RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 LOC107984156A0A0G2JMH3 177 aa13.25□□□□□ -0.29
CHD3-204ENST00000439235 MUSTN1Q8IVN3 82 aa13.25□□□□□ -0.29
CHD3-204ENST00000439235 ARL17AQ8IVW1 177 aa13.25□□□□□ -0.29
CHD3-204ENST00000439235 C9orf129Q5T035 196 aaKnown RBP13.24□□□□□ -0.29
CHD3-204ENST00000439235 SOSTDC1Q6X4U4 206 aa13.24□□□□□ -0.29
CHD3-204ENST00000439235 FAT2Q9NYQ8 4349 aa13.24□□□□□ -0.29
CHD3-204ENST00000439235 RPL24P83731 157 aaKnown RBP13.23□□□□□ -0.29
CHD3-204ENST00000439235 CTAG1AP78358 180 aa13.22□□□□□ -0.29
CHD3-204ENST00000439235 CEND1Q8N111 149 aa13.22□□□□□ -0.29
CHD3-204ENST00000439235 CHTF8P0CG12 524 aa13.21□□□□□ -0.29
CHD3-204ENST00000439235 EIF4EBP3O60516 100 aaPredicted RBP13.2□□□□□ -0.3
CHD3-204ENST00000439235 SPACA4Q8TDM5 124 aa13.2□□□□□ -0.3
CHD3-204ENST00000439235 PLA2G2DQ9UNK4 145 aa13.2□□□□□ -0.3
CHD3-204ENST00000439235 TMEM238LA0A1B0GVL6 79 aa13.19□□□□□ -0.3
CHD3-204ENST00000439235 A6NJY4 79 aa13.19□□□□□ -0.3
CHD3-204ENST00000439235 M0R143 59 aa13.19□□□□□ -0.3
CHD3-204ENST00000439235 NDUFC2O95298 119 aa13.19□□□□□ -0.3
CHD3-204ENST00000439235 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.18□□□□□ -0.3
CHD3-204ENST00000439235 DNAH11Q96DT5 4516 aa13.18□□□□□ -0.3
CHD3-204ENST00000439235 PCP4L1A6NKN8 68 aa13.17□□□□□ -0.3
CHD3-204ENST00000439235 KRTAP10-1P60331 282 aa13.17□□□□□ -0.3
CHD3-204ENST00000439235 A4D1N5 150 aa13.16□□□□□ -0.3
CHD3-204ENST00000439235 VPREB1P12018 145 aa13.16□□□□□ -0.3
CHD3-204ENST00000439235 DPH3Q96FX2 82 aa13.16□□□□□ -0.3
CHD3-204ENST00000439235 PANO1I0J062 215 aa13.15□□□□□ -0.3
CHD3-204ENST00000439235 FAM19A5Q7Z5A7 132 aaPredicted RBP13.15□□□□□ -0.3
CHD3-204ENST00000439235 NKAPP1Q8N9T2 125 aa13.15□□□□□ -0.3
CHD3-204ENST00000439235 IGLV5-37A0A075B6J1 123 aa13.14□□□□□ -0.31
CHD3-204ENST00000439235 FAM168BA1KXE4 195 aa13.14□□□□□ -0.31
CHD3-204ENST00000439235 FXYD2P54710 66 aa13.14□□□□□ -0.31
CHD3-204ENST00000439235 SERTAD4-AS1Q5TG53 156 aa13.14□□□□□ -0.31
CHD3-204ENST00000439235 HERC2O95714 4834 aa13.14□□□□□ -0.31
CHD3-204ENST00000439235 HINT1P49773 126 aaPredicted RBP13.13□□□□□ -0.31
CHD3-204ENST00000439235 BVES-AS1Q5T3Y7 98 aa13.13□□□□□ -0.31
CHD3-204ENST00000439235 Q6ZSA8 131 aa13.13□□□□□ -0.31
CHD3-204ENST00000439235 Q8NDZ9 215 aa13.13□□□□□ -0.31
CHD3-204ENST00000439235 TRBV10-2A0A0K0K1G8 114 aa13.12□□□□□ -0.31
CHD3-204ENST00000439235 A0A1W2PNN7 141 aa13.12□□□□□ -0.31
CHD3-204ENST00000439235 NCR3O14931 201 aa13.11□□□□□ -0.31
CHD3-204ENST00000439235 PKD1P98161 4303 aa13.11□□□□□ -0.31
CHD3-204ENST00000439235 HECTD4Q9Y4D8 3996 aa13.11□□□□□ -0.31
CHD3-204ENST00000439235 A0A087WYN8 130 aa13.1□□□□□ -0.31
CHD3-204ENST00000439235 M0R378 163 aa13.1□□□□□ -0.31
CHD3-204ENST00000439235 M0QXV9 152 aa13.09□□□□□ -0.31
CHD3-204ENST00000439235 PRR3P79522 188 aaKnown RBP13.09□□□□□ -0.31
CHD3-204ENST00000439235 KRTAP7-1Q8IUC3 87 aa13.09□□□□□ -0.31
CHD3-204ENST00000439235 PLAC8Q9NZF1 115 aa13.09□□□□□ -0.31
CHD3-204ENST00000439235 FAM30AQ9NZY2 134 aa13.09□□□□□ -0.31
CHD3-204ENST00000439235 C22orf24Q9Y442 160 aa13.09□□□□□ -0.31
CHD3-204ENST00000439235 IGKV2-28A0A075B6P5 120 aa13.08□□□□□ -0.32
CHD3-204ENST00000439235 IGKV2D-28P01615 120 aa13.08□□□□□ -0.32
CHD3-204ENST00000439235 TRAV13-2A0A0B4J235 113 aa13.07□□□□□ -0.32
CHD3-204ENST00000439235 A0A0B4J2C4 111 aa13.07□□□□□ -0.32
CHD3-204ENST00000439235 EPM2AB3EWF7 344 aa13.07□□□□□ -0.32
CHD3-204ENST00000439235 LBHQ53QV2 105 aaPredicted RBP13.07□□□□□ -0.32
CHD3-204ENST00000439235 MRPL55Q7Z7F7 128 aaKnown RBP13.07□□□□□ -0.32
CHD3-204ENST00000439235 RAB37Q96AX2 223 aa13.07□□□□□ -0.32
CHD3-204ENST00000439235 NHP2Q9NX24 153 aaKnown RBP13.07□□□□□ -0.32
CHD3-204ENST00000439235 PCLOQ9Y6V0 5065 aa13.07□□□□□ -0.32
CHD3-204ENST00000439235 A6NDN8 102 aa13.06□□□□□ -0.32
CHD3-204ENST00000439235 CFC1BP0CG36 223 aa13.06□□□□□ -0.32
CHD3-204ENST00000439235 CFC1P0CG37 223 aa13.06□□□□□ -0.32
CHD3-204ENST00000439235 BATFQ16520 125 aa13.06□□□□□ -0.32
CHD3-204ENST00000439235 S100A7L2Q5SY68 101 aa13.06□□□□□ -0.32
CHD3-204ENST00000439235 DNAH5Q8TE73 4624 aa13.06□□□□□ -0.32
CHD3-204ENST00000439235 C7orf33Q8WU49 177 aa13.05□□□□□ -0.32
CHD3-204ENST00000439235 SCXQ7RTU7 201 aa13.04□□□□□ -0.32
CHD3-204ENST00000439235 LINC00337Q8N6G1 96 aa13.04□□□□□ -0.32
CHD3-204ENST00000439235 OR13C6PQ8NH95 151 aa13.04□□□□□ -0.32
CHD3-204ENST00000439235 A0A1B0GWB2 263 aa13.03□□□□□ -0.32
CHD3-204ENST00000439235 TMEM126AQ9H061 195 aa13.03□□□□□ -0.32
CHD3-204ENST00000439235 GAGE10A6NGK3 116 aa13.02□□□□□ -0.33
CHD3-204ENST00000439235 CIRBP-AS1Q8TBR5 109 aa13.02□□□□□ -0.33
CHD3-204ENST00000439235 PHF5AQ7RTV0 110 aaKnown RBP13.01□□□□□ -0.33
CHD3-204ENST00000439235 LINC00167Q96N53 147 aa13.01□□□□□ -0.33
CHD3-204ENST00000439235 CBY1Q9Y3M2 126 aa13.01□□□□□ -0.33
CHD3-204ENST00000439235 K7ERJ3 54 aa13□□□□□ -0.33
CHD3-204ENST00000439235 IGLV6-57P01721 117 aa13□□□□□ -0.33
CHD3-204ENST00000439235 RPL13AP40429 203 aaKnown RBP13□□□□□ -0.33
CHD3-204ENST00000439235 UBE2BP63146 152 aa13□□□□□ -0.33
CHD3-204ENST00000439235 PRO1854Q9UHT4 67 aa13□□□□□ -0.33
CHD3-204ENST00000439235 TRBV10-3A0A0K0K1G6 114 aa12.99□□□□□ -0.33
CHD3-204ENST00000439235 SNHG12Q9BXW3 62 aa12.99□□□□□ -0.33
CHD3-204ENST00000439235 IGLV1-50A0A075B6I6 118 aa12.97□□□□□ -0.33
CHD3-204ENST00000439235 RYR1P21817 5038 aa12.97□□□□□ -0.33
CHD3-204ENST00000439235 RPL37AP8A6NKH3 93 aa12.96□□□□□ -0.33
CHD3-204ENST00000439235 HAMPP81172 84 aa12.96□□□□□ -0.33
CHD3-204ENST00000439235 TRAV23DV6A0A075B6W5 121 aa12.95□□□□□ -0.34
CHD3-204ENST00000439235 H7C2G1 150 aa12.94□□□□□ -0.34
CHD3-204ENST00000439235 PRYO14603 147 aa12.94□□□□□ -0.34
CHD3-204ENST00000439235 Q1RN00 199 aa12.94□□□□□ -0.34
CHD3-204ENST00000439235 DNAH8Q96JB1 4490 aa12.94□□□□□ -0.34
CHD3-204ENST00000439235 KCNQ1DNQ9H478 68 aa12.93□□□□□ -0.34
CHD3-204ENST00000439235 DYNC1H1Q14204 4646 aaKnown RBP12.93□□□□□ -0.34
CHD3-204ENST00000439235 XGP55808 180 aa12.92□□□□□ -0.34
CHD3-204ENST00000439235 COL5A1-AS1Q5SY13 56 aa12.9□□□□□ -0.34
CHD3-204ENST00000439235 SMIM11BQ8TCY0 68 aa12.9□□□□□ -0.34
CHD3-204ENST00000439235 TSPAN13O95857 204 aa12.89□□□□□ -0.35
CHD3-204ENST00000439235 REG3GQ6UW15 175 aa12.89□□□□□ -0.35
CHD3-204ENST00000439235 DIRC1Q969H9 104 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms