RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 A0A0U1RRA0 63 aa9.28□□□□□ -0.92
CCDC88B-205ENST00000472524 TMEM223A0PJW6 202 aa9.28□□□□□ -0.92
CCDC88B-205ENST00000472524 TMEM238C9JI98 176 aa9.28□□□□□ -0.92
CCDC88B-205ENST00000472524 TSPAN13O95857 204 aa9.28□□□□□ -0.92
CCDC88B-205ENST00000472524 LINC00158P58513 81 aa9.28□□□□□ -0.92
CCDC88B-205ENST00000472524 PRLHP81277 87 aa9.28□□□□□ -0.92
CCDC88B-205ENST00000472524 TYMSOSQ8TAI1 123 aa9.28□□□□□ -0.92
CCDC88B-205ENST00000472524 MUC2Q02817 5179 aa9.27□□□□□ -0.93
CCDC88B-205ENST00000472524 HSBP1O75506 76 aa9.27□□□□□ -0.93
CCDC88B-205ENST00000472524 FAM19A1Q7Z5A9 133 aa9.27□□□□□ -0.93
CCDC88B-205ENST00000472524 FAM19A2Q8N3H0 131 aa9.27□□□□□ -0.93
CCDC88B-205ENST00000472524 TMEM126AQ9H061 195 aa9.27□□□□□ -0.93
CCDC88B-205ENST00000472524 H0Y8G0 127 aa9.25□□□□□ -0.93
CCDC88B-205ENST00000472524 M0R378 163 aa9.24□□□□□ -0.93
CCDC88B-205ENST00000472524 TRGC2P03986 189 aa9.23□□□□□ -0.93
CCDC88B-205ENST00000472524 SMIM13P0DJ93 91 aa9.23□□□□□ -0.93
CCDC88B-205ENST00000472524 KRTAP13-2Q52LG2 175 aa9.23□□□□□ -0.93
CCDC88B-205ENST00000472524 MEIG1Q5JSS6 88 aa9.23□□□□□ -0.93
CCDC88B-205ENST00000472524 ATP6V1G1O75348 118 aa9.22□□□□□ -0.93
CCDC88B-205ENST00000472524 FAM229BQ4G0N7 80 aa9.21□□□□□ -0.94
CCDC88B-205ENST00000472524 IGKV2D-26A0A0A0MRZ7 120 aa9.19□□□□□ -0.94
CCDC88B-205ENST00000472524 NCR3O14931 201 aa9.19□□□□□ -0.94
CCDC88B-205ENST00000472524 SERF1AO75920 110 aa9.19□□□□□ -0.94
CCDC88B-205ENST00000472524 LEPROTL1O95214 131 aa9.19□□□□□ -0.94
CCDC88B-205ENST00000472524 HERV-K104P63124 156 aa9.19□□□□□ -0.94
CCDC88B-205ENST00000472524 BOD1L2Q8IYS8 172 aa9.19□□□□□ -0.94
CCDC88B-205ENST00000472524 MIR7-3HGQ8N6C7 128 aa9.19□□□□□ -0.94
CCDC88B-205ENST00000472524 HIGD2AQ9BW72 106 aa9.19□□□□□ -0.94
CCDC88B-205ENST00000472524 NDUFA12Q9UI09 145 aa9.19□□□□□ -0.94
CCDC88B-205ENST00000472524 LINC00310P59036 64 aa9.18□□□□□ -0.94
CCDC88B-205ENST00000472524 LINC00304Q8N9R0 145 aa9.17□□□□□ -0.94
CCDC88B-205ENST00000472524 PLEKHB2Q96CS7 222 aa9.17□□□□□ -0.94
CCDC88B-205ENST00000472524 MYMXA0A1B0GTQ4 84 aa9.16□□□□□ -0.94
CCDC88B-205ENST00000472524 TSPEAR-AS2P59090 65 aa9.16□□□□□ -0.94
CCDC88B-205ENST00000472524 LINC00587B1AMM8 73 aa9.15□□□□□ -0.94
CCDC88B-205ENST00000472524 PRYO14603 147 aa9.15□□□□□ -0.94
CCDC88B-205ENST00000472524 FABP4P15090 132 aa9.15□□□□□ -0.94
CCDC88B-205ENST00000472524 LEPROTO15243 131 aa9.14□□□□□ -0.95
CCDC88B-205ENST00000472524 C3orf22Q8N5N4 141 aa9.14□□□□□ -0.95
CCDC88B-205ENST00000472524 RETNLBQ9BQ08 111 aa9.14□□□□□ -0.95
CCDC88B-205ENST00000472524 PMCHL2Q9BQD1 86 aa9.14□□□□□ -0.95
CCDC88B-205ENST00000472524 MAP1LC3CQ9BXW4 147 aa9.14□□□□□ -0.95
CCDC88B-205ENST00000472524 HSPB8Q9UJY1 196 aa9.14□□□□□ -0.95
CCDC88B-205ENST00000472524 PLNP26678 52 aa9.13□□□□□ -0.95
CCDC88B-205ENST00000472524 DAND5Q8N907 189 aa9.13□□□□□ -0.95
CCDC88B-205ENST00000472524 DPM2O94777 84 aa9.12□□□□□ -0.95
CCDC88B-205ENST00000472524 SPRR4Q96PI1 79 aa9.12□□□□□ -0.95
CCDC88B-205ENST00000472524 TRBV10-3A0A0K0K1G6 114 aa9.11□□□□□ -0.95
CCDC88B-205ENST00000472524 J3QQQ9 107 aa9.11□□□□□ -0.95
CCDC88B-205ENST00000472524 HERVK_113P61574 105 aa9.11□□□□□ -0.95
CCDC88B-205ENST00000472524 ETDCA0A1B0GVM5 59 aa9.1□□□□□ -0.95
CCDC88B-205ENST00000472524 COLCA2A8K830 154 aa9.1□□□□□ -0.95
CCDC88B-205ENST00000472524 IGKCP01834 107 aa9.1□□□□□ -0.95
CCDC88B-205ENST00000472524 S100A1P23297 94 aa9.1□□□□□ -0.95
CCDC88B-205ENST00000472524 LINC00337Q8N6G1 96 aa9.1□□□□□ -0.95
CCDC88B-205ENST00000472524 KCNQ1DNQ9H478 68 aa9.1□□□□□ -0.95
CCDC88B-205ENST00000472524 LGALS3P17931 250 aaKnown RBP9.09□□□□□ -0.95
CCDC88B-205ENST00000472524 SPRR1AP35321 89 aa9.09□□□□□ -0.95
CCDC88B-205ENST00000472524 ZNF706Q9Y5V0 76 aaPredicted RBP9.09□□□□□ -0.95
CCDC88B-205ENST00000472524 A0A0U1RQV1 116 aa9.08□□□□□ -0.96
CCDC88B-205ENST00000472524 KRTAP4-16G5E9R7 235 aaPredicted RBP9.07□□□□□ -0.96
CCDC88B-205ENST00000472524 S100A12P80511 92 aa9.07□□□□□ -0.96
CCDC88B-205ENST00000472524 SMCR5Q8TEV8 140 aa9.07□□□□□ -0.96
CCDC88B-205ENST00000472524 MIEN1Q9BRT3 115 aa9.07□□□□□ -0.96
CCDC88B-205ENST00000472524 KRTAP9-2Q9BYQ4 174 aa9.07□□□□□ -0.96
CCDC88B-205ENST00000472524 NMUP48645 174 aa9.06□□□□□ -0.96
CCDC88B-205ENST00000472524 PPDPFQ9H3Y8 114 aa9.06□□□□□ -0.96
CCDC88B-205ENST00000472524 DDTP30046 118 aa9.05□□□□□ -0.96
CCDC88B-205ENST00000472524 LOC107984156A0A0G2JMH3 177 aa9.04□□□□□ -0.96
CCDC88B-205ENST00000472524 ARL17AQ8IVW1 177 aa9.04□□□□□ -0.96
CCDC88B-205ENST00000472524 FAT4Q6V0I7 4981 aa9.03□□□□□ -0.96
CCDC88B-205ENST00000472524 TRBV10-2A0A0K0K1G8 114 aa9.03□□□□□ -0.96
CCDC88B-205ENST00000472524 B5MCH6 92 aa9.03□□□□□ -0.96
CCDC88B-205ENST00000472524 NPC2P61916 151 aa9.03□□□□□ -0.96
CCDC88B-205ENST00000472524 SPANXB1Q9NS25 103 aaPredicted RBP9.03□□□□□ -0.96
CCDC88B-205ENST00000472524 IGLV7-46A0A075B6I9 117 aa9.02□□□□□ -0.97
CCDC88B-205ENST00000472524 CTAG1AP78358 180 aa9.02□□□□□ -0.97
CCDC88B-205ENST00000472524 C4orf48Q5BLP8 95 aa9.02□□□□□ -0.97
CCDC88B-205ENST00000472524 LCE2AQ5TA79 106 aaPredicted RBP9.02□□□□□ -0.97
CCDC88B-205ENST00000472524 SPAG11AQ6PDA7 123 aa9.02□□□□□ -0.97
CCDC88B-205ENST00000472524 A0A0J9YXY3 114 aa9.01□□□□□ -0.97
CCDC88B-205ENST00000472524 E9PLD3 99 aa9.01□□□□□ -0.97
CCDC88B-205ENST00000472524 S100A7L2Q5SY68 101 aa9.01□□□□□ -0.97
CCDC88B-205ENST00000472524 GAGE2AQ6NT46 116 aa9.01□□□□□ -0.97
CCDC88B-205ENST00000472524 Q8NBF4 154 aa9.01□□□□□ -0.97
CCDC88B-205ENST00000472524 MUC17Q685J3 4493 aa9□□□□□ -0.97
CCDC88B-205ENST00000472524 HIST1H2BKO60814 126 aa9□□□□□ -0.97
CCDC88B-205ENST00000472524 ERC2-IT1O76042 136 aa9□□□□□ -0.97
CCDC88B-205ENST00000472524 NDUFC2O95298 119 aa9□□□□□ -0.97
CCDC88B-205ENST00000472524 HIST1H2BJP06899 126 aa9□□□□□ -0.97
CCDC88B-205ENST00000472524 HIST1H2BOP23527 126 aa9□□□□□ -0.97
CCDC88B-205ENST00000472524 HIST1H2BBP33778 126 aa9□□□□□ -0.97
CCDC88B-205ENST00000472524 HIST1H2BDP58876 126 aa9□□□□□ -0.97
CCDC88B-205ENST00000472524 HIST1H2BCP62807 126 aa9□□□□□ -0.97
CCDC88B-205ENST00000472524 HIST2H2BEQ16778 126 aa9□□□□□ -0.97
CCDC88B-205ENST00000472524 HIST2H2BFQ5QNW6 126 aaPredicted RBP9□□□□□ -0.97
CCDC88B-205ENST00000472524 SOSTDC1Q6X4U4 206 aa9□□□□□ -0.97
CCDC88B-205ENST00000472524 HIST1H2BHQ93079 126 aa9□□□□□ -0.97
CCDC88B-205ENST00000472524 HIST1H2BNQ99877 126 aa9□□□□□ -0.97
CCDC88B-205ENST00000472524 HIST1H2BMQ99879 126 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms