RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 ATP5LO75964 103 aa12.07□□□□□ -0.48
SHROOM1-204ENST00000440118 C3orf79P0CE67 100 aa12.07□□□□□ -0.48
SHROOM1-204ENST00000440118 VAMP8Q9BV40 100 aa12.07□□□□□ -0.48
SHROOM1-204ENST00000440118 HSBP1L1C9JCN9 74 aa12.06□□□□□ -0.48
SHROOM1-204ENST00000440118 MRPL55Q7Z7F7 128 aaKnown RBP12.05□□□□□ -0.48
SHROOM1-204ENST00000440118 URB1-AS1Q96HZ7 61 aa12.05□□□□□ -0.48
SHROOM1-204ENST00000440118 SYS1-DBNDD2H3BUS1 97 aa12.04□□□□□ -0.48
SHROOM1-204ENST00000440118 IGLC3P0DOY3 106 aa12.04□□□□□ -0.48
SHROOM1-204ENST00000440118 A0A096LNJ9 63 aa12.03□□□□□ -0.48
SHROOM1-204ENST00000440118 PRR26Q8N8Z3 221 aa12.03□□□□□ -0.48
SHROOM1-204ENST00000440118 TP73-AS1Q9UF72 201 aa12.03□□□□□ -0.48
SHROOM1-204ENST00000440118 NKAPP1Q8N9T2 125 aa12.02□□□□□ -0.49
SHROOM1-204ENST00000440118 ZNF22P17026 224 aaPredicted RBP12□□□□□ -0.49
SHROOM1-204ENST00000440118 PFN2P35080 140 aa12□□□□□ -0.49
SHROOM1-204ENST00000440118 IFI27L1Q96BM0 104 aa12□□□□□ -0.49
SHROOM1-204ENST00000440118 IGLV1-50A0A075B6I6 118 aa11.99□□□□□ -0.49
SHROOM1-204ENST00000440118 GAGE10A6NGK3 116 aa11.99□□□□□ -0.49
SHROOM1-204ENST00000440118 ZNF861PO60384 105 aa11.99□□□□□ -0.49
SHROOM1-204ENST00000440118 TMEM170BQ5T4T1 132 aa11.99□□□□□ -0.49
SHROOM1-204ENST00000440118 RPL37AP8A6NKH3 93 aa11.98□□□□□ -0.49
SHROOM1-204ENST00000440118 IGLV5-39A0A0G2JS06 123 aa11.97□□□□□ -0.49
SHROOM1-204ENST00000440118 RPL28P46779 137 aaKnown RBP11.97□□□□□ -0.49
SHROOM1-204ENST00000440118 DDTP30046 118 aa11.96□□□□□ -0.49
SHROOM1-204ENST00000440118 RPL13AP40429 203 aaKnown RBP11.96□□□□□ -0.49
SHROOM1-204ENST00000440118 LINC01545Q5VT33 79 aa11.96□□□□□ -0.49
SHROOM1-204ENST00000440118 LINC00167Q96N53 147 aa11.96□□□□□ -0.49
SHROOM1-204ENST00000440118 C11orf86A6NJI1 115 aa11.95□□□□□ -0.5
SHROOM1-204ENST00000440118 BCE1O60756 84 aa11.95□□□□□ -0.5
SHROOM1-204ENST00000440118 ERG28Q9UKR5 140 aa11.95□□□□□ -0.5
SHROOM1-204ENST00000440118 CHTOPQ9Y3Y2 248 aaKnown RBP11.95□□□□□ -0.5
SHROOM1-204ENST00000440118 KRTAP1-4P0C5Y4 121 aa11.94□□□□□ -0.5
SHROOM1-204ENST00000440118 SPATA45Q537H7 98 aa11.94□□□□□ -0.5
SHROOM1-204ENST00000440118 SFTA2Q6UW10 78 aa11.94□□□□□ -0.5
SHROOM1-204ENST00000440118 ZNF625Q96I27 306 aaPredicted RBP11.94□□□□□ -0.5
SHROOM1-204ENST00000440118 MIEN1Q9BRT3 115 aa11.94□□□□□ -0.5
SHROOM1-204ENST00000440118 LRP2P98164 4655 aa11.94□□□□□ -0.5
SHROOM1-204ENST00000440118 PMCHL2Q9BQD1 86 aa11.93□□□□□ -0.5
SHROOM1-204ENST00000440118 UQCR10Q9UDW1 63 aa11.93□□□□□ -0.5
SHROOM1-204ENST00000440118 PAM16Q9Y3D7 125 aa11.93□□□□□ -0.5
SHROOM1-204ENST00000440118 UBE2AP49459 152 aa11.92□□□□□ -0.5
SHROOM1-204ENST00000440118 IGLV5-37A0A075B6J1 123 aa11.91□□□□□ -0.5
SHROOM1-204ENST00000440118 PRO1933Q9H354 126 aa11.91□□□□□ -0.5
SHROOM1-204ENST00000440118 IGKV2-28A0A075B6P5 120 aa11.9□□□□□ -0.5
SHROOM1-204ENST00000440118 TRAV12-1A0A0B4J245 112 aa11.9□□□□□ -0.5
SHROOM1-204ENST00000440118 IGKV2D-28P01615 120 aa11.9□□□□□ -0.5
SHROOM1-204ENST00000440118 COX17Q14061 63 aa11.9□□□□□ -0.5
SHROOM1-204ENST00000440118 SND1-IT1Q9HBX3 110 aa11.9□□□□□ -0.5
SHROOM1-204ENST00000440118 RPL24P83731 157 aaKnown RBP11.89□□□□□ -0.51
SHROOM1-204ENST00000440118 H0Y8G0 127 aa11.88□□□□□ -0.51
SHROOM1-204ENST00000440118 PLNP26678 52 aa11.88□□□□□ -0.51
SHROOM1-204ENST00000440118 DPM2O94777 84 aa11.86□□□□□ -0.51
SHROOM1-204ENST00000440118 LINC00158P58513 81 aa11.86□□□□□ -0.51
SHROOM1-204ENST00000440118 TMEM223A0PJW6 202 aa11.84□□□□□ -0.51
SHROOM1-204ENST00000440118 LINC00587B1AMM8 73 aa11.84□□□□□ -0.51
SHROOM1-204ENST00000440118 IGKCP01834 107 aa11.84□□□□□ -0.51
SHROOM1-204ENST00000440118 VPREB1P12018 145 aa11.84□□□□□ -0.51
SHROOM1-204ENST00000440118 A0A0U1RRA0 63 aa11.83□□□□□ -0.52
SHROOM1-204ENST00000440118 SLC25A34Q6PIV7 304 aa11.83□□□□□ -0.52
SHROOM1-204ENST00000440118 M0R143 59 aa11.82□□□□□ -0.52
SHROOM1-204ENST00000440118 CRYGAP11844 174 aa11.82□□□□□ -0.52
SHROOM1-204ENST00000440118 MEIG1Q5JSS6 88 aa11.82□□□□□ -0.52
SHROOM1-204ENST00000440118 FAM19A1Q7Z5A9 133 aa11.82□□□□□ -0.52
SHROOM1-204ENST00000440118 ATOH7Q8N100 152 aa11.82□□□□□ -0.52
SHROOM1-204ENST00000440118 PRLHP81277 87 aa11.8□□□□□ -0.52
SHROOM1-204ENST00000440118 RNF213Q63HN8 5207 aa11.79□□□□□ -0.52
SHROOM1-204ENST00000440118 TMEM238C9JI98 176 aa11.79□□□□□ -0.52
SHROOM1-204ENST00000440118 TYMSOSQ8TAI1 123 aa11.79□□□□□ -0.52
SHROOM1-204ENST00000440118 TMEM126AQ9H061 195 aa11.79□□□□□ -0.52
SHROOM1-204ENST00000440118 A0A087X002 238 aa11.78□□□□□ -0.52
SHROOM1-204ENST00000440118 DLEU1O43261 78 aa11.78□□□□□ -0.52
SHROOM1-204ENST00000440118 HERVK_113P61574 105 aa11.78□□□□□ -0.52
SHROOM1-204ENST00000440118 PRR4Q16378 134 aa11.78□□□□□ -0.52
SHROOM1-204ENST00000440118 COX8AP10176 69 aa11.77□□□□□ -0.53
SHROOM1-204ENST00000440118 KRTAP13-1Q8IUC0 172 aa11.77□□□□□ -0.53
SHROOM1-204ENST00000440118 TSPAN13O95857 204 aa11.76□□□□□ -0.53
SHROOM1-204ENST00000440118 SMIM13P0DJ93 91 aa11.76□□□□□ -0.53
SHROOM1-204ENST00000440118 HERV-K104P63124 156 aa11.76□□□□□ -0.53
SHROOM1-204ENST00000440118 C14orf144Q96I85 54 aa11.76□□□□□ -0.53
SHROOM1-204ENST00000440118 ANAPC11Q9NYG5 84 aa11.75□□□□□ -0.53
SHROOM1-204ENST00000440118 NDUFA12Q9UI09 145 aa11.75□□□□□ -0.53
SHROOM1-204ENST00000440118 MYMXA0A1B0GTQ4 84 aa11.74□□□□□ -0.53
SHROOM1-204ENST00000440118 BOD1L2Q8IYS8 172 aa11.74□□□□□ -0.53
SHROOM1-204ENST00000440118 Q8NDZ9 215 aa11.74□□□□□ -0.53
SHROOM1-204ENST00000440118 M0R378 163 aa11.73□□□□□ -0.53
SHROOM1-204ENST00000440118 MIR7-3HGQ8N6C7 128 aa11.73□□□□□ -0.53
SHROOM1-204ENST00000440118 FAM229BQ4G0N7 80 aa11.72□□□□□ -0.53
SHROOM1-204ENST00000440118 HIGD2AQ9BW72 106 aa11.72□□□□□ -0.53
SHROOM1-204ENST00000440118 IGKV2D-26A0A0A0MRZ7 120 aa11.71□□□□□ -0.53
SHROOM1-204ENST00000440118 NCR3O14931 201 aa11.71□□□□□ -0.53
SHROOM1-204ENST00000440118 CTAG1AP78358 180 aa11.71□□□□□ -0.53
SHROOM1-204ENST00000440118 PLEKHB2Q96CS7 222 aa11.7□□□□□ -0.54
SHROOM1-204ENST00000440118 LEPROTO15243 131 aa11.68□□□□□ -0.54
SHROOM1-204ENST00000440118 NMUP48645 174 aa11.68□□□□□ -0.54
SHROOM1-204ENST00000440118 COL5A1-AS1Q5SY13 56 aa11.68□□□□□ -0.54
SHROOM1-204ENST00000440118 PRYO14603 147 aa11.67□□□□□ -0.54
SHROOM1-204ENST00000440118 HIGD1BQ9P298 99 aa11.67□□□□□ -0.54
SHROOM1-204ENST00000440118 LPAP08519 4548 aa11.67□□□□□ -0.54
SHROOM1-204ENST00000440118 LGALS3P17931 250 aaKnown RBP11.66□□□□□ -0.54
SHROOM1-204ENST00000440118 KRTAP13-2Q52LG2 175 aa11.66□□□□□ -0.54
SHROOM1-204ENST00000440118 ANKRD39Q53RE8 183 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms