RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 LINC00158P58513 81 aa7.64□□□□□ -1.19
HMGB3-204ENST00000448905 LINC00614P0C842 121 aa7.63□□□□□ -1.19
HMGB3-204ENST00000448905 ZNF22P17026 224 aaPredicted RBP7.63□□□□□ -1.19
HMGB3-204ENST00000448905 CLLU1Q5K131 121 aa7.63□□□□□ -1.19
HMGB3-204ENST00000448905 TMEM170BQ5T4T1 132 aa7.63□□□□□ -1.19
HMGB3-204ENST00000448905 FP248Q71RG6 208 aaPredicted RBP7.63□□□□□ -1.19
HMGB3-204ENST00000448905 BAGE3Q86Y29 109 aa7.62□□□□□ -1.19
HMGB3-204ENST00000448905 C3orf22Q8N5N4 141 aa7.62□□□□□ -1.19
HMGB3-204ENST00000448905 SEC11CQ9BY50 192 aa7.62□□□□□ -1.19
HMGB3-204ENST00000448905 SPRR4Q96PI1 79 aa7.61□□□□□ -1.19
HMGB3-204ENST00000448905 HBDP02042 147 aa7.6□□□□□ -1.19
HMGB3-204ENST00000448905 S100A12P80511 92 aa7.6□□□□□ -1.19
HMGB3-204ENST00000448905 SPINK1P00995 79 aa7.59□□□□□ -1.19
HMGB3-204ENST00000448905 LCE2DQ5TA82 110 aaPredicted RBP7.59□□□□□ -1.19
HMGB3-204ENST00000448905 LINC00587B1AMM8 73 aa7.58□□□□□ -1.2
HMGB3-204ENST00000448905 C11orf86A6NJI1 115 aa7.57□□□□□ -1.2
HMGB3-204ENST00000448905 NDUFA12Q9UI09 145 aa7.57□□□□□ -1.2
HMGB3-204ENST00000448905 CHTOPQ9Y3Y2 248 aaKnown RBP7.57□□□□□ -1.2
HMGB3-204ENST00000448905 TRAPPC1Q9Y5R8 145 aa7.57□□□□□ -1.2
HMGB3-204ENST00000448905 A0A0U1RRA0 63 aa7.56□□□□□ -1.2
HMGB3-204ENST00000448905 ETDCA0A1B0GVM5 59 aa7.56□□□□□ -1.2
HMGB3-204ENST00000448905 PRYO14603 147 aa7.56□□□□□ -1.2
HMGB3-204ENST00000448905 LINC01547P58512 204 aaPredicted RBP7.56□□□□□ -1.2
HMGB3-204ENST00000448905 BOD1L2Q8IYS8 172 aa7.56□□□□□ -1.2
HMGB3-204ENST00000448905 Q8NBF4 154 aa7.56□□□□□ -1.2
HMGB3-204ENST00000448905 Q8NDZ9 215 aa7.56□□□□□ -1.2
HMGB3-204ENST00000448905 SMCR5Q8TEV8 140 aa7.56□□□□□ -1.2
HMGB3-204ENST00000448905 RPS10P5Q9NQ39 176 aa7.56□□□□□ -1.2
HMGB3-204ENST00000448905 MUC17Q685J3 4493 aa7.56□□□□□ -1.2
HMGB3-204ENST00000448905 A0A096LNJ9 63 aa7.55□□□□□ -1.2
HMGB3-204ENST00000448905 SEC61BP60468 96 aaKnown RBP7.55□□□□□ -1.2
HMGB3-204ENST00000448905 RHEBQ15382 184 aa7.55□□□□□ -1.2
HMGB3-204ENST00000448905 DAND5Q8N907 189 aa7.55□□□□□ -1.2
HMGB3-204ENST00000448905 HERV-K104P63124 156 aa7.54□□□□□ -1.2
HMGB3-204ENST00000448905 PMCHL1Q16048 86 aa7.54□□□□□ -1.2
HMGB3-204ENST00000448905 ASB16-AS1Q495Z4 193 aa7.54□□□□□ -1.2
HMGB3-204ENST00000448905 MEIG1Q5JSS6 88 aa7.54□□□□□ -1.2
HMGB3-204ENST00000448905 C18orf32Q8TCD1 76 aa7.54□□□□□ -1.2
HMGB3-204ENST00000448905 KCNQ1DNQ9H478 68 aa7.54□□□□□ -1.2
HMGB3-204ENST00000448905 MAP1LC3CQ9BXW4 147 aa7.53□□□□□ -1.2
HMGB3-204ENST00000448905 TMEM223A0PJW6 202 aa7.52□□□□□ -1.21
HMGB3-204ENST00000448905 SMIM13P0DJ93 91 aa7.52□□□□□ -1.21
HMGB3-204ENST00000448905 KRTAP13-3Q3SY46 172 aa7.52□□□□□ -1.21
HMGB3-204ENST00000448905 SSBP3-AS1Q7Z2R9 100 aa7.52□□□□□ -1.21
HMGB3-204ENST00000448905 URB1-AS1Q96HZ7 61 aa7.52□□□□□ -1.21
HMGB3-204ENST00000448905 SPRR1AP35321 89 aa7.51□□□□□ -1.21
HMGB3-204ENST00000448905 GAGE2AQ6NT46 116 aa7.51□□□□□ -1.21
HMGB3-204ENST00000448905 FAM19A2Q8N3H0 131 aa7.51□□□□□ -1.21
HMGB3-204ENST00000448905 MIR7-3HGQ8N6C7 128 aa7.51□□□□□ -1.21
HMGB3-204ENST00000448905 TRAV12-1A0A0B4J245 112 aa7.5□□□□□ -1.21
HMGB3-204ENST00000448905 NCR3O14931 201 aa7.5□□□□□ -1.21
HMGB3-204ENST00000448905 MYMXA0A1B0GTQ4 84 aa7.49□□□□□ -1.21
HMGB3-204ENST00000448905 SLC25A20O43772 301 aa7.49□□□□□ -1.21
HMGB3-204ENST00000448905 RPS29P62273 56 aaKnown RBP7.49□□□□□ -1.21
HMGB3-204ENST00000448905 LINC00483Q53H64 154 aa7.49□□□□□ -1.21
HMGB3-204ENST00000448905 IFI27L1Q96BM0 104 aa7.49□□□□□ -1.21
HMGB3-204ENST00000448905 IGLV9-49A0A0B4J1Y8 123 aa7.48□□□□□ -1.21
HMGB3-204ENST00000448905 C10orf91Q5T1B1 145 aa7.48□□□□□ -1.21
HMGB3-204ENST00000448905 CHCHD1Q96BP2 118 aaKnown RBP7.48□□□□□ -1.21
HMGB3-204ENST00000448905 TRBV10-3A0A0K0K1G6 114 aa7.47□□□□□ -1.21
HMGB3-204ENST00000448905 KRTAP4-16G5E9R7 235 aaPredicted RBP7.47□□□□□ -1.21
HMGB3-204ENST00000448905 COMMD7Q86VX2 200 aa7.47□□□□□ -1.21
HMGB3-204ENST00000448905 B5MCH6 92 aa7.46□□□□□ -1.22
HMGB3-204ENST00000448905 MOBPQ13875 183 aa7.46□□□□□ -1.22
HMGB3-204ENST00000448905 DDTP30046 118 aa7.45□□□□□ -1.22
HMGB3-204ENST00000448905 IFITM2Q01629 132 aa7.45□□□□□ -1.22
HMGB3-204ENST00000448905 JOSD1Q15040 202 aaPredicted RBP7.45□□□□□ -1.22
HMGB3-204ENST00000448905 TRBV10-2A0A0K0K1G8 114 aa7.44□□□□□ -1.22
HMGB3-204ENST00000448905 Q8N377 158 aa7.44□□□□□ -1.22
HMGB3-204ENST00000448905 MIEN1Q9BRT3 115 aa7.44□□□□□ -1.22
HMGB3-204ENST00000448905 S100A7L2Q5SY68 101 aa7.43□□□□□ -1.22
HMGB3-204ENST00000448905 LOC107984156A0A0G2JMH3 177 aa7.42□□□□□ -1.22
HMGB3-204ENST00000448905 NDUFA5Q16718 116 aa7.42□□□□□ -1.22
HMGB3-204ENST00000448905 ARL17AQ8IVW1 177 aa7.42□□□□□ -1.22
HMGB3-204ENST00000448905 HSBP1O75506 76 aa7.41□□□□□ -1.22
HMGB3-204ENST00000448905 ERC2-IT1O76042 136 aa7.41□□□□□ -1.22
HMGB3-204ENST00000448905 SNAPINO95295 136 aa7.41□□□□□ -1.22
HMGB3-204ENST00000448905 APOC3P02656 99 aa7.41□□□□□ -1.22
HMGB3-204ENST00000448905 HINT1P49773 126 aaPredicted RBP7.41□□□□□ -1.22
HMGB3-204ENST00000448905 Q6ZRX8 168 aa7.41□□□□□ -1.22
HMGB3-204ENST00000448905 KRTAP4-1Q9BYQ7 146 aa7.41□□□□□ -1.22
HMGB3-204ENST00000448905 SPANXB1Q9NS25 103 aaPredicted RBP7.41□□□□□ -1.22
HMGB3-204ENST00000448905 CBY1Q9Y3M2 126 aa7.41□□□□□ -1.22
HMGB3-204ENST00000448905 C9orf153Q5TBE3 101 aa7.4□□□□□ -1.22
HMGB3-204ENST00000448905 SVBPQ8N300 66 aa7.4□□□□□ -1.22
HMGB3-204ENST00000448905 H0Y8G0 127 aa7.39□□□□□ -1.23
HMGB3-204ENST00000448905 LEPROTO15243 131 aa7.39□□□□□ -1.23
HMGB3-204ENST00000448905 NDUFC2O95298 119 aa7.39□□□□□ -1.23
HMGB3-204ENST00000448905 XP32Q5T750 250 aa7.39□□□□□ -1.23
HMGB3-204ENST00000448905 Q9BRP9 147 aa7.39□□□□□ -1.23
HMGB3-204ENST00000448905 C5orf52A6NGY3 159 aa7.38□□□□□ -1.23
HMGB3-204ENST00000448905 PLNP26678 52 aa7.38□□□□□ -1.23
HMGB3-204ENST00000448905 NMUP48645 174 aa7.38□□□□□ -1.23
HMGB3-204ENST00000448905 HERVK_113P61574 105 aa7.38□□□□□ -1.23
HMGB3-204ENST00000448905 J3QQQ9 107 aa7.37□□□□□ -1.23
HMGB3-204ENST00000448905 IGLV6-57P01721 117 aa7.37□□□□□ -1.23
HMGB3-204ENST00000448905 SLC25A34Q6PIV7 304 aa7.37□□□□□ -1.23
HMGB3-204ENST00000448905 TRAV23DV6A0A075B6W5 121 aa7.36□□□□□ -1.23
HMGB3-204ENST00000448905 LEPROTL1O95214 131 aa7.36□□□□□ -1.23
HMGB3-204ENST00000448905 LGALS3P17931 250 aaKnown RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms