RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 LINC01556Q5JQF7 62 aa10.16□□□□□ -0.78
PTPRU-205ENST00000460170 LINC01547P58512 204 aaPredicted RBP10.16□□□□□ -0.78
PTPRU-205ENST00000460170 ESRGQ1W209 222 aa10.16□□□□□ -0.78
PTPRU-205ENST00000460170 C6orf48Q9UBA6 75 aa10.16□□□□□ -0.78
PTPRU-205ENST00000460170 A0A096LNT2 108 aa10.14□□□□□ -0.79
PTPRU-205ENST00000460170 BRCA2P51587 3418 aa10.14□□□□□ -0.79
PTPRU-205ENST00000460170 LY6G6CO95867 125 aa10.13□□□□□ -0.79
PTPRU-205ENST00000460170 H3BNG1 76 aa10.13□□□□□ -0.79
PTPRU-205ENST00000460170 Q9BRP9 147 aa10.12□□□□□ -0.79
PTPRU-205ENST00000460170 C22orf24Q9Y442 160 aa10.11□□□□□ -0.79
PTPRU-205ENST00000460170 PMAIP1Q13794 54 aa10.11□□□□□ -0.79
PTPRU-205ENST00000460170 Q8NAQ8 132 aa10.11□□□□□ -0.79
PTPRU-205ENST00000460170 LAMA2P24043 3122 aaKnown RBP10.11□□□□□ -0.79
PTPRU-205ENST00000460170 F8P00451 2351 aa10.11□□□□□ -0.79
PTPRU-205ENST00000460170 A0A087WSZ3 146 aa10.11□□□□□ -0.79
PTPRU-205ENST00000460170 SERP1Q9Y6X1 66 aa10.11□□□□□ -0.79
PTPRU-205ENST00000460170 CXCL6P80162 114 aa10.1□□□□□ -0.79
PTPRU-205ENST00000460170 SPATA3Q8NHX4 192 aa10.1□□□□□ -0.79
PTPRU-205ENST00000460170 CASC2Q6XLA1 102 aa10.1□□□□□ -0.79
PTPRU-205ENST00000460170 FLNBO75369 2602 aaKnown RBP10.1□□□□□ -0.79
PTPRU-205ENST00000460170 CSNK1G2-AS1Q8NCQ2 148 aa10.09□□□□□ -0.79
PTPRU-205ENST00000460170 LINC00208Q96KT6 92 aa10.09□□□□□ -0.79
PTPRU-205ENST00000460170 PRLHP81277 87 aa10.07□□□□□ -0.8
PTPRU-205ENST00000460170 HECTD1Q9ULT8 2610 aa10.07□□□□□ -0.8
PTPRU-205ENST00000460170 KIAA0087Q14695 138 aa10.07□□□□□ -0.8
PTPRU-205ENST00000460170 Q8N9L7 120 aa10.07□□□□□ -0.8
PTPRU-205ENST00000460170 TRBV7-6A0A0J9YX20 115 aa10.06□□□□□ -0.8
PTPRU-205ENST00000460170 TMEM254Q8TBM7 123 aa10.06□□□□□ -0.8
PTPRU-205ENST00000460170 CFAP54Q96N23 3096 aa10.06□□□□□ -0.8
PTPRU-205ENST00000460170 EIF4EBP3O60516 100 aaPredicted RBP10.05□□□□□ -0.8
PTPRU-205ENST00000460170 ELOF1P60002 83 aaKnown RBP10.05□□□□□ -0.8
PTPRU-205ENST00000460170 LINC00167Q96N53 147 aa10.05□□□□□ -0.8
PTPRU-205ENST00000460170 PRR15LQ9BU68 103 aa10.04□□□□□ -0.8
PTPRU-205ENST00000460170 K7ERS5 55 aa10.04□□□□□ -0.8
PTPRU-205ENST00000460170 SMCR5Q8TEV8 140 aa10.04□□□□□ -0.8
PTPRU-205ENST00000460170 DEFB116Q30KQ4 102 aa10.03□□□□□ -0.8
PTPRU-205ENST00000460170 Q6ZQT0 140 aa10.02□□□□□ -0.81
PTPRU-205ENST00000460170 GIG44P09565 113 aaPredicted RBP10.02□□□□□ -0.81
PTPRU-205ENST00000460170 IGLV5-52A0A0A0MRZ9 124 aa10.01□□□□□ -0.81
PTPRU-205ENST00000460170 GVQW2A0A096LPI5 108 aaPredicted RBP10.01□□□□□ -0.81
PTPRU-205ENST00000460170 CRYGAP11844 174 aa10.01□□□□□ -0.81
PTPRU-205ENST00000460170 KRTAP24-1Q3LI83 254 aa10.01□□□□□ -0.81
PTPRU-205ENST00000460170 CENPEQ02224 2701 aa10.01□□□□□ -0.81
PTPRU-205ENST00000460170 ZNF575Q86XF7 245 aa10□□□□□ -0.81
PTPRU-205ENST00000460170 LOC110117498A0A087WWA1 95 aa10□□□□□ -0.81
PTPRU-205ENST00000460170 C19orf73Q9NVV2 129 aa10□□□□□ -0.81
PTPRU-205ENST00000460170 HCG22E2RYF7 251 aa10□□□□□ -0.81
PTPRU-205ENST00000460170 CIRBP-AS1Q8TBR5 109 aa9.99□□□□□ -0.81
PTPRU-205ENST00000460170 IGHV6-1A0A0B4J1U7 121 aa9.98□□□□□ -0.81
PTPRU-205ENST00000460170 PSPHP1O15172 72 aa9.98□□□□□ -0.81
PTPRU-205ENST00000460170 UNC80Q8N2C7 3258 aa9.98□□□□□ -0.81
PTPRU-205ENST00000460170 BCE1O60756 84 aa9.98□□□□□ -0.81
PTPRU-205ENST00000460170 FLNAP21333 2647 aaKnown RBP9.97□□□□□ -0.81
PTPRU-205ENST00000460170 PRUNE2Q8WUY3 3088 aa9.97□□□□□ -0.81
PTPRU-205ENST00000460170 USP24Q9UPU5 2620 aa9.97□□□□□ -0.81
PTPRU-205ENST00000460170 MGAQ8IWI9 3026 aa9.97□□□□□ -0.81
PTPRU-205ENST00000460170 IGLV6-57P01721 117 aa9.96□□□□□ -0.81
PTPRU-205ENST00000460170 NHLRC4P0CG21 123 aaPredicted RBP9.96□□□□□ -0.81
PTPRU-205ENST00000460170 Q6ZRX8 168 aa9.96□□□□□ -0.82
PTPRU-205ENST00000460170 A0A1B0GW54 56 aa9.96□□□□□ -0.82
PTPRU-205ENST00000460170 C1orf134Q5TEV5 83 aa9.95□□□□□ -0.82
PTPRU-205ENST00000460170 ZNF292O60281 2723 aa9.95□□□□□ -0.82
PTPRU-205ENST00000460170 H0Y9P7 68 aa9.94□□□□□ -0.82
PTPRU-205ENST00000460170 VPREB1P12018 145 aa9.94□□□□□ -0.82
PTPRU-205ENST00000460170 LINC00588Q9Y4M8 146 aa9.94□□□□□ -0.82
PTPRU-205ENST00000460170 Q6ZRP5 223 aa9.93□□□□□ -0.82
PTPRU-205ENST00000460170 SMIM29Q86T20 159 aa9.93□□□□□ -0.82
PTPRU-205ENST00000460170 LINC00612Q8N6U2 182 aa9.93□□□□□ -0.82
PTPRU-205ENST00000460170 Q8NBF4 154 aa9.92□□□□□ -0.82
PTPRU-205ENST00000460170 MDFIQ99750 246 aa9.92□□□□□ -0.82
PTPRU-205ENST00000460170 PRO0628Q9UI54 55 aa9.92□□□□□ -0.82
PTPRU-205ENST00000460170 ITPR3Q14573 2671 aa9.91□□□□□ -0.82
PTPRU-205ENST00000460170 DNAH10OSP0CZ25 163 aa9.91□□□□□ -0.82
PTPRU-205ENST00000460170 PRR34Q9NV39 138 aa9.91□□□□□ -0.82
PTPRU-205ENST00000460170 WDFY4Q6ZS81 3184 aa9.9□□□□□ -0.82
PTPRU-205ENST00000460170 PCOTHQ58A44 107 aa9.9□□□□□ -0.82
PTPRU-205ENST00000460170 MGAM2Q2M2H8 2515 aa9.89□□□□□ -0.83
PTPRU-205ENST00000460170 KRTAP1-3Q8IUG1 177 aa9.88□□□□□ -0.83
PTPRU-205ENST00000460170 hDV103S1A0JD37 113 aa9.88□□□□□ -0.83
PTPRU-205ENST00000460170 KRTAP10-3P60369 221 aa9.88□□□□□ -0.83
PTPRU-205ENST00000460170 ST20-AS1Q8NBB2 130 aa9.88□□□□□ -0.83
PTPRU-205ENST00000460170 LINC00476Q8WZB0 136 aa9.88□□□□□ -0.83
PTPRU-205ENST00000460170 C16orf90A8MZG2 172 aa9.86□□□□□ -0.83
PTPRU-205ENST00000460170 TRIOO75962 3097 aa9.86□□□□□ -0.83
PTPRU-205ENST00000460170 PHF5AQ7RTV0 110 aaKnown RBP9.85□□□□□ -0.83
PTPRU-205ENST00000460170 C4orf26Q17RF5 130 aa9.85□□□□□ -0.83
PTPRU-205ENST00000460170 RPS28P62857 69 aaKnown RBP9.84□□□□□ -0.83
PTPRU-205ENST00000460170 C1orf64Q8NEQ6 169 aa9.84□□□□□ -0.83
PTPRU-205ENST00000460170 ATRQ13535 2644 aa9.83□□□□□ -0.84
PTPRU-205ENST00000460170 LINC00528Q8N1L1 170 aa9.83□□□□□ -0.84
PTPRU-205ENST00000460170 CFAP46Q8IYW2 2715 aa9.83□□□□□ -0.84
PTPRU-205ENST00000460170 SERTAD4-AS1Q5TG53 156 aa9.82□□□□□ -0.84
PTPRU-205ENST00000460170 TM2D3Q9BRN9 247 aa9.82□□□□□ -0.84
PTPRU-205ENST00000460170 EPM2AB3EWF7 344 aa9.82□□□□□ -0.84
PTPRU-205ENST00000460170 KCNQ1DNQ9H478 68 aa9.82□□□□□ -0.84
PTPRU-205ENST00000460170 XIRP2A4UGR9 3374 aa9.82□□□□□ -0.84
PTPRU-205ENST00000460170 NBDYA0A0U1RRE5 68 aa9.81□□□□□ -0.84
PTPRU-205ENST00000460170 FAM168BA1KXE4 195 aa9.81□□□□□ -0.84
PTPRU-205ENST00000460170 KRTAP10-11P60412 298 aa9.8□□□□□ -0.84
PTPRU-205ENST00000460170 C15orf56Q8N910 161 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 1062.7 ms