RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 C1orf134Q5TEV5 83 aa8.37□□□□□ -1.07
VPS13D-205ENST00000473099 LOC107984640A0A0U1RRK4 108 aa8.36□□□□□ -1.07
VPS13D-205ENST00000473099 TSPAN13O95857 204 aa8.36□□□□□ -1.07
VPS13D-205ENST00000473099 ALMS1Q8TCU4 4167 aa8.36□□□□□ -1.07
VPS13D-205ENST00000473099 A0A1W2PPM0 123 aa8.35□□□□□ -1.07
VPS13D-205ENST00000473099 SLPIP03973 132 aa8.35□□□□□ -1.07
VPS13D-205ENST00000473099 FABP2P12104 132 aa8.35□□□□□ -1.07
VPS13D-205ENST00000473099 RPL13AP40429 203 aaKnown RBP8.35□□□□□ -1.07
VPS13D-205ENST00000473099 WFDC2Q14508 124 aa8.35□□□□□ -1.07
VPS13D-205ENST00000473099 Q1RN00 199 aa8.35□□□□□ -1.07
VPS13D-205ENST00000473099 TRBV10-2A0A0K0K1G8 114 aa8.34□□□□□ -1.07
VPS13D-205ENST00000473099 RYR2Q92736 4967 aa8.34□□□□□ -1.07
VPS13D-205ENST00000473099 IGKV2-28A0A075B6P5 120 aa8.33□□□□□ -1.08
VPS13D-205ENST00000473099 IGKV2D-28P01615 120 aa8.33□□□□□ -1.08
VPS13D-205ENST00000473099 RPL18AQ02543 176 aaKnown RBP8.33□□□□□ -1.08
VPS13D-205ENST00000473099 VAMP3Q15836 100 aa8.33□□□□□ -1.08
VPS13D-205ENST00000473099 Q6ZRP5 223 aa8.33□□□□□ -1.08
VPS13D-205ENST00000473099 A0A087WTM6 91 aa8.32□□□□□ -1.08
VPS13D-205ENST00000473099 COX6CP09669 75 aa8.32□□□□□ -1.08
VPS13D-205ENST00000473099 PSMB2P49721 201 aa8.32□□□□□ -1.08
VPS13D-205ENST00000473099 GAGE2EQ4V326 116 aa8.32□□□□□ -1.08
VPS13D-205ENST00000473099 GTF2H5Q6ZYL4 71 aa8.32□□□□□ -1.08
VPS13D-205ENST00000473099 Q8N814 137 aa8.32□□□□□ -1.08
VPS13D-205ENST00000473099 GAGE2DQ9UEU5 116 aa8.32□□□□□ -1.08
VPS13D-205ENST00000473099 PLA2G2DQ9UNK4 145 aa8.32□□□□□ -1.08
VPS13D-205ENST00000473099 CBY1Q9Y3M2 126 aa8.32□□□□□ -1.08
VPS13D-205ENST00000473099 H7C2G1 150 aa8.31□□□□□ -1.08
VPS13D-205ENST00000473099 LINC00337Q8N6G1 96 aa8.31□□□□□ -1.08
VPS13D-205ENST00000473099 TMEM126AQ9H061 195 aa8.31□□□□□ -1.08
VPS13D-205ENST00000473099 XAGE1AQ9HD64 81 aa8.31□□□□□ -1.08
VPS13D-205ENST00000473099 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.3□□□□□ -1.08
VPS13D-205ENST00000473099 C9orf163Q8N9P6 203 aa8.3□□□□□ -1.08
VPS13D-205ENST00000473099 OR13C6PQ8NH95 151 aa8.3□□□□□ -1.08
VPS13D-205ENST00000473099 NAA38Q9BRA0 125 aaKnown RBP8.3□□□□□ -1.08
VPS13D-205ENST00000473099 TRBV20-1A0A075B6N2 111 aa8.29□□□□□ -1.08
VPS13D-205ENST00000473099 SCGB1C2P0DMR2 95 aa8.29□□□□□ -1.08
VPS13D-205ENST00000473099 S100A7L2Q5SY68 101 aa8.29□□□□□ -1.08
VPS13D-205ENST00000473099 SPCS1Q9Y6A9 102 aa8.29□□□□□ -1.08
VPS13D-205ENST00000473099 GAGE10A6NGK3 116 aa8.28□□□□□ -1.08
VPS13D-205ENST00000473099 C16orf90A8MZG2 172 aa8.28□□□□□ -1.08
VPS13D-205ENST00000473099 K7EP34 96 aa8.28□□□□□ -1.08
VPS13D-205ENST00000473099 M0R378 163 aa8.28□□□□□ -1.08
VPS13D-205ENST00000473099 VPREB1P12018 145 aa8.28□□□□□ -1.08
VPS13D-205ENST00000473099 RPL28P46779 137 aaKnown RBP8.28□□□□□ -1.08
VPS13D-205ENST00000473099 KMT2AQ03164 3969 aa8.28□□□□□ -1.08
VPS13D-205ENST00000473099 IGLV5-37A0A075B6J1 123 aa8.27□□□□□ -1.09
VPS13D-205ENST00000473099 NCR3O14931 201 aa8.27□□□□□ -1.09
VPS13D-205ENST00000473099 GAGE2BQ13066 116 aa8.27□□□□□ -1.09
VPS13D-205ENST00000473099 C9orf129Q5T035 196 aaKnown RBP8.27□□□□□ -1.09
VPS13D-205ENST00000473099 NKAPP1Q8N9T2 125 aa8.27□□□□□ -1.09
VPS13D-205ENST00000473099 LINC00474Q9P2X8 69 aa8.27□□□□□ -1.09
VPS13D-205ENST00000473099 SACSQ9NZJ4 4579 aa8.27□□□□□ -1.09
VPS13D-205ENST00000473099 TRIAP1O43715 76 aa8.26□□□□□ -1.09
VPS13D-205ENST00000473099 UBE2V1Q13404 147 aa8.26□□□□□ -1.09
VPS13D-205ENST00000473099 DNAH10Q8IVF4 4471 aa8.25□□□□□ -1.09
VPS13D-205ENST00000473099 IGLV6-57P01721 117 aa8.25□□□□□ -1.09
VPS13D-205ENST00000473099 PRR3P79522 188 aaKnown RBP8.25□□□□□ -1.09
VPS13D-205ENST00000473099 Q8NDZ9 215 aa8.25□□□□□ -1.09
VPS13D-205ENST00000473099 SMIM11BQ8TCY0 68 aa8.25□□□□□ -1.09
VPS13D-205ENST00000473099 A0A096LNI7 61 aa8.23□□□□□ -1.09
VPS13D-205ENST00000473099 H0YGX0 51 aa8.23□□□□□ -1.09
VPS13D-205ENST00000473099 RTL8CO15255 209 aa8.22□□□□□ -1.09
VPS13D-205ENST00000473099 ATXN8Q156A1 80 aa8.22□□□□□ -1.09
VPS13D-205ENST00000473099 EPPK1P58107 5090 aaKnown RBP8.22□□□□□ -1.09
VPS13D-205ENST00000473099 TRBV10-3A0A0K0K1G6 114 aa8.21□□□□□ -1.1
VPS13D-205ENST00000473099 TCL1BO95988 128 aa8.21□□□□□ -1.1
VPS13D-205ENST00000473099 TNP2Q05952 138 aa8.21□□□□□ -1.1
VPS13D-205ENST00000473099 SERTAD4-AS1Q5TG53 156 aa8.21□□□□□ -1.1
VPS13D-205ENST00000473099 SDIM1Q6ZPB5 146 aa8.21□□□□□ -1.1
VPS13D-205ENST00000473099 TRAV23DV6A0A075B6W5 121 aa8.2□□□□□ -1.1
VPS13D-205ENST00000473099 IGLV5-52A0A0A0MRZ9 124 aa8.2□□□□□ -1.1
VPS13D-205ENST00000473099 IGKV2-24A0A0C4DH68 120 aa8.2□□□□□ -1.1
VPS13D-205ENST00000473099 TRBV7-6A0A0J9YX20 115 aa8.19□□□□□ -1.1
VPS13D-205ENST00000473099 LST1O00453 97 aa8.19□□□□□ -1.1
VPS13D-205ENST00000473099 SNCGO76070 127 aa8.19□□□□□ -1.1
VPS13D-205ENST00000473099 A0A1B0GX51 115 aa8.18□□□□□ -1.1
VPS13D-205ENST00000473099 H3BMG7 143 aa8.18□□□□□ -1.1
VPS13D-205ENST00000473099 FAM19A5Q7Z5A7 132 aaPredicted RBP8.18□□□□□ -1.1
VPS13D-205ENST00000473099 MRPL55Q7Z7F7 128 aaKnown RBP8.18□□□□□ -1.1
VPS13D-205ENST00000473099 C7orf33Q8WU49 177 aa8.18□□□□□ -1.1
VPS13D-205ENST00000473099 DIRC1Q969H9 104 aa8.18□□□□□ -1.1
VPS13D-205ENST00000473099 C22orf24Q9Y442 160 aa8.18□□□□□ -1.1
VPS13D-205ENST00000473099 HYDINQ4G0P3 5121 aa8.18□□□□□ -1.1
VPS13D-205ENST00000473099 PRYO14603 147 aa8.17□□□□□ -1.1
VPS13D-205ENST00000473099 TRACP01848 142 aa8.17□□□□□ -1.1
VPS13D-205ENST00000473099 C6orf99Q4VX62 202 aa8.17□□□□□ -1.1
VPS13D-205ENST00000473099 LINC00336Q6ZUF6 198 aa8.17□□□□□ -1.1
VPS13D-205ENST00000473099 FAM168BA1KXE4 195 aa8.16□□□□□ -1.1
VPS13D-205ENST00000473099 F8W1H4 67 aa8.16□□□□□ -1.1
VPS13D-205ENST00000473099 M0QXV9 152 aa8.16□□□□□ -1.1
VPS13D-205ENST00000473099 ZNF73O43830 326 aaPredicted RBP8.16□□□□□ -1.1
VPS13D-205ENST00000473099 LINC01620Q4KN68 170 aa8.16□□□□□ -1.1
VPS13D-205ENST00000473099 CLEC2BQ92478 149 aa8.16□□□□□ -1.1
VPS13D-205ENST00000473099 KCNQ1DNQ9H478 68 aa8.16□□□□□ -1.1
VPS13D-205ENST00000473099 FRAS1Q86XX4 4008 aa8.16□□□□□ -1.1
VPS13D-205ENST00000473099 IGLV1-50A0A075B6I6 118 aa8.15□□□□□ -1.1
VPS13D-205ENST00000473099 SPACA4Q8TDM5 124 aa8.15□□□□□ -1.1
VPS13D-205ENST00000473099 LINC00167Q96N53 147 aa8.15□□□□□ -1.1
VPS13D-205ENST00000473099 BIRC6Q9NR09 4857 aa8.15□□□□□ -1.11
VPS13D-205ENST00000473099 DNAH2Q9P225 4427 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms