RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 IGKV2D-28P01615 120 aa5.62□□□□□ -1.51
USP39-212ENST00000465514 S100A1P23297 94 aa5.62□□□□□ -1.51
USP39-212ENST00000465514 LINC00304Q8N9R0 145 aa5.62□□□□□ -1.51
USP39-212ENST00000465514 KRTAP4-1Q9BYQ7 146 aa5.62□□□□□ -1.51
USP39-212ENST00000465514 IGKV2D-26A0A0A0MRZ7 120 aa5.61□□□□□ -1.51
USP39-212ENST00000465514 LINC01549A6NIU2 74 aa5.61□□□□□ -1.51
USP39-212ENST00000465514 ATP5LO75964 103 aa5.61□□□□□ -1.51
USP39-212ENST00000465514 PFN2P35080 140 aa5.61□□□□□ -1.51
USP39-212ENST00000465514 PMVKQ15126 192 aa5.61□□□□□ -1.51
USP39-212ENST00000465514 IGLV7-46A0A075B6I9 117 aa5.6□□□□□ -1.51
USP39-212ENST00000465514 H3BRM9 83 aa5.6□□□□□ -1.51
USP39-212ENST00000465514 APOC3P02656 99 aa5.6□□□□□ -1.51
USP39-212ENST00000465514 PRLHP81277 87 aa5.6□□□□□ -1.51
USP39-212ENST00000465514 LCE4AQ5TA78 99 aa5.6□□□□□ -1.51
USP39-212ENST00000465514 TRAV9-1A0A075B6T8 112 aa5.59□□□□□ -1.51
USP39-212ENST00000465514 TMEM238C9JI98 176 aa5.59□□□□□ -1.51
USP39-212ENST00000465514 VPREB1P12018 145 aa5.59□□□□□ -1.51
USP39-212ENST00000465514 FAM19A1Q7Z5A9 133 aa5.59□□□□□ -1.51
USP39-212ENST00000465514 SVBPQ8N300 66 aa5.59□□□□□ -1.51
USP39-212ENST00000465514 GNB1LQ9BYB4 327 aa5.59□□□□□ -1.51
USP39-212ENST00000465514 IGLV5-39A0A0G2JS06 123 aa5.58□□□□□ -1.52
USP39-212ENST00000465514 SNAPINO95295 136 aa5.58□□□□□ -1.52
USP39-212ENST00000465514 FA2HQ7L5A8 372 aa5.58□□□□□ -1.52
USP39-212ENST00000465514 TMEM126AQ9H061 195 aa5.58□□□□□ -1.52
USP39-212ENST00000465514 SND1-IT1Q9HBX3 110 aa5.58□□□□□ -1.52
USP39-212ENST00000465514 SMCO4Q9NRQ5 59 aa5.58□□□□□ -1.52
USP39-212ENST00000465514 M0R378 163 aa5.57□□□□□ -1.52
USP39-212ENST00000465514 IGLC3P0DOY3 106 aa5.57□□□□□ -1.52
USP39-212ENST00000465514 NDUFA6P56556 154 aa5.57□□□□□ -1.52
USP39-212ENST00000465514 RPL24P83731 157 aaKnown RBP5.57□□□□□ -1.52
USP39-212ENST00000465514 RHEBQ15382 184 aa5.57□□□□□ -1.52
USP39-212ENST00000465514 PLEKHB2Q96CS7 222 aa5.57□□□□□ -1.52
USP39-212ENST00000465514 KRTAP4-2Q9BYR5 136 aa5.57□□□□□ -1.52
USP39-212ENST00000465514 ERG28Q9UKR5 140 aa5.57□□□□□ -1.52
USP39-212ENST00000465514 ZNF22P17026 224 aaPredicted RBP5.56□□□□□ -1.52
USP39-212ENST00000465514 S100PP25815 95 aa5.56□□□□□ -1.52
USP39-212ENST00000465514 CTAG1AP78358 180 aa5.56□□□□□ -1.52
USP39-212ENST00000465514 FABP9Q0Z7S8 132 aa5.56□□□□□ -1.52
USP39-212ENST00000465514 COX17Q14061 63 aa5.56□□□□□ -1.52
USP39-212ENST00000465514 ASB16-AS1Q495Z4 193 aa5.56□□□□□ -1.52
USP39-212ENST00000465514 C3orf22Q8N5N4 141 aa5.56□□□□□ -1.52
USP39-212ENST00000465514 Q8NDZ9 215 aa5.56□□□□□ -1.52
USP39-212ENST00000465514 ZNF625Q96I27 306 aaPredicted RBP5.56□□□□□ -1.52
USP39-212ENST00000465514 CFC1BP0CG36 223 aa5.55□□□□□ -1.52
USP39-212ENST00000465514 MT1HP80294 61 aa5.55□□□□□ -1.52
USP39-212ENST00000465514 CBLN2Q8IUK8 224 aa5.55□□□□□ -1.52
USP39-212ENST00000465514 PPDPFQ9H3Y8 114 aa5.55□□□□□ -1.52
USP39-212ENST00000465514 A0A096LNJ9 63 aa5.54□□□□□ -1.52
USP39-212ENST00000465514 COX19Q49B96 90 aa5.54□□□□□ -1.52
USP39-212ENST00000465514 RPS10P5Q9NQ39 176 aa5.54□□□□□ -1.52
USP39-212ENST00000465514 HIGD2AQ9BW72 106 aa5.53□□□□□ -1.52
USP39-212ENST00000465514 C11orf86A6NJI1 115 aa5.52□□□□□ -1.53
USP39-212ENST00000465514 PMCHL1Q16048 86 aa5.52□□□□□ -1.53
USP39-212ENST00000465514 TMEM170BQ5T4T1 132 aa5.52□□□□□ -1.53
USP39-212ENST00000465514 SPAG11AQ6PDA7 123 aa5.52□□□□□ -1.53
USP39-212ENST00000465514 URB1-AS1Q96HZ7 61 aa5.52□□□□□ -1.53
USP39-212ENST00000465514 SPRR4Q96PI1 79 aa5.52□□□□□ -1.53
USP39-212ENST00000465514 HBDP02042 147 aa5.51□□□□□ -1.53
USP39-212ENST00000465514 LINC00614P0C842 121 aa5.51□□□□□ -1.53
USP39-212ENST00000465514 LINC00158P58513 81 aa5.51□□□□□ -1.53
USP39-212ENST00000465514 KRTAP10-6P60371 365 aaPredicted RBP5.51□□□□□ -1.53
USP39-212ENST00000465514 SFTA2Q6UW10 78 aa5.51□□□□□ -1.53
USP39-212ENST00000465514 BAGE3Q86Y29 109 aa5.51□□□□□ -1.53
USP39-212ENST00000465514 A0A0U1RRA0 63 aa5.5□□□□□ -1.53
USP39-212ENST00000465514 H3BS24 57 aa5.5□□□□□ -1.53
USP39-212ENST00000465514 C18orf32Q8TCD1 76 aa5.5□□□□□ -1.53
USP39-212ENST00000465514 YPEL4Q96NS1 127 aa5.5□□□□□ -1.53
USP39-212ENST00000465514 KRTAP19-2Q3LHN2 52 aa5.49□□□□□ -1.53
USP39-212ENST00000465514 FP248Q71RG6 208 aaPredicted RBP5.49□□□□□ -1.53
USP39-212ENST00000465514 LINC00337Q8N6G1 96 aa5.49□□□□□ -1.53
USP39-212ENST00000465514 DAND5Q8N907 189 aa5.49□□□□□ -1.53
USP39-212ENST00000465514 Q8NBF4 154 aa5.49□□□□□ -1.53
USP39-212ENST00000465514 TRAPPC1Q9Y5R8 145 aa5.49□□□□□ -1.53
USP39-212ENST00000465514 ZNF706Q9Y5V0 76 aaPredicted RBP5.49□□□□□ -1.53
USP39-212ENST00000465514 SEC61BP60468 96 aaKnown RBP5.48□□□□□ -1.53
USP39-212ENST00000465514 CHTOPQ9Y3Y2 248 aaKnown RBP5.48□□□□□ -1.53
USP39-212ENST00000465514 SSPOA2VEC9 5147 aa5.47□□□□□ -1.53
USP39-212ENST00000465514 TMEM223A0PJW6 202 aa5.47□□□□□ -1.53
USP39-212ENST00000465514 PRYO14603 147 aa5.47□□□□□ -1.53
USP39-212ENST00000465514 SMIM13P0DJ93 91 aa5.47□□□□□ -1.53
USP39-212ENST00000465514 KRTAP13-3Q3SY46 172 aa5.47□□□□□ -1.53
USP39-212ENST00000465514 BOD1L2Q8IYS8 172 aa5.47□□□□□ -1.53
USP39-212ENST00000465514 SMCR5Q8TEV8 140 aa5.47□□□□□ -1.53
USP39-212ENST00000465514 KRTAP4-11Q9BYQ6 195 aa5.47□□□□□ -1.53
USP39-212ENST00000465514 COLCA2A8K830 154 aa5.46□□□□□ -1.54
USP39-212ENST00000465514 NCR3O14931 201 aa5.46□□□□□ -1.54
USP39-212ENST00000465514 KCNQ1DNQ9H478 68 aa5.46□□□□□ -1.54
USP39-212ENST00000465514 USH2AO75445 5202 aa5.45□□□□□ -1.54
USP39-212ENST00000465514 SYNE2Q8WXH0 6885 aaKnown RBP5.45□□□□□ -1.54
USP39-212ENST00000465514 ETDCA0A1B0GVM5 59 aa5.45□□□□□ -1.54
USP39-212ENST00000465514 KRTAP4-16G5E9R7 235 aaPredicted RBP5.45□□□□□ -1.54
USP39-212ENST00000465514 SPINK1P00995 79 aa5.45□□□□□ -1.54
USP39-212ENST00000465514 SPRR1AP35321 89 aa5.45□□□□□ -1.54
USP39-212ENST00000465514 MEIG1Q5JSS6 88 aa5.45□□□□□ -1.54
USP39-212ENST00000465514 MIR7-3HGQ8N6C7 128 aa5.45□□□□□ -1.54
USP39-212ENST00000465514 FCGBPQ9Y6R7 5405 aaPredicted RBP5.45□□□□□ -1.54
USP39-212ENST00000465514 TRAV12-1A0A0B4J245 112 aa5.44□□□□□ -1.54
USP39-212ENST00000465514 LINC00483Q53H64 154 aa5.44□□□□□ -1.54
USP39-212ENST00000465514 TRBV10-3A0A0K0K1G6 114 aa5.43□□□□□ -1.54
USP39-212ENST00000465514 GAGE2AQ6NT46 116 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms