RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 LOC389332A0A1B0GUA5 103 aa4.38□□□□□ -1.71
USP54-211ENST00000474929 NPYP01303 97 aa4.38□□□□□ -1.71
USP54-211ENST00000474929 ATP5L2Q7Z4Y8 100 aa4.38□□□□□ -1.71
USP54-211ENST00000474929 MRPL55Q7Z7F7 128 aaKnown RBP4.38□□□□□ -1.71
USP54-211ENST00000474929 ORAOV1Q8WV07 137 aa4.38□□□□□ -1.71
USP54-211ENST00000474929 C2orf88Q9BSF0 95 aa4.38□□□□□ -1.71
USP54-211ENST00000474929 CDC42SE2Q9NRR3 84 aa4.38□□□□□ -1.71
USP54-211ENST00000474929 C6orf48Q9UBA6 75 aa4.38□□□□□ -1.71
USP54-211ENST00000474929 C22orf24Q9Y442 160 aa4.38□□□□□ -1.71
USP54-211ENST00000474929 TCAPO15273 167 aa4.37□□□□□ -1.71
USP54-211ENST00000474929 SLC25A20O43772 301 aa4.37□□□□□ -1.71
USP54-211ENST00000474929 RNASE13Q5GAN3 156 aaKnown RBP4.37□□□□□ -1.71
USP54-211ENST00000474929 PRELID3AQ96N28 172 aa4.37□□□□□ -1.71
USP54-211ENST00000474929 C20orf78Q9BR46 151 aa4.37□□□□□ -1.71
USP54-211ENST00000474929 KRTAP9-8Q9BYQ0 159 aa4.37□□□□□ -1.71
USP54-211ENST00000474929 C20orf202A1L168 122 aa4.36□□□□□ -1.71
USP54-211ENST00000474929 PPBPP02775 128 aa4.36□□□□□ -1.71
USP54-211ENST00000474929 KRTAP19-6Q3LI70 58 aa4.36□□□□□ -1.71
USP54-211ENST00000474929 C9orf129Q5T035 196 aaKnown RBP4.36□□□□□ -1.71
USP54-211ENST00000474929 KRTAP13-1Q8IUC0 172 aa4.36□□□□□ -1.71
USP54-211ENST00000474929 ORMDL3Q8N138 153 aa4.36□□□□□ -1.71
USP54-211ENST00000474929 RPL39P62891 51 aaKnown RBP4.35□□□□□ -1.71
USP54-211ENST00000474929 KIAA1644Q3SXP7 199 aa4.35□□□□□ -1.71
USP54-211ENST00000474929 C5orf38Q86SI9 138 aa4.35□□□□□ -1.71
USP54-211ENST00000474929 C3orf22Q8N5N4 141 aa4.35□□□□□ -1.71
USP54-211ENST00000474929 C14orf144Q96I85 54 aa4.35□□□□□ -1.71
USP54-211ENST00000474929 SMIM2Q9BVW6 85 aa4.35□□□□□ -1.71
USP54-211ENST00000474929 TRAV13-1A0A0B4J241 112 aa4.34□□□□□ -1.71
USP54-211ENST00000474929 RPL32P62910 135 aaKnown RBP4.34□□□□□ -1.71
USP54-211ENST00000474929 PMCHL1Q16048 86 aa4.34□□□□□ -1.71
USP54-211ENST00000474929 C21orf62-AS1Q17RA5 79 aa4.34□□□□□ -1.71
USP54-211ENST00000474929 UNQ6190/PRO20217Q6UXQ8 127 aa4.34□□□□□ -1.71
USP54-211ENST00000474929 TEX43Q6ZNM6 134 aa4.34□□□□□ -1.71
USP54-211ENST00000474929 MRPL18Q9H0U6 180 aaKnown RBP4.34□□□□□ -1.71
USP54-211ENST00000474929 MAP1LC3AQ9H492 121 aa4.34□□□□□ -1.71
USP54-211ENST00000474929 CSDC2Q9Y534 153 aaKnown RBP4.34□□□□□ -1.71
USP54-211ENST00000474929 C10orf25Q5T742 122 aa4.33□□□□□ -1.72
USP54-211ENST00000474929 Q6ZUT4 128 aa4.33□□□□□ -1.72
USP54-211ENST00000474929 M0R143 59 aa4.32□□□□□ -1.72
USP54-211ENST00000474929 IFI27P40305 119 aaPredicted RBP4.32□□□□□ -1.72
USP54-211ENST00000474929 BAGE3Q86Y29 109 aa4.32□□□□□ -1.72
USP54-211ENST00000474929 Q8N377 158 aa4.32□□□□□ -1.72
USP54-211ENST00000474929 Q8N8P6 123 aa4.32□□□□□ -1.72
USP54-211ENST00000474929 Q8NBF4 154 aa4.32□□□□□ -1.72
USP54-211ENST00000474929 CHCHD1Q96BP2 118 aaKnown RBP4.32□□□□□ -1.72
USP54-211ENST00000474929 MIEN1Q9BRT3 115 aa4.32□□□□□ -1.72
USP54-211ENST00000474929 TIMM21Q9BVV7 248 aa4.32□□□□□ -1.72
USP54-211ENST00000474929 ZNF706Q9Y5V0 76 aaPredicted RBP4.32□□□□□ -1.72
USP54-211ENST00000474929 PRSS47A8MTI9 375 aa4.31□□□□□ -1.72
USP54-211ENST00000474929 SCGB1D1O95968 90 aa4.31□□□□□ -1.72
USP54-211ENST00000474929 PDZD11Q5EBL8 140 aa4.31□□□□□ -1.72
USP54-211ENST00000474929 ZC2HC1BQ5TFG8 222 aa4.31□□□□□ -1.72
USP54-211ENST00000474929 FAM104AQ969W3 186 aa4.31□□□□□ -1.72
USP54-211ENST00000474929 GEMIN7Q9H840 131 aaKnown RBP4.31□□□□□ -1.72
USP54-211ENST00000474929 SPANXA1Q9NS26 97 aa4.31□□□□□ -1.72
USP54-211ENST00000474929 LAMTOR2Q9Y2Q5 125 aa4.31□□□□□ -1.72
USP54-211ENST00000474929 SERF1AO75920 110 aa4.3□□□□□ -1.72
USP54-211ENST00000474929 VAMP8Q9BV40 100 aa4.3□□□□□ -1.72
USP54-211ENST00000474929 IGLV4-3A0A075B6K6 122 aa4.29□□□□□ -1.72
USP54-211ENST00000474929 MRPS36P82909 103 aaKnown RBP4.29□□□□□ -1.72
USP54-211ENST00000474929 ORMDL2Q53FV1 153 aa4.29□□□□□ -1.72
USP54-211ENST00000474929 LCE4AQ5TA78 99 aa4.29□□□□□ -1.72
USP54-211ENST00000474929 C2orf66Q6UXQ4 117 aa4.29□□□□□ -1.72
USP54-211ENST00000474929 ALKBH7Q9BT30 221 aaPredicted RBP4.29□□□□□ -1.72
USP54-211ENST00000474929 VCX2Q9H322 139 aa4.29□□□□□ -1.72
USP54-211ENST00000474929 NXT2Q9NPJ8 142 aaKnown RBP4.29□□□□□ -1.72
USP54-211ENST00000474929 UQCR10Q9UDW1 63 aa4.29□□□□□ -1.72
USP54-211ENST00000474929 CYSLTR1Q9Y271 337 aa4.29□□□□□ -1.72
USP54-211ENST00000474929 HSBP1O75506 76 aa4.28□□□□□ -1.72
USP54-211ENST00000474929 LINC00310P59036 64 aa4.28□□□□□ -1.72
USP54-211ENST00000474929 PET117Q6UWS5 81 aa4.28□□□□□ -1.72
USP54-211ENST00000474929 C18orf32Q8TCD1 76 aa4.28□□□□□ -1.72
USP54-211ENST00000474929 PLEKHB2Q96CS7 222 aa4.28□□□□□ -1.72
USP54-211ENST00000474929 TMEM141Q96I45 108 aa4.28□□□□□ -1.72
USP54-211ENST00000474929 LINC00167Q96N53 147 aa4.28□□□□□ -1.72
USP54-211ENST00000474929 PYGO1Q9Y3Y4 419 aa4.28□□□□□ -1.72
USP54-211ENST00000474929 IGHV3OR16-9A0A0B4J2B5 98 aa4.27□□□□□ -1.73
USP54-211ENST00000474929 IGIPA6NJ69 53 aa4.27□□□□□ -1.73
USP54-211ENST00000474929 RPL37AP8A6NKH3 93 aa4.27□□□□□ -1.73
USP54-211ENST00000474929 LINC00614P0C842 121 aa4.27□□□□□ -1.73
USP54-211ENST00000474929 COL5A1-AS1Q5SY13 56 aa4.27□□□□□ -1.73
USP54-211ENST00000474929 Q6ZN92 141 aa4.27□□□□□ -1.73
USP54-211ENST00000474929 FA2HQ7L5A8 372 aa4.27□□□□□ -1.73
USP54-211ENST00000474929 NKAPP1Q8N9T2 125 aa4.27□□□□□ -1.73
USP54-211ENST00000474929 SCGB3A1Q96QR1 104 aa4.27□□□□□ -1.73
USP54-211ENST00000474929 PRO1933Q9H354 126 aa4.27□□□□□ -1.73
USP54-211ENST00000474929 K7EMI3 77 aa4.26□□□□□ -1.73
USP54-211ENST00000474929 G0S2P27469 103 aa4.26□□□□□ -1.73
USP54-211ENST00000474929 PRLHP81277 87 aa4.26□□□□□ -1.73
USP54-211ENST00000474929 Q6Q795 121 aa4.26□□□□□ -1.73
USP54-211ENST00000474929 FAM19A1Q7Z5A9 133 aa4.26□□□□□ -1.73
USP54-211ENST00000474929 PMCHL2Q9BQD1 86 aa4.26□□□□□ -1.73
USP54-211ENST00000474929 SNHG12Q9BXW3 62 aa4.26□□□□□ -1.73
USP54-211ENST00000474929 HSPB8Q9UJY1 196 aa4.26□□□□□ -1.73
USP54-211ENST00000474929 PRSS2P07478 247 aa4.25□□□□□ -1.73
USP54-211ENST00000474929 C3orf79P0CE67 100 aa4.25□□□□□ -1.73
USP54-211ENST00000474929 IGLC3P0DOY3 106 aa4.25□□□□□ -1.73
USP54-211ENST00000474929 KIAA0087Q14695 138 aa4.25□□□□□ -1.73
USP54-211ENST00000474929 TOMM6Q96B49 74 aa4.25□□□□□ -1.73
USP54-211ENST00000474929 SPRR4Q96PI1 79 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 149.5 ms