RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 TTC28Q96AY4 2481 aa0.36□□□□□ -2.35
CLK1-208ENST00000464454 TRAV21A0A0B4J279 112 aa0.36□□□□□ -2.35
CLK1-208ENST00000464454 NDUFB1O75438 58 aa0.36□□□□□ -2.35
CLK1-208ENST00000464454 ATP5EP2Q5VTU8 51 aa0.36□□□□□ -2.35
CLK1-208ENST00000464454 SMCO4Q9NRQ5 59 aa0.36□□□□□ -2.35
CLK1-208ENST00000464454 PRO0255Q9UI72 69 aa0.36□□□□□ -2.35
CLK1-208ENST00000464454 TPRP12270 2363 aaKnown RBP0.36□□□□□ -2.35
CLK1-208ENST00000464454 PIEZO1Q92508 2521 aa0.36□□□□□ -2.35
CLK1-208ENST00000464454 MDN1Q9NU22 5596 aa0.36□□□□□ -2.35
CLK1-208ENST00000464454 CCDC141Q6ZP82 1450 aa0.35□□□□□ -2.35
CLK1-208ENST00000464454 C2CD3Q4AC94 2353 aa0.35□□□□□ -2.35
CLK1-208ENST00000464454 COX6B1P14854 86 aa0.35□□□□□ -2.35
CLK1-208ENST00000464454 COX7BP24311 80 aa0.35□□□□□ -2.35
CLK1-208ENST00000464454 SPRR1AP35321 89 aa0.35□□□□□ -2.35
CLK1-208ENST00000464454 Q5BKY6 102 aa0.35□□□□□ -2.35
CLK1-208ENST00000464454 USMG5Q96IX5 58 aa0.35□□□□□ -2.35
CLK1-208ENST00000464454 ANK2Q01484 3957 aa0.35□□□□□ -2.35
CLK1-208ENST00000464454 ANKRD50Q9ULJ7 1429 aa0.35□□□□□ -2.35
CLK1-208ENST00000464454 RGPD1P0DJD0 1748 aa0.35□□□□□ -2.35
CLK1-208ENST00000464454 GPR98Q8WXG9 6306 aa0.34□□□□□ -2.35
CLK1-208ENST00000464454 CPSF4LA6NMK7 179 aaKnown RBP0.34□□□□□ -2.36
CLK1-208ENST00000464454 PDCD5O14737 125 aa0.34□□□□□ -2.36
CLK1-208ENST00000464454 IFI6P09912 130 aa0.34□□□□□ -2.36
CLK1-208ENST00000464454 SMIM13P0DJ93 91 aa0.34□□□□□ -2.36
CLK1-208ENST00000464454 DEFB112Q30KQ8 113 aa0.34□□□□□ -2.36
CLK1-208ENST00000464454 RGPD2P0DJD1 1756 aa0.34□□□□□ -2.36
CLK1-208ENST00000464454 ZNF831Q5JPB2 1677 aa0.33□□□□□ -2.36
CLK1-208ENST00000464454 PTPRZ1P23471 2315 aaPredicted RBP0.33□□□□□ -2.36
CLK1-208ENST00000464454 SPTBN2O15020 2390 aa0.33□□□□□ -2.36
CLK1-208ENST00000464454 SUPT6HQ7KZ85 1726 aaKnown RBP0.33□□□□□ -2.36
CLK1-208ENST00000464454 FXYD6-FXYD2A0A087WZ82 144 aa0.33□□□□□ -2.36
CLK1-208ENST00000464454 UMAD1C9J7I0 102 aa0.33□□□□□ -2.36
CLK1-208ENST00000464454 SPRR1BP22528 89 aa0.33□□□□□ -2.36
CLK1-208ENST00000464454 IFI27P40305 119 aaPredicted RBP0.33□□□□□ -2.36
CLK1-208ENST00000464454 HEPN1Q6WQI6 88 aa0.33□□□□□ -2.36
CLK1-208ENST00000464454 ZFYVE26Q68DK2 2539 aa0.33□□□□□ -2.36
CLK1-208ENST00000464454 ABCA12Q86UK0 2595 aa0.33□□□□□ -2.36
CLK1-208ENST00000464454 MUC5ACP98088 5654 aa0.33□□□□□ -2.36
CLK1-208ENST00000464454 FAT4Q6V0I7 4981 aa0.33□□□□□ -2.36
CLK1-208ENST00000464454 CSMD3Q7Z407 3707 aa0.33□□□□□ -2.36
CLK1-208ENST00000464454 CELSR2Q9HCU4 2923 aa0.32□□□□□ -2.36
CLK1-208ENST00000464454 COX6B2Q6YFQ2 88 aa0.32□□□□□ -2.36
CLK1-208ENST00000464454 GAFA1Q96PS6 74 aa0.32□□□□□ -2.36
CLK1-208ENST00000464454 CRIPTQ9P021 101 aa0.32□□□□□ -2.36
CLK1-208ENST00000464454 LRRC7Q96NW7 1537 aa0.32□□□□□ -2.36
CLK1-208ENST00000464454 RGPD8O14715 1765 aaPredicted RBP0.32□□□□□ -2.36
CLK1-208ENST00000464454 RGPD5Q99666 1765 aa0.32□□□□□ -2.36
CLK1-208ENST00000464454 DNMBPQ6XZF7 1577 aa0.32□□□□□ -2.36
CLK1-208ENST00000464454 PIK3C2BO00750 1634 aa0.31□□□□□ -2.36
CLK1-208ENST00000464454 CLIP1P30622 1438 aa0.31□□□□□ -2.36
CLK1-208ENST00000464454 MRPL34Q9BQ48 92 aaKnown RBP0.31□□□□□ -2.36
CLK1-208ENST00000464454 DUOX2Q9NRD8 1548 aa0.31□□□□□ -2.36
CLK1-208ENST00000464454 UGGT2Q9NYU1 1516 aa0.31□□□□□ -2.36
CLK1-208ENST00000464454 POLQO75417 2590 aa0.31□□□□□ -2.36
CLK1-208ENST00000464454 PPRC1Q5VV67 1664 aaKnown RBP0.3□□□□□ -2.36
CLK1-208ENST00000464454 USF3Q68DE3 2245 aa0.3□□□□□ -2.36
CLK1-208ENST00000464454 QSER1Q2KHR3 1735 aa0.3□□□□□ -2.36
CLK1-208ENST00000464454 URB1O60287 2271 aaKnown RBP0.3□□□□□ -2.36
CLK1-208ENST00000464454 COX8AP10176 69 aa0.3□□□□□ -2.36
CLK1-208ENST00000464454 PKD1L3Q7Z443 1732 aa0.3□□□□□ -2.36
CLK1-208ENST00000464454 LRRIQ1Q96JM4 1722 aa0.3□□□□□ -2.36
CLK1-208ENST00000464454 SCN11AQ9UI33 1791 aa0.29□□□□□ -2.36
CLK1-208ENST00000464454 ANKRD36A6QL64 1941 aa0.29□□□□□ -2.36
CLK1-208ENST00000464454 SPTY2D1-AS1A0A0U1RR47 76 aa0.29□□□□□ -2.36
CLK1-208ENST00000464454 CCL22O00626 93 aa0.29□□□□□ -2.36
CLK1-208ENST00000464454 F8P00451 2351 aa0.29□□□□□ -2.36
CLK1-208ENST00000464454 SYNE1Q8NF91 8797 aaKnown RBP0.29□□□□□ -2.36
CLK1-208ENST00000464454 PLCE1Q9P212 2302 aa0.29□□□□□ -2.36
CLK1-208ENST00000464454 IGF2RP11717 2491 aa0.28□□□□□ -2.36
CLK1-208ENST00000464454 POLR1AO95602 1720 aaPredicted RBP0.28□□□□□ -2.36
CLK1-208ENST00000464454 PIEZO2Q9H5I5 2752 aa0.28□□□□□ -2.36
CLK1-208ENST00000464454 SMIM31A0A1B0GVY4 71 aa0.28□□□□□ -2.36
CLK1-208ENST00000464454 I3L3M4 83 aa0.28□□□□□ -2.36
CLK1-208ENST00000464454 NREPQ16612 68 aa0.28□□□□□ -2.36
CLK1-208ENST00000464454 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.27□□□□□ -2.372e-8■■■■□ 25.2
CLK1-208ENST00000464454 LTN1O94822 1766 aa0.27□□□□□ -2.37
CLK1-208ENST00000464454 TENM4Q6N022 2769 aa0.27□□□□□ -2.37
CLK1-208ENST00000464454 DEFA5Q01523 94 aa0.27□□□□□ -2.37
CLK1-208ENST00000464454 ASXL1Q8IXJ9 1541 aa0.27□□□□□ -2.37
CLK1-208ENST00000464454 ADAMTS12P58397 1594 aa0.27□□□□□ -2.37
CLK1-208ENST00000464454 IQGAP3Q86VI3 1631 aa0.27□□□□□ -2.37
CLK1-208ENST00000464454 EIF2AK4Q9P2K8 1649 aaKnown RBP0.27□□□□□ -2.37
CLK1-208ENST00000464454 WIZO95785 1651 aa0.27□□□□□ -2.37
CLK1-208ENST00000464454 DOT1LQ8TEK3 1739 aa0.27□□□□□ -2.37
CLK1-208ENST00000464454 ARFGEF2Q9Y6D5 1785 aa0.27□□□□□ -2.37
CLK1-208ENST00000464454 PTPRQQ9UMZ3 2332 aa0.26□□□□□ -2.37
CLK1-208ENST00000464454 LRP1Q07954 4544 aaKnown RBP0.26□□□□□ -2.37
CLK1-208ENST00000464454 A0A087WXM4 84 aa0.26□□□□□ -2.37
CLK1-208ENST00000464454 WFDC9Q8NEX5 89 aa0.26□□□□□ -2.37
CLK1-208ENST00000464454 DEFB105AQ8NG35 78 aa0.26□□□□□ -2.37
CLK1-208ENST00000464454 KCNQ1DNQ9H478 68 aa0.26□□□□□ -2.37
CLK1-208ENST00000464454 DIP2AQ14689 1571 aa0.26□□□□□ -2.37
CLK1-208ENST00000464454 NWD1Q149M9 1564 aa0.26□□□□□ -2.37
CLK1-208ENST00000464454 CDC42BPGQ6DT37 1551 aa0.26□□□□□ -2.37
CLK1-208ENST00000464454 MYO5CQ9NQX4 1742 aa0.26□□□□□ -2.37
CLK1-208ENST00000464454 CHD9Q3L8U1 2897 aa0.26□□□□□ -2.37
CLK1-208ENST00000464454 DOPEY2Q9Y3R5 2298 aa0.25□□□□□ -2.37
CLK1-208ENST00000464454 FMN2Q9NZ56 1722 aa0.25□□□□□ -2.37
CLK1-208ENST00000464454 PREX1Q8TCU6 1659 aa0.25□□□□□ -2.37
CLK1-208ENST00000464454 A0A087WWC5 75 aa0.25□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms