RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-209ENST00000472044 ABCC10Q5T3U5 1492 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 FANCD2Q9BXW9 1451 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 CD163L1Q9NR16 1453 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 ARHGAP35Q9NRY4 1499 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 MBD5Q9P267 1494 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 SPEF2Q9C093 1822 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 LOC400499M0QZD8 3231 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 FXYD6-FXYD2A0A087WZ82 144 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 A0A0G2JND7 137 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 LCE6AA0A183 80 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 LOC100130705A0A1B0GUX0 176 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 ZNF815PA8K554 130 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 TMEM14DPA8MWL7 114 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 F2Z2F3 143 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 ZNF670-ZNF695F2Z2N8 137 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 LYNX1G3V0Z9 82 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 PDCD5O14737 125 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 MRPL33O75394 65 aaKnown RBP0.11□□□□□ -2.39
PTCD3-209ENST00000472044 SNCGO76070 127 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 CYB5AP00167 134 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 CFDP00746 253 aaPredicted RBP0.11□□□□□ -2.39
PTCD3-209ENST00000472044 MGPP08493 103 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 SPINK8P0C7L1 97 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 C3orf79P0CE67 100 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 IGLC1P0CG04 106 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 LINC00694P0DN24 101 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 CCL3L1P16619 93 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 EDDM3BP56851 147 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 NPC2P61916 151 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 RPL38P63173 70 aaKnown RBP0.11□□□□□ -2.39
PTCD3-209ENST00000472044 S100A7L2Q5SY68 101 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 TMEM170BQ5T4T1 132 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 C9orf153Q5TBE3 101 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 Q5VSD8 79 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 CFAP126Q5VTH2 177 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 ZNF720Q7Z2F6 126 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 C6orf201Q7Z4U5 140 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 SVBPQ8N300 66 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 DEFB123Q8N688 67 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 SERP2Q8N6R1 65 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 C18orf32Q8TCD1 76 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 SMIM11BQ8TCY0 68 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 TMEM263Q8WUH6 116 aaKnown RBP0.11□□□□□ -2.39
PTCD3-209ENST00000472044 S100ZQ8WXG8 99 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 IFI27L1Q96BM0 104 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 C14orf144Q96I85 54 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 USMG5Q96IX5 58 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 WFDC6Q9BQY6 131 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 VAMP8Q9BV40 100 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 DPH3P1Q9H4G8 78 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 Q9H521 79 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 ST20Q9HBF5 79 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 CDC42SE2Q9NRR3 84 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 FAIMQ9NVQ4 179 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 UQCR10Q9UDW1 63 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 GNG8Q9UK08 70 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 LINC00312Q9Y6C7 94 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 LINC01558Q9Y6Z2 57 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 R4GMQ9 66 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 ARL2-SNX15V9GYD0 113 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 ADCY10Q96PN6 1610 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 MAP3K4Q9Y6R4 1608 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 TRPM2O94759 1503 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 HMGXB3Q12766 1538 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 ARHGAP5Q13017 1502 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 URB2Q14146 1524 aaKnown RBP0.11□□□□□ -2.39
PTCD3-209ENST00000472044 MAGI3Q5TCQ9 1506 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 LRRC7Q96NW7 1537 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 TULP4Q9NRJ4 1543 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 DNAH17Q9UFH2 4485 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 HSPG2P98160 4391 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 MYOM1P52179 1685 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 CDH23Q9H251 3354 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 ERCC6L2Q5T890 1561 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 INO80Q9ULG1 1556 aaPredicted RBP0.11□□□□□ -2.39
PTCD3-209ENST00000472044 CEP170BQ9Y4F5 1589 aaPredicted RBP0.11□□□□□ -2.39
PTCD3-209ENST00000472044 SPEGQ15772 3267 aa0.11□□□□□ -2.39
PTCD3-209ENST00000472044 PHIPQ8WWQ0 1821 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 PZPP20742 1482 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 ATP7BP35670 1465 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 ERVK-7P63135 1459 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 MLH3Q9UHC1 1453 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 A0A0G2JMZ2 1700 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 LRRC37AA6NMS7 1700 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 SPHKAPQ2M3C7 1700 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 KIAA1551Q9HCM1 1747 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 MARF1Q9Y4F3 1742 aaKnown RBP0.1□□□□□ -2.39
PTCD3-209ENST00000472044 VCANP13611 3396 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 SHROOM2Q13796 1616 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 RNF17Q9BXT8 1623 aaKnown RBP0.1□□□□□ -2.39
PTCD3-209ENST00000472044 CC2D2AQ9P2K1 1620 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 LRP1Q07954 4544 aaKnown RBP0.1□□□□□ -2.39
PTCD3-209ENST00000472044 DCHS1Q96JQ0 3298 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 PPLO60437 1756 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 EFCAB5A4FU69 1503 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 EHBP1L1Q8N3D4 1523 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 KIAA0586Q9BVV6 1533 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 SYCP2Q9BX26 1530 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 DEFB131BA0A096LNP1 70 aa0.1□□□□□ -2.39
PTCD3-209ENST00000472044 UQCRHLA0A096LP55 91 aa0.1□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 173.4 ms