RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 SPAG11AQ6PDA7 123 aa8.9□□□□□ -0.98
SKA3-204ENST00000462482 BAGE3Q86Y29 109 aa8.9□□□□□ -0.98
SKA3-204ENST00000462482 ZNF706Q9Y5V0 76 aaPredicted RBP8.9□□□□□ -0.98
SKA3-204ENST00000462482 ATP6V1G1O75348 118 aa8.89□□□□□ -0.99
SKA3-204ENST00000462482 KRTAP3-3Q9BYR6 98 aa8.89□□□□□ -0.99
SKA3-204ENST00000462482 KRTAP3-2Q9BYR7 98 aa8.89□□□□□ -0.99
SKA3-204ENST00000462482 RPS10P5Q9NQ39 176 aa8.89□□□□□ -0.99
SKA3-204ENST00000462482 RHEBQ15382 184 aa8.88□□□□□ -0.99
SKA3-204ENST00000462482 C3orf22Q8N5N4 141 aa8.87□□□□□ -0.99
SKA3-204ENST00000462482 PPDPFQ9H3Y8 114 aa8.87□□□□□ -0.99
SKA3-204ENST00000462482 TRAPPC1Q9Y5R8 145 aa8.87□□□□□ -0.99
SKA3-204ENST00000462482 A0A096LNJ9 63 aa8.86□□□□□ -0.99
SKA3-204ENST00000462482 C11orf86A6NJI1 115 aa8.86□□□□□ -0.99
SKA3-204ENST00000462482 C18orf32Q8TCD1 76 aa8.86□□□□□ -0.99
SKA3-204ENST00000462482 KRTAP9-2Q9BYQ4 174 aa8.86□□□□□ -0.99
SKA3-204ENST00000462482 PMCHL1Q16048 86 aa8.85□□□□□ -0.99
SKA3-204ENST00000462482 SPRR4Q96PI1 79 aa8.85□□□□□ -0.99
SKA3-204ENST00000462482 CHTOPQ9Y3Y2 248 aaKnown RBP8.85□□□□□ -0.99
SKA3-204ENST00000462482 A0A0U1RRA0 63 aa8.84□□□□□ -0.99
SKA3-204ENST00000462482 S100A12P80511 92 aa8.84□□□□□ -0.99
SKA3-204ENST00000462482 COMMD7Q86VX2 200 aa8.84□□□□□ -0.99
SKA3-204ENST00000462482 LINC00337Q8N6G1 96 aa8.84□□□□□ -0.99
SKA3-204ENST00000462482 FP248Q71RG6 208 aaPredicted RBP8.83□□□□□ -1
SKA3-204ENST00000462482 Q8NDZ9 215 aa8.83□□□□□ -1
SKA3-204ENST00000462482 URB1-AS1Q96HZ7 61 aa8.83□□□□□ -1
SKA3-204ENST00000462482 PRYO14603 147 aa8.82□□□□□ -1
SKA3-204ENST00000462482 MEIG1Q5JSS6 88 aa8.82□□□□□ -1
SKA3-204ENST00000462482 LCE2AQ5TA79 106 aaPredicted RBP8.82□□□□□ -1
SKA3-204ENST00000462482 BOD1L2Q8IYS8 172 aa8.82□□□□□ -1
SKA3-204ENST00000462482 ETDCA0A1B0GVM5 59 aa8.81□□□□□ -1
SKA3-204ENST00000462482 LINC00587B1AMM8 73 aa8.81□□□□□ -1
SKA3-204ENST00000462482 TMEM223A0PJW6 202 aa8.79□□□□□ -1
SKA3-204ENST00000462482 SMIM13P0DJ93 91 aa8.79□□□□□ -1
SKA3-204ENST00000462482 HERV-K104P63124 156 aa8.79□□□□□ -1
SKA3-204ENST00000462482 C10orf91Q5T1B1 145 aa8.79□□□□□ -1
SKA3-204ENST00000462482 MAP1LC3CQ9BXW4 147 aa8.79□□□□□ -1
SKA3-204ENST00000462482 TRAV12-1A0A0B4J245 112 aa8.78□□□□□ -1
SKA3-204ENST00000462482 NCR3O14931 201 aa8.78□□□□□ -1
SKA3-204ENST00000462482 IFITM2Q01629 132 aa8.78□□□□□ -1
SKA3-204ENST00000462482 Q8NBF4 154 aa8.78□□□□□ -1
SKA3-204ENST00000462482 SMCR5Q8TEV8 140 aa8.78□□□□□ -1
SKA3-204ENST00000462482 SPINK1P00995 79 aa8.77□□□□□ -1.01
SKA3-204ENST00000462482 MIR7-3HGQ8N6C7 128 aa8.77□□□□□ -1.01
SKA3-204ENST00000462482 DAND5Q8N907 189 aa8.77□□□□□ -1.01
SKA3-204ENST00000462482 IFI27L1Q96BM0 104 aa8.77□□□□□ -1.01
SKA3-204ENST00000462482 KCNQ1DNQ9H478 68 aa8.77□□□□□ -1.01
SKA3-204ENST00000462482 NDUFA12Q9UI09 145 aa8.77□□□□□ -1.01
SKA3-204ENST00000462482 FAT4Q6V0I7 4981 aa8.76□□□□□ -1.01
SKA3-204ENST00000462482 CHCHD1Q96BP2 118 aaKnown RBP8.76□□□□□ -1.01
SKA3-204ENST00000462482 MYMXA0A1B0GTQ4 84 aa8.75□□□□□ -1.01
SKA3-204ENST00000462482 NDUFA5Q16718 116 aa8.75□□□□□ -1.01
SKA3-204ENST00000462482 SPRR1AP35321 89 aa8.74□□□□□ -1.01
SKA3-204ENST00000462482 MUC17Q685J3 4493 aa8.74□□□□□ -1.01
SKA3-204ENST00000462482 TRBV10-3A0A0K0K1G6 114 aa8.73□□□□□ -1.01
SKA3-204ENST00000462482 SNAPINO95295 136 aa8.73□□□□□ -1.01
SKA3-204ENST00000462482 APOC3P02656 99 aa8.73□□□□□ -1.01
SKA3-204ENST00000462482 GAGE2AQ6NT46 116 aa8.73□□□□□ -1.01
SKA3-204ENST00000462482 FAM19A2Q8N3H0 131 aa8.72□□□□□ -1.01
SKA3-204ENST00000462482 HSBP1O75506 76 aa8.71□□□□□ -1.02
SKA3-204ENST00000462482 KRTAP13-3Q3SY46 172 aa8.71□□□□□ -1.02
SKA3-204ENST00000462482 LINC00483Q53H64 154 aa8.71□□□□□ -1.02
SKA3-204ENST00000462482 SVBPQ8N300 66 aa8.71□□□□□ -1.02
SKA3-204ENST00000462482 IGLV9-49A0A0B4J1Y8 123 aa8.7□□□□□ -1.02
SKA3-204ENST00000462482 SEC61BP60468 96 aaKnown RBP8.7□□□□□ -1.02
SKA3-204ENST00000462482 SSBP3-AS1Q7Z2R9 100 aa8.7□□□□□ -1.02
SKA3-204ENST00000462482 MIEN1Q9BRT3 115 aa8.7□□□□□ -1.02
SKA3-204ENST00000462482 KRTAP4-16G5E9R7 235 aaPredicted RBP8.69□□□□□ -1.02
SKA3-204ENST00000462482 H0Y8G0 127 aa8.69□□□□□ -1.02
SKA3-204ENST00000462482 DDTP30046 118 aa8.69□□□□□ -1.02
SKA3-204ENST00000462482 LINC01547P58512 204 aaPredicted RBP8.69□□□□□ -1.02
SKA3-204ENST00000462482 MOBPQ13875 183 aa8.69□□□□□ -1.02
SKA3-204ENST00000462482 ASB16-AS1Q495Z4 193 aa8.69□□□□□ -1.02
SKA3-204ENST00000462482 B5MCH6 92 aa8.68□□□□□ -1.02
SKA3-204ENST00000462482 RPS29P62273 56 aaKnown RBP8.68□□□□□ -1.02
SKA3-204ENST00000462482 TRBV10-2A0A0K0K1G8 114 aa8.67□□□□□ -1.02
SKA3-204ENST00000462482 S100A7L2Q5SY68 101 aa8.67□□□□□ -1.02
SKA3-204ENST00000462482 LEPROTO15243 131 aa8.66□□□□□ -1.02
SKA3-204ENST00000462482 SLC25A20O43772 301 aa8.66□□□□□ -1.02
SKA3-204ENST00000462482 JOSD1Q15040 202 aaPredicted RBP8.66□□□□□ -1.02
SKA3-204ENST00000462482 SPANXB1Q9NS25 103 aaPredicted RBP8.66□□□□□ -1.02
SKA3-204ENST00000462482 KRTAP9-6A0A140TA67 174 aa8.65□□□□□ -1.02
SKA3-204ENST00000462482 HERVK_113P61574 105 aa8.65□□□□□ -1.02
SKA3-204ENST00000462482 LOC107984156A0A0G2JMH3 177 aa8.64□□□□□ -1.03
SKA3-204ENST00000462482 PLNP26678 52 aa8.64□□□□□ -1.03
SKA3-204ENST00000462482 Q6ZRX8 168 aa8.64□□□□□ -1.03
SKA3-204ENST00000462482 ARL17AQ8IVW1 177 aa8.64□□□□□ -1.03
SKA3-204ENST00000462482 J3QQQ9 107 aa8.63□□□□□ -1.03
SKA3-204ENST00000462482 ERC2-IT1O76042 136 aa8.63□□□□□ -1.03
SKA3-204ENST00000462482 LEPROTL1O95214 131 aa8.63□□□□□ -1.03
SKA3-204ENST00000462482 NMUP48645 174 aa8.63□□□□□ -1.03
SKA3-204ENST00000462482 C9orf153Q5TBE3 101 aa8.63□□□□□ -1.03
SKA3-204ENST00000462482 Q8N377 158 aa8.63□□□□□ -1.03
SKA3-204ENST00000462482 LGALS3P17931 250 aaKnown RBP8.62□□□□□ -1.03
SKA3-204ENST00000462482 NDUFC2O95298 119 aa8.61□□□□□ -1.03
SKA3-204ENST00000462482 HINT1P49773 126 aaPredicted RBP8.61□□□□□ -1.03
SKA3-204ENST00000462482 TSPEAR-AS2P59090 65 aa8.61□□□□□ -1.03
SKA3-204ENST00000462482 Q9BRP9 147 aa8.61□□□□□ -1.03
SKA3-204ENST00000462482 CBY1Q9Y3M2 126 aa8.61□□□□□ -1.03
SKA3-204ENST00000462482 TRAV23DV6A0A075B6W5 121 aa8.6□□□□□ -1.03
SKA3-204ENST00000462482 DPM2O94777 84 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms