RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 TENM3Q9P273 2699 aa3.82□□□□□ -1.8
SYNE1-219ENST00000469439 IGKV2D-26A0A0A0MRZ7 120 aa3.82□□□□□ -1.8
SYNE1-219ENST00000469439 TRAV13-2A0A0B4J235 113 aa3.82□□□□□ -1.8
SYNE1-219ENST00000469439 HIGD2BQ4VC39 106 aa3.82□□□□□ -1.8
SYNE1-219ENST00000469439 LYRM7Q5U5X0 104 aa3.82□□□□□ -1.8
SYNE1-219ENST00000469439 PCP2Q8IVA1 136 aa3.82□□□□□ -1.8
SYNE1-219ENST00000469439 Q8N814 137 aa3.82□□□□□ -1.8
SYNE1-219ENST00000469439 C15orf56Q8N910 161 aa3.82□□□□□ -1.8
SYNE1-219ENST00000469439 CMYA5Q8N3K9 4069 aa3.82□□□□□ -1.8
SYNE1-219ENST00000469439 A0A087WTM6 91 aa3.81□□□□□ -1.8
SYNE1-219ENST00000469439 LOC107984156A0A0G2JMH3 177 aa3.81□□□□□ -1.8
SYNE1-219ENST00000469439 NDUFC2O95298 119 aa3.81□□□□□ -1.8
SYNE1-219ENST00000469439 PFN2P35080 140 aa3.81□□□□□ -1.8
SYNE1-219ENST00000469439 HINT1P49773 126 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-219ENST00000469439 MAJINQ3KP22 176 aa3.81□□□□□ -1.8
SYNE1-219ENST00000469439 UNQ6190/PRO20217Q6UXQ8 127 aa3.81□□□□□ -1.8
SYNE1-219ENST00000469439 ARL17AQ8IVW1 177 aa3.81□□□□□ -1.8
SYNE1-219ENST00000469439 CEND1Q8N111 149 aa3.81□□□□□ -1.8
SYNE1-219ENST00000469439 C9orf163Q8N9P6 203 aa3.81□□□□□ -1.8
SYNE1-219ENST00000469439 DPH3Q96FX2 82 aa3.81□□□□□ -1.8
SYNE1-219ENST00000469439 IGLV5-52A0A0A0MRZ9 124 aa3.8□□□□□ -1.8
SYNE1-219ENST00000469439 TRBV10-2A0A0K0K1G8 114 aa3.8□□□□□ -1.8
SYNE1-219ENST00000469439 LRCOL1A6NCL2 159 aa3.8□□□□□ -1.8
SYNE1-219ENST00000469439 GAGE10A6NGK3 116 aa3.8□□□□□ -1.8
SYNE1-219ENST00000469439 C16orf90A8MZG2 172 aa3.8□□□□□ -1.8
SYNE1-219ENST00000469439 COX6CP09669 75 aa3.8□□□□□ -1.8
SYNE1-219ENST00000469439 SMIM13P0DJ93 91 aa3.8□□□□□ -1.8
SYNE1-219ENST00000469439 RPL18AQ02543 176 aaKnown RBP3.8□□□□□ -1.8
SYNE1-219ENST00000469439 Q6ZRN7 208 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-219ENST00000469439 Q6ZRU5 148 aa3.8□□□□□ -1.8
SYNE1-219ENST00000469439 MIR7-3HGQ8N6C7 128 aa3.8□□□□□ -1.8
SYNE1-219ENST00000469439 NKAPP1Q8N9T2 125 aa3.8□□□□□ -1.8
SYNE1-219ENST00000469439 RAB37Q96AX2 223 aa3.8□□□□□ -1.8
SYNE1-219ENST00000469439 PRO1933Q9H354 126 aa3.8□□□□□ -1.8
SYNE1-219ENST00000469439 TSPEAR-AS2P59090 65 aa3.79□□□□□ -1.8
SYNE1-219ENST00000469439 CTAG1AP78358 180 aa3.79□□□□□ -1.8
SYNE1-219ENST00000469439 VAMP3Q15836 100 aa3.79□□□□□ -1.8
SYNE1-219ENST00000469439 COL5A1-AS1Q5SY13 56 aa3.79□□□□□ -1.8
SYNE1-219ENST00000469439 C2orf82Q6UX34 121 aa3.79□□□□□ -1.8
SYNE1-219ENST00000469439 MAPKAPK5-AS1Q8N8E1 139 aa3.79□□□□□ -1.8
SYNE1-219ENST00000469439 LINC00308Q8TCZ7 52 aa3.79□□□□□ -1.8
SYNE1-219ENST00000469439 TMEM126AQ9H061 195 aa3.79□□□□□ -1.8
SYNE1-219ENST00000469439 SND1-IT1Q9HBX3 110 aa3.79□□□□□ -1.8
SYNE1-219ENST00000469439 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.78□□□□□ -1.8
SYNE1-219ENST00000469439 A0A0B4J2C4 111 aa3.78□□□□□ -1.8
SYNE1-219ENST00000469439 LECT2O14960 151 aa3.78□□□□□ -1.8
SYNE1-219ENST00000469439 S100A7L2Q5SY68 101 aa3.78□□□□□ -1.8
SYNE1-219ENST00000469439 SERTAD4-AS1Q5TG53 156 aa3.78□□□□□ -1.8
SYNE1-219ENST00000469439 C6orf48Q9UBA6 75 aa3.78□□□□□ -1.8
SYNE1-219ENST00000469439 COL7A1Q02388 2944 aa3.77□□□□□ -1.81
SYNE1-219ENST00000469439 PCP4L1A6NKN8 68 aa3.77□□□□□ -1.81
SYNE1-219ENST00000469439 M0R378 163 aa3.77□□□□□ -1.81
SYNE1-219ENST00000469439 RTL8CO15255 209 aa3.77□□□□□ -1.81
SYNE1-219ENST00000469439 GAGE2BQ13066 116 aa3.77□□□□□ -1.81
SYNE1-219ENST00000469439 GAGE2EQ4V326 116 aa3.77□□□□□ -1.81
SYNE1-219ENST00000469439 MUSTN1Q8IVN3 82 aa3.77□□□□□ -1.81
SYNE1-219ENST00000469439 GAGE2DQ9UEU5 116 aa3.77□□□□□ -1.81
SYNE1-219ENST00000469439 PRO1854Q9UHT4 67 aa3.77□□□□□ -1.81
SYNE1-219ENST00000469439 A0A0U1RRA0 63 aa3.76□□□□□ -1.81
SYNE1-219ENST00000469439 A4D1N5 150 aa3.76□□□□□ -1.81
SYNE1-219ENST00000469439 H3BQ85 93 aa3.76□□□□□ -1.81
SYNE1-219ENST00000469439 BVES-AS1Q5T3Y7 98 aa3.76□□□□□ -1.81
SYNE1-219ENST00000469439 C2orf91Q6ZV80 131 aa3.76□□□□□ -1.81
SYNE1-219ENST00000469439 OR13C6PQ8NH95 151 aa3.76□□□□□ -1.81
SYNE1-219ENST00000469439 LITAFQ99732 161 aa3.76□□□□□ -1.81
SYNE1-219ENST00000469439 TTTY13Q9BZ97 58 aa3.76□□□□□ -1.81
SYNE1-219ENST00000469439 NHP2Q9NX24 153 aaKnown RBP3.76□□□□□ -1.81
SYNE1-219ENST00000469439 HUWE1Q7Z6Z7 4374 aaKnown RBP3.75□□□□□ -1.81
SYNE1-219ENST00000469439 IGLV5-37A0A075B6J1 123 aa3.75□□□□□ -1.81
SYNE1-219ENST00000469439 H0YGX0 51 aa3.75□□□□□ -1.81
SYNE1-219ENST00000469439 SLC25A20O43772 301 aa3.75□□□□□ -1.81
SYNE1-219ENST00000469439 Q1RN00 199 aa3.75□□□□□ -1.81
SYNE1-219ENST00000469439 SDIM1Q6ZPB5 146 aa3.75□□□□□ -1.81
SYNE1-219ENST00000469439 Q6ZRP5 223 aa3.75□□□□□ -1.81
SYNE1-219ENST00000469439 C7orf33Q8WU49 177 aa3.75□□□□□ -1.81
SYNE1-219ENST00000469439 LINC00526Q96FQ7 95 aa3.75□□□□□ -1.81
SYNE1-219ENST00000469439 TRBV20-1A0A075B6N2 111 aa3.74□□□□□ -1.81
SYNE1-219ENST00000469439 TRBV7-6A0A0J9YX20 115 aa3.74□□□□□ -1.81
SYNE1-219ENST00000469439 A0A1B0GWB2 263 aa3.74□□□□□ -1.81
SYNE1-219ENST00000469439 PSMB2P49721 201 aa3.74□□□□□ -1.81
SYNE1-219ENST00000469439 BATFQ16520 125 aa3.74□□□□□ -1.81
SYNE1-219ENST00000469439 C9orf116Q5BN46 136 aaPredicted RBP3.74□□□□□ -1.81
SYNE1-219ENST00000469439 ADAMTSL4-AS1Q5T5F5 129 aa3.74□□□□□ -1.81
SYNE1-219ENST00000469439 PRR26Q8N8Z3 221 aa3.74□□□□□ -1.81
SYNE1-219ENST00000469439 A0A1B0GX51 115 aa3.73□□□□□ -1.81
SYNE1-219ENST00000469439 CFC1BP0CG36 223 aa3.73□□□□□ -1.81
SYNE1-219ENST00000469439 CFC1P0CG37 223 aa3.73□□□□□ -1.81
SYNE1-219ENST00000469439 SCGB1C2P0DMR2 95 aa3.73□□□□□ -1.81
SYNE1-219ENST00000469439 UBE2BP63146 152 aa3.73□□□□□ -1.81
SYNE1-219ENST00000469439 MRPL55Q7Z7F7 128 aaKnown RBP3.73□□□□□ -1.81
SYNE1-219ENST00000469439 DAND5Q8N907 189 aa3.73□□□□□ -1.81
SYNE1-219ENST00000469439 XAGE1AQ9HD64 81 aa3.73□□□□□ -1.81
SYNE1-219ENST00000469439 DNAH9Q9NYC9 4486 aa3.73□□□□□ -1.81
SYNE1-219ENST00000469439 PRKDCP78527 4128 aaKnown RBP3.72□□□□□ -1.81
SYNE1-219ENST00000469439 IGKV2-24A0A0C4DH68 120 aa3.72□□□□□ -1.81
SYNE1-219ENST00000469439 M0QXV9 152 aa3.72□□□□□ -1.81
SYNE1-219ENST00000469439 FABP2P12104 132 aa3.72□□□□□ -1.81
SYNE1-219ENST00000469439 FXYD2P54710 66 aa3.72□□□□□ -1.81
SYNE1-219ENST00000469439 NPC2P61916 151 aa3.72□□□□□ -1.81
SYNE1-219ENST00000469439 WFDC2Q14508 124 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms