RNA–Protein interactions for RNA: ENST00000475973.1

UBR4-212, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 600 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-212	ENST00000475973	UBE2L6	O14933	153 aa		4.69	□□□□□ -1.66
UBR4-212	ENST00000475973	COX17	Q14061	63 aa		4.69	□□□□□ -1.66
UBR4-212	ENST00000475973	KRTAP19-4	Q3LI73	84 aa		4.69	□□□□□ -1.66
UBR4-212	ENST00000475973	UPK3B	Q9BT76	320 aa		4.69	□□□□□ -1.66
UBR4-212	ENST00000475973	TRBV10-3	A0A0K0K1G6	114 aa		4.68	□□□□□ -1.66
UBR4-212	ENST00000475973	FAM236A	A0A1B0GUQ0	79 aa		4.68	□□□□□ -1.66
UBR4-212	ENST00000475973	FAM236B	A0A1B0GV22	79 aa		4.68	□□□□□ -1.66
UBR4-212	ENST00000475973	SMIM9	A6NGZ8	99 aa		4.68	□□□□□ -1.66
UBR4-212	ENST00000475973	COX7C	P15954	63 aa		4.68	□□□□□ -1.66
UBR4-212	ENST00000475973	RPS28	P62857	69 aa	Known RBP	4.68	□□□□□ -1.66
UBR4-212	ENST00000475973	TM2D3	Q9BRN9	247 aa		4.68	□□□□□ -1.66
UBR4-212	ENST00000475973		A0A0U1RRA0	63 aa		4.67	□□□□□ -1.66
UBR4-212	ENST00000475973	CCK	P06307	115 aa		4.67	□□□□□ -1.66
UBR4-212	ENST00000475973	CASC10	Q5T4H9	136 aa		4.67	□□□□□ -1.66
UBR4-212	ENST00000475973		Q9HAA7	133 aa		4.67	□□□□□ -1.66
UBR4-212	ENST00000475973	LINC00846	Q9NV44	126 aa		4.67	□□□□□ -1.66
UBR4-212	ENST00000475973	TRGV2	A0A075B6R0	118 aa		4.66	□□□□□ -1.66
UBR4-212	ENST00000475973		A0A0J9YWU9	116 aa		4.66	□□□□□ -1.66
UBR4-212	ENST00000475973	ATOX1	O00244	68 aa		4.66	□□□□□ -1.66
UBR4-212	ENST00000475973	BCE1	O60756	84 aa		4.66	□□□□□ -1.66
UBR4-212	ENST00000475973	RPL18A	Q02543	176 aa	Known RBP	4.66	□□□□□ -1.66
UBR4-212	ENST00000475973	CD164L2	Q6UWJ8	174 aa		4.66	□□□□□ -1.66
UBR4-212	ENST00000475973	GVQW2	A0A096LPI5	108 aa	Predicted RBP	4.65	□□□□□ -1.67
UBR4-212	ENST00000475973	TRGV4	A0A0C4DH28	118 aa		4.65	□□□□□ -1.67
UBR4-212	ENST00000475973	LYRM9	A8MSI8	78 aa		4.65	□□□□□ -1.67
UBR4-212	ENST00000475973	JMJD7-PLA2G4B	H0Y9G9	81 aa		4.65	□□□□□ -1.67
UBR4-212	ENST00000475973	LINC00158	P58513	81 aa		4.65	□□□□□ -1.67
UBR4-212	ENST00000475973		Q8N814	137 aa		4.65	□□□□□ -1.67
UBR4-212	ENST00000475973	WFDC10A	Q9H1F0	79 aa		4.65	□□□□□ -1.67
UBR4-212	ENST00000475973	PRO0255	Q9UI72	69 aa		4.65	□□□□□ -1.67
UBR4-212	ENST00000475973	LECT2	O14960	151 aa		4.64	□□□□□ -1.67
UBR4-212	ENST00000475973	ATP5EP2	Q5VTU8	51 aa		4.64	□□□□□ -1.67
UBR4-212	ENST00000475973	ORMDL1	Q9P0S3	153 aa		4.64	□□□□□ -1.67
UBR4-212	ENST00000475973	COL7A1	Q02388	2944 aa		4.64	□□□□□ -1.67
UBR4-212	ENST00000475973	TENM3	Q9P273	2699 aa		4.63	□□□□□ -1.67
UBR4-212	ENST00000475973	LOC110117498	A0A087WWA1	95 aa		4.63	□□□□□ -1.67
UBR4-212	ENST00000475973	LCE6A	A0A183	80 aa		4.63	□□□□□ -1.67
UBR4-212	ENST00000475973	TMEM256-PLSCR3	K7ERE1	68 aa		4.63	□□□□□ -1.67
UBR4-212	ENST00000475973	DNAL4	O96015	105 aa		4.63	□□□□□ -1.67
UBR4-212	ENST00000475973	C6orf226	Q5I0X4	101 aa		4.63	□□□□□ -1.67
UBR4-212	ENST00000475973	GAGE2A	Q6NT46	116 aa		4.63	□□□□□ -1.67
UBR4-212	ENST00000475973	C6orf223	Q8N319	242 aa		4.63	□□□□□ -1.67
UBR4-212	ENST00000475973		Q8NDZ9	215 aa		4.63	□□□□□ -1.67
UBR4-212	ENST00000475973	PRR34	Q9NV39	138 aa		4.63	□□□□□ -1.67
UBR4-212	ENST00000475973	KMT2C	Q8NEZ4	4911 aa	Known RBP	4.63	□□□□□ -1.67
UBR4-212	ENST00000475973	DNAH9	Q9NYC9	4486 aa		4.62	□□□□□ -1.67
UBR4-212	ENST00000475973		H3BQ85	93 aa		4.62	□□□□□ -1.67
UBR4-212	ENST00000475973	IGLV6-57	P01721	117 aa		4.62	□□□□□ -1.67
UBR4-212	ENST00000475973	RPL35A	P18077	110 aa	Known RBP	4.62	□□□□□ -1.67
UBR4-212	ENST00000475973	S100A7L2	Q5SY68	101 aa		4.62	□□□□□ -1.67
UBR4-212	ENST00000475973	LINC00575	Q6W349	94 aa		4.62	□□□□□ -1.67
UBR4-212	ENST00000475973	SMIM20	Q8N5G0	67 aa		4.62	□□□□□ -1.67
UBR4-212	ENST00000475973	SERP2	Q8N6R1	65 aa		4.62	□□□□□ -1.67
UBR4-212	ENST00000475973	RETN	Q9HD89	108 aa		4.62	□□□□□ -1.67
UBR4-212	ENST00000475973	C14orf132	Q9NPU4	83 aa		4.62	□□□□□ -1.67
UBR4-212	ENST00000475973	TOMM7	Q9P0U1	55 aa		4.62	□□□□□ -1.67
UBR4-212	ENST00000475973	EPM2A	B3EWF7	344 aa		4.61	□□□□□ -1.67
UBR4-212	ENST00000475973	NCR3	O14931	201 aa		4.61	□□□□□ -1.67
UBR4-212	ENST00000475973	APOC4	P55056	127 aa		4.61	□□□□□ -1.67
UBR4-212	ENST00000475973	C5orf47	Q569G3	176 aa		4.61	□□□□□ -1.67
UBR4-212	ENST00000475973	C9orf153	Q5TBE3	101 aa		4.61	□□□□□ -1.67
UBR4-212	ENST00000475973	NBEAL2	Q6ZNJ1	2754 aa		4.6	□□□□□ -1.67
UBR4-212	ENST00000475973	TRBV7-6	A0A0J9YX20	115 aa		4.6	□□□□□ -1.67
UBR4-212	ENST00000475973	PFN2	P35080	140 aa		4.6	□□□□□ -1.67
UBR4-212	ENST00000475973		Q6ZQT0	140 aa		4.6	□□□□□ -1.67
UBR4-212	ENST00000475973	USP17L23	D6RBM5	183 aa		4.59	□□□□□ -1.67
UBR4-212	ENST00000475973	NDUFC2-KCTD14	E9PQ53	114 aa		4.59	□□□□□ -1.67
UBR4-212	ENST00000475973	SLPI	P03973	132 aa		4.59	□□□□□ -1.67
UBR4-212	ENST00000475973	XCL1	P47992	114 aa		4.59	□□□□□ -1.67
UBR4-212	ENST00000475973	TMEM258	P61165	79 aa		4.59	□□□□□ -1.67
UBR4-212	ENST00000475973	KRTAP26-1	Q6PEX3	210 aa		4.59	□□□□□ -1.67
UBR4-212	ENST00000475973	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	4.59	□□□□□ -1.67
UBR4-212	ENST00000475973	CYSTM1	Q9H1C7	97 aa		4.59	□□□□□ -1.67
UBR4-212	ENST00000475973	CELA1	Q9UNI1	258 aa		4.59	□□□□□ -1.67
UBR4-212	ENST00000475973	STAB2	Q8WWQ8	2551 aa		4.58	□□□□□ -1.68
UBR4-212	ENST00000475973	NUPR2	A6NF83	97 aa		4.58	□□□□□ -1.68
UBR4-212	ENST00000475973	PDE6G	P18545	87 aa		4.58	□□□□□ -1.68
UBR4-212	ENST00000475973	REG3A	Q06141	175 aa		4.58	□□□□□ -1.68
UBR4-212	ENST00000475973	LELP1	Q5T871	98 aa		4.58	□□□□□ -1.68
UBR4-212	ENST00000475973		Q8NAQ8	132 aa		4.58	□□□□□ -1.68
UBR4-212	ENST00000475973	IGKV3D-7	A0A0C4DH55	119 aa		4.57	□□□□□ -1.68
UBR4-212	ENST00000475973	TRBV7-4	A0A0J9YYF1	115 aa		4.57	□□□□□ -1.68
UBR4-212	ENST00000475973	hADV29S1	A0JD25	119 aa		4.57	□□□□□ -1.68
UBR4-212	ENST00000475973		F8WDY8	70 aa		4.57	□□□□□ -1.68
UBR4-212	ENST00000475973	PRR3	P79522	188 aa	Known RBP	4.57	□□□□□ -1.68
UBR4-212	ENST00000475973	DEFB135	Q30KP9	77 aa		4.57	□□□□□ -1.68
UBR4-212	ENST00000475973	C6orf99	Q4VX62	202 aa		4.57	□□□□□ -1.68
UBR4-212	ENST00000475973	LINC00269	Q8N2A0	174 aa		4.57	□□□□□ -1.68
UBR4-212	ENST00000475973	KRTAP3-1	Q9BYR8	98 aa		4.57	□□□□□ -1.68
UBR4-212	ENST00000475973	RYR3	Q15413	4870 aa		4.57	□□□□□ -1.68
UBR4-212	ENST00000475973		A0A087WVE0	104 aa		4.56	□□□□□ -1.68
UBR4-212	ENST00000475973	IGKV3OR2-268	A0A0C4DH90	116 aa		4.56	□□□□□ -1.68
UBR4-212	ENST00000475973		H3BNG1	76 aa		4.56	□□□□□ -1.68
UBR4-212	ENST00000475973	DEFB130B	P0DP73	79 aa		4.56	□□□□□ -1.68
UBR4-212	ENST00000475973	DEFB130A	P0DP74	79 aa		4.56	□□□□□ -1.68
UBR4-212	ENST00000475973	MIF	P14174	115 aa		4.56	□□□□□ -1.68
UBR4-212	ENST00000475973	C10orf25	Q5T742	122 aa		4.56	□□□□□ -1.68
UBR4-212	ENST00000475973	OR13C6P	Q8NH95	151 aa		4.56	□□□□□ -1.68
UBR4-212	ENST00000475973	DPH3	Q96FX2	82 aa		4.56	□□□□□ -1.68
UBR4-212	ENST00000475973	HUWE1	Q7Z6Z7	4374 aa	Known RBP	4.56	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms