RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 IGHV4-30-4P0DP06 118 aa12.31□□□□□ -0.44
CCM2-209ENST00000477605 ANK2Q01484 3957 aa12.3□□□□□ -0.44
CCM2-209ENST00000477605 COX7CP15954 63 aa12.3□□□□□ -0.44
CCM2-209ENST00000477605 DEFB4AO15263 64 aa12.29□□□□□ -0.44
CCM2-209ENST00000477605 C9orf153Q5TBE3 101 aa12.29□□□□□ -0.44
CCM2-209ENST00000477605 PRR34Q9NV39 138 aa12.29□□□□□ -0.44
CCM2-209ENST00000477605 SPAG11BQ08648 103 aa12.28□□□□□ -0.44
CCM2-209ENST00000477605 RPL18AQ02543 176 aaKnown RBP12.28□□□□□ -0.44
CCM2-209ENST00000477605 C9orf116Q5BN46 136 aaPredicted RBP12.28□□□□□ -0.44
CCM2-209ENST00000477605 ATP5EP2Q5VTU8 51 aa12.28□□□□□ -0.44
CCM2-209ENST00000477605 LINC00575Q6W349 94 aa12.28□□□□□ -0.44
CCM2-209ENST00000477605 GVQW2A0A096LPI5 108 aaPredicted RBP12.27□□□□□ -0.45
CCM2-209ENST00000477605 C6orf99Q4VX62 202 aa12.27□□□□□ -0.45
CCM2-209ENST00000477605 Q8N3U1 123 aa12.27□□□□□ -0.45
CCM2-209ENST00000477605 H3BQ85 93 aa12.26□□□□□ -0.45
CCM2-209ENST00000477605 CELA1Q9UNI1 258 aa12.26□□□□□ -0.45
CCM2-209ENST00000477605 UNQ6190/PRO20217Q6UXQ8 127 aa12.25□□□□□ -0.45
CCM2-209ENST00000477605 C2orf48Q96LS8 159 aa12.25□□□□□ -0.45
CCM2-209ENST00000477605 IGKV3D-7A0A0C4DH55 119 aa12.25□□□□□ -0.45
CCM2-209ENST00000477605 IGLV6-57P01721 117 aa12.23□□□□□ -0.45
CCM2-209ENST00000477605 Q8NDZ9 215 aa12.23□□□□□ -0.45
CCM2-209ENST00000477605 CRYGAP11844 174 aa12.23□□□□□ -0.45
CCM2-209ENST00000477605 C10orf25Q5T742 122 aa12.23□□□□□ -0.45
CCM2-209ENST00000477605 TENM1Q9UKZ4 2725 aa12.22□□□□□ -0.45
CCM2-209ENST00000477605 hADV29S1A0JD25 119 aa12.22□□□□□ -0.45
CCM2-209ENST00000477605 WIPF1O43516 503 aa12.22□□□□□ -0.45
CCM2-209ENST00000477605 LYPD5Q6UWN5 251 aa12.22□□□□□ -0.45
CCM2-209ENST00000477605 C6orf223Q8N319 242 aa12.21□□□□□ -0.45
CCM2-209ENST00000477605 WFDC9Q8NEX5 89 aa12.21□□□□□ -0.45
CCM2-209ENST00000477605 KLK12Q9UKR0 248 aa12.21□□□□□ -0.45
CCM2-209ENST00000477605 ZNF561-AS1K7EIQ3 104 aa12.2□□□□□ -0.46
CCM2-209ENST00000477605 ENHOQ6UWT2 76 aa12.2□□□□□ -0.46
CCM2-209ENST00000477605 TRBV10-3A0A0K0K1G6 114 aa12.2□□□□□ -0.46
CCM2-209ENST00000477605 FBN3Q75N90 2809 aa12.19□□□□□ -0.46
CCM2-209ENST00000477605 HTN3P15516 51 aa12.19□□□□□ -0.46
CCM2-209ENST00000477605 LOC110117498A0A087WWA1 95 aa12.18□□□□□ -0.46
CCM2-209ENST00000477605 SMIM20Q8N5G0 67 aa12.18□□□□□ -0.46
CCM2-209ENST00000477605 SERP2Q8N6R1 65 aa12.18□□□□□ -0.46
CCM2-209ENST00000477605 RBM3P98179 157 aaKnown RBP12.18□□□□□ -0.46
CCM2-209ENST00000477605 H3BNG1 76 aa12.17□□□□□ -0.46
CCM2-209ENST00000477605 UBL5Q9BZL1 73 aa12.17□□□□□ -0.46
CCM2-209ENST00000477605 PDE6GP18545 87 aa12.17□□□□□ -0.46
CCM2-209ENST00000477605 USP17L23D6RBM5 183 aa12.16□□□□□ -0.46
CCM2-209ENST00000477605 GHRHP01286 108 aa12.15□□□□□ -0.46
CCM2-209ENST00000477605 Q6ZQT0 140 aa12.15□□□□□ -0.46
CCM2-209ENST00000477605 C3orf56Q8N813 242 aa12.15□□□□□ -0.46
CCM2-209ENST00000477605 C6orf48Q9UBA6 75 aa12.14□□□□□ -0.47
CCM2-209ENST00000477605 TRBV7-6A0A0J9YX20 115 aa12.14□□□□□ -0.47
CCM2-209ENST00000477605 A0A087WVE0 104 aa12.13□□□□□ -0.47
CCM2-209ENST00000477605 DIRC1Q969H9 104 aa12.12□□□□□ -0.47
CCM2-209ENST00000477605 TRAV23DV6A0A075B6W5 121 aa12.12□□□□□ -0.47
CCM2-209ENST00000477605 LAMTOR3Q9UHA4 124 aa12.12□□□□□ -0.47
CCM2-209ENST00000477605 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.1□□□□□ -0.47
CCM2-209ENST00000477605 EGFEM1PQ0D2K5 195 aa12.1□□□□□ -0.47
CCM2-209ENST00000477605 DSCR8Q96T75 97 aa12.09□□□□□ -0.47
CCM2-209ENST00000477605 Q6ZQY7 126 aa12.09□□□□□ -0.47
CCM2-209ENST00000477605 UPK3BQ9BT76 320 aa12.09□□□□□ -0.47
CCM2-209ENST00000477605 F8WDY8 70 aa12.07□□□□□ -0.48
CCM2-209ENST00000477605 ZNF73O43830 326 aaPredicted RBP12.07□□□□□ -0.48
CCM2-209ENST00000477605 BCE1O60756 84 aa12.07□□□□□ -0.48
CCM2-209ENST00000477605 COX7BP24311 80 aa12.07□□□□□ -0.48
CCM2-209ENST00000477605 CAMK2N2Q96S95 79 aa12.07□□□□□ -0.48
CCM2-209ENST00000477605 NBEAL1Q6ZS30 2694 aa12.07□□□□□ -0.48
CCM2-209ENST00000477605 TRRAPQ9Y4A5 3859 aa12.07□□□□□ -0.48
CCM2-209ENST00000477605 KRTAP26-1Q6PEX3 210 aa12.06□□□□□ -0.48
CCM2-209ENST00000477605 ELOF1P60002 83 aaKnown RBP12.06□□□□□ -0.48
CCM2-209ENST00000477605 KPRPQ5T749 579 aaPredicted RBP12.06□□□□□ -0.48
CCM2-209ENST00000477605 M0R378 163 aa12.05□□□□□ -0.48
CCM2-209ENST00000477605 VPREB1P12018 145 aa12.05□□□□□ -0.48
CCM2-209ENST00000477605 XAGE1AQ9HD64 81 aa12.05□□□□□ -0.48
CCM2-209ENST00000477605 RPS28P62857 69 aaKnown RBP12.04□□□□□ -0.48
CCM2-209ENST00000477605 TMEM258P61165 79 aa12.04□□□□□ -0.48
CCM2-209ENST00000477605 FAM19A1Q7Z5A9 133 aa12.03□□□□□ -0.48
CCM2-209ENST00000477605 WFDC10BQ8IUB3 73 aa12.03□□□□□ -0.48
CCM2-209ENST00000477605 MGAM2Q2M2H8 2515 aa12.01□□□□□ -0.49
CCM2-209ENST00000477605 NDUFC2-KCTD14E9PQ53 114 aa12.01□□□□□ -0.49
CCM2-209ENST00000477605 J3KT08 172 aa12.01□□□□□ -0.49
CCM2-209ENST00000477605 NBEAL2Q6ZNJ1 2754 aa12□□□□□ -0.49
CCM2-209ENST00000477605 TRBV7-4A0A0J9YYF1 115 aa12□□□□□ -0.49
CCM2-209ENST00000477605 CXCL6P80162 114 aa12□□□□□ -0.49
CCM2-209ENST00000477605 HIGD2BQ4VC39 106 aa12□□□□□ -0.49
CCM2-209ENST00000477605 Q6ZVQ6 151 aa12□□□□□ -0.49
CCM2-209ENST00000477605 LINC01547P58512 204 aaPredicted RBP11.99□□□□□ -0.49
CCM2-209ENST00000477605 Q6ZRU5 148 aa11.99□□□□□ -0.49
CCM2-209ENST00000477605 C15orf56Q8N910 161 aa11.99□□□□□ -0.49
CCM2-209ENST00000477605 PKD1L1Q8TDX9 2849 aa11.97□□□□□ -0.49
CCM2-209ENST00000477605 LINC01556Q5JQF7 62 aa11.96□□□□□ -0.49
CCM2-209ENST00000477605 C1orf43Q9BWL3 253 aa11.96□□□□□ -0.49
CCM2-209ENST00000477605 M0R2N4 97 aa11.96□□□□□ -0.5
CCM2-209ENST00000477605 Q6ZTC4 211 aa11.96□□□□□ -0.5
CCM2-209ENST00000477605 LINC00528Q8N1L1 170 aa11.96□□□□□ -0.5
CCM2-209ENST00000477605 CYSTM1Q9H1C7 97 aa11.96□□□□□ -0.5
CCM2-209ENST00000477605 CMYA5Q8N3K9 4069 aa11.96□□□□□ -0.5
CCM2-209ENST00000477605 ESRGQ1W209 222 aa11.95□□□□□ -0.5
CCM2-209ENST00000477605 HAMPP81172 84 aa11.95□□□□□ -0.5
CCM2-209ENST00000477605 TRAV7A0A075B6U4 112 aa11.93□□□□□ -0.5
CCM2-209ENST00000477605 RETNQ9HD89 108 aa11.93□□□□□ -0.5
CCM2-209ENST00000477605 VWFP04275 2813 aa11.91□□□□□ -0.5
CCM2-209ENST00000477605 LOC107984640A0A0U1RRK4 108 aa11.91□□□□□ -0.5
CCM2-209ENST00000477605 KRTAP10-11P60412 298 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms