RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 BAGE3Q86Y29 109 aa10.16□□□□□ -0.78
COL7A1-208ENST00000470076 PMCHL1Q16048 86 aa10.15□□□□□ -0.78
COL7A1-208ENST00000470076 PLEKHB2Q96CS7 222 aa10.14□□□□□ -0.79
COL7A1-208ENST00000470076 RETNLBQ9BQ08 111 aa10.14□□□□□ -0.79
COL7A1-208ENST00000470076 CBLN2Q8IUK8 224 aa10.13□□□□□ -0.79
COL7A1-208ENST00000470076 Q8NDZ9 215 aa10.13□□□□□ -0.79
COL7A1-208ENST00000470076 LINC00158P58513 81 aa10.11□□□□□ -0.79
COL7A1-208ENST00000470076 CHTOPQ9Y3Y2 248 aaKnown RBP10.11□□□□□ -0.79
COL7A1-208ENST00000470076 TPRXLQ17RH7 258 aa10.1□□□□□ -0.79
COL7A1-208ENST00000470076 HIGD2AQ9BW72 106 aa10.1□□□□□ -0.79
COL7A1-208ENST00000470076 CDIP1Q9H305 208 aa10.09□□□□□ -0.79
COL7A1-208ENST00000470076 IGLV7-46A0A075B6I9 117 aa10.08□□□□□ -0.8
COL7A1-208ENST00000470076 TMEM223A0PJW6 202 aa10.07□□□□□ -0.8
COL7A1-208ENST00000470076 C3orf22Q8N5N4 141 aa10.07□□□□□ -0.8
COL7A1-208ENST00000470076 TRAV12-1A0A0B4J245 112 aa10.06□□□□□ -0.8
COL7A1-208ENST00000470076 A0A0U1RRA0 63 aa10.06□□□□□ -0.8
COL7A1-208ENST00000470076 SPAG11AQ6PDA7 123 aa10.06□□□□□ -0.8
COL7A1-208ENST00000470076 SPRR4Q96PI1 79 aa10.06□□□□□ -0.8
COL7A1-208ENST00000470076 ATP6V1G1O75348 118 aa10.05□□□□□ -0.8
COL7A1-208ENST00000470076 ZNF706Q9Y5V0 76 aaPredicted RBP10.05□□□□□ -0.8
COL7A1-208ENST00000470076 APOC3P02656 99 aa10.04□□□□□ -0.8
COL7A1-208ENST00000470076 IFI27L1Q96BM0 104 aa10.04□□□□□ -0.8
COL7A1-208ENST00000470076 CHCHD1Q96BP2 118 aaKnown RBP10.04□□□□□ -0.8
COL7A1-208ENST00000470076 FAT4Q6V0I7 4981 aa10.04□□□□□ -0.8
COL7A1-208ENST00000470076 PRYO14603 147 aa10.03□□□□□ -0.8
COL7A1-208ENST00000470076 SNAPINO95295 136 aa10.03□□□□□ -0.8
COL7A1-208ENST00000470076 SMIM13P0DJ93 91 aa10.03□□□□□ -0.8
COL7A1-208ENST00000470076 BOD1L2Q8IYS8 172 aa10.03□□□□□ -0.8
COL7A1-208ENST00000470076 MUC17Q685J3 4493 aa10.02□□□□□ -0.81
COL7A1-208ENST00000470076 HERV-K104P63124 156 aa10.02□□□□□ -0.81
COL7A1-208ENST00000470076 NDUFA5Q16718 116 aa10.02□□□□□ -0.81
COL7A1-208ENST00000470076 MEIG1Q5JSS6 88 aa10.02□□□□□ -0.81
COL7A1-208ENST00000470076 SVBPQ8N300 66 aa10.02□□□□□ -0.81
COL7A1-208ENST00000470076 LINC00337Q8N6G1 96 aa10.01□□□□□ -0.81
COL7A1-208ENST00000470076 PPDPFQ9H3Y8 114 aa10.01□□□□□ -0.81
COL7A1-208ENST00000470076 LINC00587B1AMM8 73 aa10□□□□□ -0.81
COL7A1-208ENST00000470076 SPRR1AP35321 89 aa10□□□□□ -0.81
COL7A1-208ENST00000470076 C4orf48Q5BLP8 95 aa10□□□□□ -0.81
COL7A1-208ENST00000470076 LCE2AQ5TA79 106 aaPredicted RBP10□□□□□ -0.81
COL7A1-208ENST00000470076 MIR7-3HGQ8N6C7 128 aa10□□□□□ -0.81
COL7A1-208ENST00000470076 KCNQ1DNQ9H478 68 aa10□□□□□ -0.81
COL7A1-208ENST00000470076 NCR3O14931 201 aa9.98□□□□□ -0.81
COL7A1-208ENST00000470076 FP248Q71RG6 208 aaPredicted RBP9.98□□□□□ -0.81
COL7A1-208ENST00000470076 ETDCA0A1B0GVM5 59 aa9.97□□□□□ -0.81
COL7A1-208ENST00000470076 SMCR5Q8TEV8 140 aa9.97□□□□□ -0.81
COL7A1-208ENST00000470076 YPEL4Q96NS1 127 aa9.97□□□□□ -0.81
COL7A1-208ENST00000470076 MAP1LC3CQ9BXW4 147 aa9.97□□□□□ -0.81
COL7A1-208ENST00000470076 NDUFA12Q9UI09 145 aa9.97□□□□□ -0.81
COL7A1-208ENST00000470076 MYMXA0A1B0GTQ4 84 aa9.96□□□□□ -0.82
COL7A1-208ENST00000470076 KRTAP4-16G5E9R7 235 aaPredicted RBP9.96□□□□□ -0.82
COL7A1-208ENST00000470076 HSBP1O75506 76 aa9.96□□□□□ -0.82
COL7A1-208ENST00000470076 S100A12P80511 92 aa9.96□□□□□ -0.82
COL7A1-208ENST00000470076 TRBV10-3A0A0K0K1G6 114 aa9.95□□□□□ -0.82
COL7A1-208ENST00000470076 Q8NBF4 154 aa9.95□□□□□ -0.82
COL7A1-208ENST00000470076 FAM19A2Q8N3H0 131 aa9.94□□□□□ -0.82
COL7A1-208ENST00000470076 DAND5Q8N907 189 aa9.94□□□□□ -0.82
COL7A1-208ENST00000470076 KRTAP9-2Q9BYQ4 174 aa9.94□□□□□ -0.82
COL7A1-208ENST00000470076 SPINK1P00995 79 aa9.93□□□□□ -0.82
COL7A1-208ENST00000470076 LINC00483Q53H64 154 aa9.92□□□□□ -0.82
COL7A1-208ENST00000470076 LOC107984156A0A0G2JMH3 177 aa9.91□□□□□ -0.82
COL7A1-208ENST00000470076 ARL17AQ8IVW1 177 aa9.91□□□□□ -0.82
COL7A1-208ENST00000470076 B5MCH6 92 aa9.9□□□□□ -0.82
COL7A1-208ENST00000470076 H0Y8G0 127 aa9.9□□□□□ -0.82
COL7A1-208ENST00000470076 TRBV10-2A0A0K0K1G8 114 aa9.89□□□□□ -0.83
COL7A1-208ENST00000470076 LEPROTO15243 131 aa9.89□□□□□ -0.83
COL7A1-208ENST00000470076 TSPEAR-AS2P59090 65 aa9.89□□□□□ -0.83
COL7A1-208ENST00000470076 KRTAP13-3Q3SY46 172 aa9.89□□□□□ -0.83
COL7A1-208ENST00000470076 GAGE2AQ6NT46 116 aa9.89□□□□□ -0.83
COL7A1-208ENST00000470076 LEPROTL1O95214 131 aa9.88□□□□□ -0.83
COL7A1-208ENST00000470076 PLNP26678 52 aa9.88□□□□□ -0.83
COL7A1-208ENST00000470076 DDTP30046 118 aa9.88□□□□□ -0.83
COL7A1-208ENST00000470076 J3QQQ9 107 aa9.86□□□□□ -0.83
COL7A1-208ENST00000470076 SSBP3-AS1Q7Z2R9 100 aa9.86□□□□□ -0.83
COL7A1-208ENST00000470076 MIEN1Q9BRT3 115 aa9.86□□□□□ -0.83
COL7A1-208ENST00000470076 SPANXB1Q9NS25 103 aaPredicted RBP9.86□□□□□ -0.83
COL7A1-208ENST00000470076 ERC2-IT1O76042 136 aa9.85□□□□□ -0.83
COL7A1-208ENST00000470076 NMUP48645 174 aa9.85□□□□□ -0.83
COL7A1-208ENST00000470076 HERVK_113P61574 105 aa9.85□□□□□ -0.83
COL7A1-208ENST00000470076 RPS29P62273 56 aaKnown RBP9.85□□□□□ -0.83
COL7A1-208ENST00000470076 MOBPQ13875 183 aa9.85□□□□□ -0.83
COL7A1-208ENST00000470076 Q6ZRX8 168 aa9.85□□□□□ -0.83
COL7A1-208ENST00000470076 IGLV9-49A0A0B4J1Y8 123 aa9.84□□□□□ -0.83
COL7A1-208ENST00000470076 SERF1AO75920 110 aa9.84□□□□□ -0.83
COL7A1-208ENST00000470076 TRGC2P03986 189 aa9.84□□□□□ -0.83
COL7A1-208ENST00000470076 ASB16-AS1Q495Z4 193 aa9.84□□□□□ -0.83
COL7A1-208ENST00000470076 SLC7A5P1Q8MH63 180 aa9.84□□□□□ -0.83
COL7A1-208ENST00000470076 Q9BRP9 147 aa9.84□□□□□ -0.83
COL7A1-208ENST00000470076 DPM2O94777 84 aa9.83□□□□□ -0.84
COL7A1-208ENST00000470076 NDUFC2O95298 119 aa9.83□□□□□ -0.84
COL7A1-208ENST00000470076 LINC00310P59036 64 aa9.83□□□□□ -0.84
COL7A1-208ENST00000470076 HSPB8Q9UJY1 196 aa9.83□□□□□ -0.84
COL7A1-208ENST00000470076 IGLV6-57P01721 117 aa9.82□□□□□ -0.84
COL7A1-208ENST00000470076 LGALS3P17931 250 aaKnown RBP9.82□□□□□ -0.84
COL7A1-208ENST00000470076 S100A7L2Q5SY68 101 aa9.82□□□□□ -0.84
COL7A1-208ENST00000470076 JOSD1Q15040 202 aaPredicted RBP9.81□□□□□ -0.84
COL7A1-208ENST00000470076 Q8N377 158 aa9.81□□□□□ -0.84
COL7A1-208ENST00000470076 IGKCP01834 107 aa9.8□□□□□ -0.84
COL7A1-208ENST00000470076 TRAV23DV6A0A075B6W5 121 aa9.79□□□□□ -0.84
COL7A1-208ENST00000470076 SLC25A20O43772 301 aa9.79□□□□□ -0.84
COL7A1-208ENST00000470076 FABP4P15090 132 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms