RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 CLLU1Q5K131 121 aa12.85□□□□□ -0.35
USP4-208ENST00000464168 FP248Q71RG6 208 aaPredicted RBP12.85□□□□□ -0.35
USP4-208ENST00000464168 COX19Q49B96 90 aa12.84□□□□□ -0.35
USP4-208ENST00000464168 URB1-AS1Q96HZ7 61 aa12.83□□□□□ -0.36
USP4-208ENST00000464168 C11orf86A6NJI1 115 aa12.82□□□□□ -0.36
USP4-208ENST00000464168 SFTA2Q6UW10 78 aa12.82□□□□□ -0.36
USP4-208ENST00000464168 UQCC3Q6UW78 93 aa12.82□□□□□ -0.36
USP4-208ENST00000464168 LINC00158P58513 81 aa12.8□□□□□ -0.36
USP4-208ENST00000464168 KRTAP13-3Q3SY46 172 aa12.8□□□□□ -0.36
USP4-208ENST00000464168 C4orf48Q5BLP8 95 aa12.8□□□□□ -0.36
USP4-208ENST00000464168 TMEM170BQ5T4T1 132 aa12.8□□□□□ -0.36
USP4-208ENST00000464168 LINC00614P0C842 121 aa12.79□□□□□ -0.36
USP4-208ENST00000464168 BAGE3Q86Y29 109 aa12.79□□□□□ -0.36
USP4-208ENST00000464168 LINC00337Q8N6G1 96 aa12.79□□□□□ -0.36
USP4-208ENST00000464168 DAND5Q8N907 189 aa12.79□□□□□ -0.36
USP4-208ENST00000464168 ZNF706Q9Y5V0 76 aaPredicted RBP12.79□□□□□ -0.36
USP4-208ENST00000464168 HBDP02042 147 aa12.78□□□□□ -0.36
USP4-208ENST00000464168 PMCHL1Q16048 86 aa12.78□□□□□ -0.36
USP4-208ENST00000464168 Q8NBF4 154 aa12.78□□□□□ -0.36
USP4-208ENST00000464168 SEC11CQ9BY50 192 aa12.78□□□□□ -0.36
USP4-208ENST00000464168 ASB16-AS1Q495Z4 193 aa12.77□□□□□ -0.37
USP4-208ENST00000464168 C18orf32Q8TCD1 76 aa12.77□□□□□ -0.37
USP4-208ENST00000464168 A0A0U1RRA0 63 aa12.76□□□□□ -0.37
USP4-208ENST00000464168 PRYO14603 147 aa12.73□□□□□ -0.37
USP4-208ENST00000464168 SPRR1AP35321 89 aa12.73□□□□□ -0.37
USP4-208ENST00000464168 SMCR5Q8TEV8 140 aa12.73□□□□□ -0.37
USP4-208ENST00000464168 KRTAP4-1Q9BYQ7 146 aa12.73□□□□□ -0.37
USP4-208ENST00000464168 SPINK1P00995 79 aa12.72□□□□□ -0.37
USP4-208ENST00000464168 KCNQ1DNQ9H478 68 aa12.72□□□□□ -0.37
USP4-208ENST00000464168 KRTAP4-16G5E9R7 235 aaPredicted RBP12.71□□□□□ -0.37
USP4-208ENST00000464168 BOD1L2Q8IYS8 172 aa12.71□□□□□ -0.37
USP4-208ENST00000464168 CHTOPQ9Y3Y2 248 aaKnown RBP12.71□□□□□ -0.37
USP4-208ENST00000464168 TMEM223A0PJW6 202 aa12.7□□□□□ -0.38
USP4-208ENST00000464168 SMIM13P0DJ93 91 aa12.7□□□□□ -0.38
USP4-208ENST00000464168 TRAPPC1Q9Y5R8 145 aa12.7□□□□□ -0.38
USP4-208ENST00000464168 NCR3O14931 201 aa12.69□□□□□ -0.38
USP4-208ENST00000464168 LINC00483Q53H64 154 aa12.69□□□□□ -0.38
USP4-208ENST00000464168 LINC01547P58512 204 aaPredicted RBP12.68□□□□□ -0.38
USP4-208ENST00000464168 RPS10P5Q9NQ39 176 aa12.68□□□□□ -0.38
USP4-208ENST00000464168 ATP6V1G1O75348 118 aa12.67□□□□□ -0.38
USP4-208ENST00000464168 RHEBQ15382 184 aa12.67□□□□□ -0.38
USP4-208ENST00000464168 C10orf91Q5T1B1 145 aa12.67□□□□□ -0.38
USP4-208ENST00000464168 ETDCA0A1B0GVM5 59 aa12.66□□□□□ -0.38
USP4-208ENST00000464168 IFITM2Q01629 132 aa12.66□□□□□ -0.38
USP4-208ENST00000464168 MIR7-3HGQ8N6C7 128 aa12.66□□□□□ -0.38
USP4-208ENST00000464168 SEC61BP60468 96 aaKnown RBP12.65□□□□□ -0.38
USP4-208ENST00000464168 TRBV10-3A0A0K0K1G6 114 aa12.64□□□□□ -0.39
USP4-208ENST00000464168 GAGE2AQ6NT46 116 aa12.64□□□□□ -0.39
USP4-208ENST00000464168 MEIG1Q5JSS6 88 aa12.63□□□□□ -0.39
USP4-208ENST00000464168 TRAV12-1A0A0B4J245 112 aa12.62□□□□□ -0.39
USP4-208ENST00000464168 LCE2DQ5TA82 110 aaPredicted RBP12.62□□□□□ -0.39
USP4-208ENST00000464168 ERC2-IT1O76042 136 aa12.61□□□□□ -0.39
USP4-208ENST00000464168 MOBPQ13875 183 aa12.61□□□□□ -0.39
USP4-208ENST00000464168 COMMD7Q86VX2 200 aa12.61□□□□□ -0.39
USP4-208ENST00000464168 Q8N377 158 aa12.61□□□□□ -0.39
USP4-208ENST00000464168 B5MCH6 92 aa12.6□□□□□ -0.39
USP4-208ENST00000464168 RPS29P62273 56 aaKnown RBP12.6□□□□□ -0.39
USP4-208ENST00000464168 HERV-K104P63124 156 aa12.6□□□□□ -0.39
USP4-208ENST00000464168 IFI27L1Q96BM0 104 aa12.6□□□□□ -0.39
USP4-208ENST00000464168 NDUFA12Q9UI09 145 aa12.6□□□□□ -0.39
USP4-208ENST00000464168 FSIP2Q5CZC0 6907 aa12.59□□□□□ -0.39
USP4-208ENST00000464168 IGLV9-49A0A0B4J1Y8 123 aa12.59□□□□□ -0.39
USP4-208ENST00000464168 SSBP3-AS1Q7Z2R9 100 aa12.59□□□□□ -0.39
USP4-208ENST00000464168 LINC00587B1AMM8 73 aa12.57□□□□□ -0.4
USP4-208ENST00000464168 FAM19A2Q8N3H0 131 aa12.56□□□□□ -0.4
USP4-208ENST00000464168 SLC25A20O43772 301 aa12.55□□□□□ -0.4
USP4-208ENST00000464168 Q9BRP9 147 aa12.55□□□□□ -0.4
USP4-208ENST00000464168 S100A12P80511 92 aa12.54□□□□□ -0.4
USP4-208ENST00000464168 XP32Q5T750 250 aa12.54□□□□□ -0.4
USP4-208ENST00000464168 LOC107984156A0A0G2JMH3 177 aa12.53□□□□□ -0.4
USP4-208ENST00000464168 MYMXA0A1B0GTQ4 84 aa12.53□□□□□ -0.4
USP4-208ENST00000464168 ARL17AQ8IVW1 177 aa12.53□□□□□ -0.4
USP4-208ENST00000464168 CHCHD1Q96BP2 118 aaKnown RBP12.53□□□□□ -0.4
USP4-208ENST00000464168 MAP1LC3CQ9BXW4 147 aa12.53□□□□□ -0.4
USP4-208ENST00000464168 DDTP30046 118 aa12.52□□□□□ -0.41
USP4-208ENST00000464168 Q6ZRX8 168 aa12.51□□□□□ -0.41
USP4-208ENST00000464168 TRBV10-2A0A0K0K1G8 114 aa12.5□□□□□ -0.41
USP4-208ENST00000464168 LCE2CQ5TA81 110 aa12.5□□□□□ -0.41
USP4-208ENST00000464168 TSPEAR-AS2P59090 65 aa12.49□□□□□ -0.41
USP4-208ENST00000464168 CRCT1Q9UGL9 99 aa12.47□□□□□ -0.41
USP4-208ENST00000464168 LEPROTO15243 131 aa12.44□□□□□ -0.42
USP4-208ENST00000464168 IGLV6-57P01721 117 aa12.44□□□□□ -0.42
USP4-208ENST00000464168 SPANXB1Q9NS25 103 aaPredicted RBP12.44□□□□□ -0.42
USP4-208ENST00000464168 APOC3P02656 99 aa12.43□□□□□ -0.42
USP4-208ENST00000464168 C9orf153Q5TBE3 101 aa12.43□□□□□ -0.42
USP4-208ENST00000464168 YPEL4Q96NS1 127 aa12.43□□□□□ -0.42
USP4-208ENST00000464168 H0Y8G0 127 aa12.42□□□□□ -0.42
USP4-208ENST00000464168 KRTAP19-2Q3LHN2 52 aa12.42□□□□□ -0.42
USP4-208ENST00000464168 HSBP1O75506 76 aa12.41□□□□□ -0.42
USP4-208ENST00000464168 S100A7L2Q5SY68 101 aa12.41□□□□□ -0.42
USP4-208ENST00000464168 NDUFC2O95298 119 aa12.4□□□□□ -0.42
USP4-208ENST00000464168 JOSD1Q15040 202 aaPredicted RBP12.4□□□□□ -0.42
USP4-208ENST00000464168 ST20-AS1Q8NBB2 130 aa12.4□□□□□ -0.42
USP4-208ENST00000464168 J3QQQ9 107 aa12.39□□□□□ -0.43
USP4-208ENST00000464168 SNAPINO95295 136 aa12.39□□□□□ -0.43
USP4-208ENST00000464168 MIEN1Q9BRT3 115 aa12.39□□□□□ -0.43
USP4-208ENST00000464168 TRAV23DV6A0A075B6W5 121 aa12.38□□□□□ -0.43
USP4-208ENST00000464168 SVBPQ8N300 66 aa12.37□□□□□ -0.43
USP4-208ENST00000464168 ZNF73O43830 326 aaPredicted RBP12.36□□□□□ -0.43
USP4-208ENST00000464168 EIF4EBP3O60516 100 aaPredicted RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms