Y5R8 145 aa11.11□□□□□ -0.63
SMPDL3A-202ENST00000487215 TMEM238C9JI98 176 aa11.1□□□□□ -0.63
SMPDL3A-202ENST00000487215 ZNF22P17026 224 aaPredicted RBP11.1□□□□□ -0.63
SMPDL3A-202ENST00000487215 C18orf32Q8TCD1 76 aa11.09□□□□□ -0.63
SMPDL3A-202ENST00000487215 PLEKHB2Q96CS7 222 aa11.09□□□□□ -0.63
SMPDL3A-202ENST00000487215 A0A096LNJ9 63 aa11.08□□□□□ -0.64
SMPDL3A-202ENST00000487215 VPREB1P12018 145 aa11.08□□□□□ -0.64
SMPDL3A-202ENST00000487215 SND1-IT1Q9HBX3 110 aa11.08□□□□□ -0.64
SMPDL3A-202ENST00000487215 M0R378 163 aa11.07□□□□□ -0.64
SMPDL3A-202ENST00000487215 BAGE3Q86Y29 109 aa11.07□□□□□ -0.64
SMPDL3A-202ENST00000487215 TMEM170BQ5T4T1 132 aa11.06□□□□□ -0.64
SMPDL3A-202ENST00000487215 SPAG11AQ6PDA7 123 aa11.06□□□□□ -0.64
SMPDL3A-202ENST00000487215 FP248Q71RG6 208 aaPredicted RBP11.05□□□□□ -0.64
SMPDL3A-202ENST00000487215 URB1-AS1Q96HZ7 61 aa11.05□□□□□ -0.64
SMPDL3A-202ENST00000487215 CBLN2Q8IUK8 224 aa11.04□□□□□ -0.64
SMPDL3A-202ENST00000487215 C11orf86A6NJI1 115 aa11.03□□□□□ -0.64
SMPDL3A-202ENST00000487215 LINC01547P58512 204 aaPredicted RBP11.03□□□□□ -0.64
SMPDL3A-202ENST00000487215 PMCHL1Q16048 86 aa11.03□□□□□ -0.64
SMPDL3A-202ENST00000487215 KRTAP13-3Q3SY46 172 aa11.03□□□□□ -0.64
SMPDL3A-202ENST00000487215 ASB16-AS1Q495Z4 193 aa11.03□□□□□ -0.64
SMPDL3A-202ENST00000487215 ZNF625Q96I27 306 aaPredicted RBP11.03□□□□□ -0.64
SMPDL3A-202ENST00000487215 LINC00337Q8N6G1 96 aa11.02□□□□□ -0.65
SMPDL3A-202ENST00000487215 Q8NDZ9 215 aa11.02□□□□□ -0.65
SMPDL3A-202ENST00000487215 HIGD2AQ9BW72 106 aa11.02□□□□□ -0.65
SMPDL3A-202ENST00000487215 NDUFA5Q16718 116 aa11.01□□□□□ -0.65
SMPDL3A-202ENST00000487215 CHTOPQ9Y3Y2 248 aaKnown RBP11.01□□□□□ -0.65
SMPDL3A-202ENST00000487215 SNAPINO95295 136 aa11□□□□□ -0.65
SMPDL3A-202ENST00000487215 SPRR4Q96PI1 79 aa11□□□□□ -0.65
SMPDL3A-202ENST00000487215 KRTAP4-1Q9BYQ7 146 aa11□□□□□ -0.65
SMPDL3A-202ENST00000487215 LINC00158P58513 81 aa10.99□□□□□ -0.65
SMPDL3A-202ENST00000487215 SVBPQ8N300 66 aa10.99□□□□□ -0.65
SMPDL3A-202ENST00000487215 APOC3P02656 99 aa10.98□□□□□ -0.65
SMPDL3A-202ENST00000487215 C4orf48Q5BLP8 95 aa10.98□□□□□ -0.65
SMPDL3A-202ENST00000487215 FSIP2Q5CZC0 6907 aa10.98□□□□□ -0.65
SMPDL3A-202ENST00000487215 TRAV12-1A0A0B4J245 112 aa10.97□□□□□ -0.65
SMPDL3A-202ENST00000487215 ATP6V1G1O75348 118 aa10.97□□□□□ -0.65
SMPDL3A-202ENST00000487215 CHCHD1Q96BP2 118 aaKnown RBP10.97□□□□□ -0.65
SMPDL3A-202ENST00000487215 DAND5Q8N907 189 aa10.96□□□□□ -0.65
SMPDL3A-202ENST00000487215 Q8NBF4 154 aa10.96□□□□□ -0.65
SMPDL3A-202ENST00000487215 TMEM223A0PJW6 202 aa10.95□□□□□ -0.66
SMPDL3A-202ENST00000487215 IFI27L1Q96BM0 104 aa10.95□□□□□ -0.66
SMPDL3A-202ENST00000487215 LINC00587B1AMM8 73 aa10.94□□□□□ -0.66
SMPDL3A-202ENST00000487215 CRCT1Q9UGL9 99 aa10.94□□□□□ -0.66
SMPDL3A-202ENST00000487215 ZNF706Q9Y5V0 76 aaPredicted RBP10.94□□□□□ -0.66
SMPDL3A-202ENST00000487215 SEC61BP60468 96 aaKnown RBP10.93□□□□□ -0.66
SMPDL3A-202ENST00000487215 HERV-K104P63124 156 aa10.92□□□□□ -0.66
SMPDL3A-202ENST00000487215 A0A0U1RRA0 63 aa10.91□□□□□ -0.66
SMPDL3A-202ENST00000487215 MEIG1Q5JSS6 88 aa10.91□□□□□ -0.66
SMPDL3A-202ENST00000487215 PRYO14603 147 aa10.89□□□□□ -0.67
SMPDL3A-202ENST00000487215 SPINK1P00995 79 aa10.89□□□□□ -0.67
SMPDL3A-202ENST00000487215 SMIM13P0DJ93 91 aa10.89□□□□□ -0.67
SMPDL3A-202ENST00000487215 S100A12P80511 92 aa10.89□□□□□ -0.67
SMPDL3A-202ENST00000487215 BOD1L2Q8IYS8 172 aa10.89□□□□□ -0.67
SMPDL3A-202ENST00000487215 MAP1LC3CQ9BXW4 147 aa10.89□□□□□ -0.67
SMPDL3A-202ENST00000487215 HSBP1O75506 76 aa10.88□□□□□ -0.67
SMPDL3A-202ENST00000487215 MYMXA0A1B0GTQ4 84 aa10.86□□□□□ -0.67
SMPDL3A-202ENST00000487215 MIR7-3HGQ8N6C7 128 aa10.86□□□□□ -0.67
SMPDL3A-202ENST00000487215 SMCR5Q8TEV8 140 aa10.85□□□□□ -0.67
SMPDL3A-202ENST00000487215 YPEL4Q96NS1 127 aa10.85□□□□□ -0.67
SMPDL3A-202ENST00000487215 KCNQ1DNQ9H478 68 aa10.85□□□□□ -0.67
SMPDL3A-202ENST00000487215 NDUFA12Q9UI09 145 aa10.85□□□□□ -0.67
SMPDL3A-202ENST00000487215 ETDCA0A1B0GVM5 59 aa10.83□□□□□ -0.68
SMPDL3A-202ENST00000487215 SPRR1AP35321 89 aa10.83□□□□□ -0.68
SMPDL3A-202ENST00000487215 LINC00483Q53H64 154 aa10.83□□□□□ -0.68
SMPDL3A-202ENST00000487215 NCR3O14931 201 aa10.82□□□□□ -0.68
SMPDL3A-202ENST00000487215 KRTAP4-16G5E9R7 235 aaPredicted RBP10.81□□□□□ -0.68
SMPDL3A-202ENST00000487215 LCE2CQ5TA81 110 aa10.81□□□□□ -0.68
SMPDL3A-202ENST00000487215 Q8N377 158 aa10.81□□□□□ -0.68
SMPDL3A-202ENST00000487215 FAM19A2Q8N3H0 131 aa10.81□□□□□ -0.68
SMPDL3A-202ENST00000487215 LEPROTL1O95214 131 aa10.8□□□□□ -0.68
SMPDL3A-202ENST00000487215 RPS29P62273 56 aaKnown RBP10.8□□□□□ -0.68
SMPDL3A-202ENST00000487215 XP32Q5T750 250 aa10.8□□□□□ -0.68
SMPDL3A-202ENST00000487215 H0Y8G0 127 aa10.79□□□□□ -0.68
SMPDL3A-202ENST00000487215 LEPROTO15243 131 aa10.79□□□□□ -0.68
SMPDL3A-202ENST00000487215 PLNP26678 52 aa10.79□□□□□ -0.68
SMPDL3A-202ENST00000487215 MOBPQ13875 183 aa10.79□□□□□ -0.68
SMPDL3A-202ENST00000487215 GAGE2AQ6NT46 116 aa10.79□□□□□ -0.68
SMPDL3A-202ENST00000487215 TRBV10-3A0A0K0K1G6 114 aa10.78□□□□□ -0.68
SMPDL3A-202ENST00000487215 IGLV9-49A0A0B4J1Y8 123 aa10.77□□□□□ -0.69
SMPDL3A-202ENST00000487215 LOC107984156A0A0G2JMH3 177 aa10.77□□□□□ -0.69
SMPDL3A-202ENST00000487215 TRBV10-2A0A0K0K1G8 114 aa10.77□□□□□ -0.69
SMPDL3A-202ENST00000487215 HERVK_113P61574 105 aa10.77□□□□□ -0.69
SMPDL3A-202ENST00000487215 ARL17AQ8IVW1 177 aa10.77□□□□□ -0.69
SMPDL3A-202ENST00000487215 HSPB8Q9UJY1 196 aa10.77□□□□□ -0.69
SMPDL3A-202ENST00000487215 NMUP48645 174 aa10.76□□□□□ -0.69
SMPDL3A-202ENST00000487215 MIEN1Q9BRT3 115 aa10.76□□□□□ -0.69
SMPDL3A-202ENST00000487215 SLC25A20O43772 301 aa10.75□□□□□ -0.69
SMPDL3A-202ENST00000487215 SSBP3-AS1Q7Z2R9 100 aa10.75□□□□□ -0.69
SMPDL3A-202ENST00000487215 ERC2-IT1O76042 136 aa10.74□□□□□ -0.69
SMPDL3A-202ENST00000487215 TRGC2P03986 189 aa10.74□□□□□ -0.69
SMPDL3A-202ENST00000487215 DDTP30046 118 aa10.74□□□□□ -0.69
SMPDL3A-202ENST00000487215 B5MCH6 92 aa10.73□□□□□ -0.69
SMPDL3A-202ENST00000487215 J3QQQ9 107 aa10.73□□□□□ -0.69
SMPDL3A-202ENST00000487215 SERF1AO75920 110 aa10.73□□□□□ -0.69
SMPDL3A-202ENST00000487215 DPM2O94777 84 aa10.73□□□□□ -0.69
SMPDL3A-202ENST00000487215 KRTAP19-2Q3LHN2 52 aa10.73□□□□□ -0.69
SMPDL3A-202ENST00000487215 LGALS3P17931 250 aaKnown RBP10.72□□□□□ -0.69
SMPDL3A-202ENST00000487215 SPANXB1Q9NS25 103 aaPredicted RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms