RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 SFTA2Q6UW10 78 aa7.19□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 RPL37AP8A6NKH3 93 aa7.18□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 KRTAP13-2Q52LG2 175 aa7.18□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 IGLV5-39A0A0G2JS06 123 aa7.17□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 C11orf86A6NJI1 115 aa7.17□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 CRYGAP11844 174 aa7.17□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 LINC00310P59036 64 aa7.16□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 HIST1H2BKO60814 126 aa7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 TSPAN13O95857 204 aa7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 HIST1H2BJP06899 126 aa7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 HIST1H2BOP23527 126 aa7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 PLNP26678 52 aa7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 HIST1H2BBP33778 126 aa7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 HIST1H2BDP58876 126 aa7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 HIST1H2BCP62807 126 aa7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 HIST2H2BEQ16778 126 aa7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 TYMSOSQ8TAI1 123 aa7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 HIST1H2BHQ93079 126 aa7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 HIST1H2BNQ99877 126 aa7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 HIST1H2BMQ99879 126 aa7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 ANAPC11Q9NYG5 84 aa7.15□□□□□ -1.26
MSH5-SAPCD1-205ENST00000476085 GAGE10A6NGK3 116 aa7.14□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 H0Y8G0 127 aa7.14□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 FABP4P15090 132 aa7.14□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 FAM229BQ4G0N7 80 aa7.14□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 MAP1LC3CQ9BXW4 147 aa7.14□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 TMEM223A0PJW6 202 aa7.13□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 COX17Q14061 63 aa7.13□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 VPREB1P12018 145 aa7.12□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 NKAPP1Q8N9T2 125 aa7.12□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 DPM2O94777 84 aa7.11□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 CTAG1AP78358 180 aa7.11□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 Q8NDZ9 215 aa7.11□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 SND1-IT1Q9HBX3 110 aa7.11□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 IGKV2-28A0A075B6P5 120 aa7.1□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 LINC00587B1AMM8 73 aa7.1□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 ATP6V1G1O75348 118 aa7.1□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 IGKV2D-28P01615 120 aa7.1□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 HERVK_113P61574 105 aa7.1□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 IGKCP01834 107 aa7.09□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 PFN2P35080 140 aa7.09□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 UBE2AP49459 152 aa7.09□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 HERV-K104P63124 156 aa7.09□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 COA6Q5JTJ3 125 aaKnown RBP7.09□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 ZNF625Q96I27 306 aaPredicted RBP7.09□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 TMEM126AQ9H061 195 aa7.09□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 ERG28Q9UKR5 140 aa7.09□□□□□ -1.27
MSH5-SAPCD1-205ENST00000476085 M0R378 163 aa7.08□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 LINC00304Q8N9R0 145 aa7.08□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 PLEKHB2Q96CS7 222 aa7.08□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 TMEM238C9JI98 176 aa7.07□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 SYS1-DBNDD2H3BUS1 97 aa7.07□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 PRLHP81277 87 aa7.07□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 MYMXA0A1B0GTQ4 84 aa7.06□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 LEPROTO15243 131 aa7.06□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 RPL24P83731 157 aaKnown RBP7.06□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 TPRXLQ17RH7 258 aa7.06□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 PET117Q6UWS5 81 aa7.06□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 A0A0U1RQV1 116 aa7.05□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 NMUP48645 174 aa7.05□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 LINC00158P58513 81 aa7.05□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 FAM19A1Q7Z5A9 133 aa7.05□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 RETNLBQ9BQ08 111 aa7.05□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 NDUFA12Q9UI09 145 aa7.05□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 IGKV2D-26A0A0A0MRZ7 120 aa7.04□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 J3QQQ9 107 aa7.04□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 AKR1D1P51857 326 aa7.04□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 MEIG1Q5JSS6 88 aa7.04□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 PMCHL2Q9BQD1 86 aa7.04□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 MUC17Q685J3 4493 aa7.03□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 C20orf202A1L168 122 aa7.03□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 LGALS3P17931 250 aaKnown RBP7.03□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 LINC01545Q5VT33 79 aa7.03□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 C3orf22Q8N5N4 141 aa7.03□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 FAT4Q6V0I7 4981 aa7.03□□□□□ -1.28
MSH5-SAPCD1-205ENST00000476085 IGLV7-46A0A075B6I9 117 aa7.01□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 E9PLD3 99 aa7.01□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 S100A6P06703 90 aa7.01□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 C3orf79P0CE67 100 aa7.01□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 KRTDAPP60985 99 aa7.01□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 KRTAP9-2Q9BYQ4 174 aa7.01□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 KRTAP4-16G5E9R7 235 aaPredicted RBP7□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 SMIM13P0DJ93 91 aa7□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 SPRR4Q96PI1 79 aa7□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 A0A0U1RRA0 63 aa6.99□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 S100A2P29034 98 aa6.99□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 SPRR1AP35321 89 aa6.99□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 TSPEAR-AS2P59090 65 aa6.99□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 SPAG11AQ6PDA7 123 aa6.98□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 MIR7-3HGQ8N6C7 128 aa6.98□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 KCNQ1DNQ9H478 68 aa6.98□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 MIEN1Q9BRT3 115 aa6.97□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 HIGD2AQ9BW72 106 aa6.97□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 CDIP1Q9H305 208 aa6.97□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 PPDPFQ9H3Y8 114 aa6.97□□□□□ -1.29
MSH5-SAPCD1-205ENST00000476085 PRYO14603 147 aa6.96□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 BOD1L2Q8IYS8 172 aa6.96□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 HIST3H2BBQ8N257 126 aa6.96□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 LINC00337Q8N6G1 96 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms