RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 OBSCN-AS1Q96MR7 158 aa6.85□□□□□ -1.31
USP54-205ENST00000424265 C11orf72Q8NBR9 251 aa6.84□□□□□ -1.31
USP54-205ENST00000424265 Q6ZRP5 223 aa6.84□□□□□ -1.31
USP54-205ENST00000424265 C1orf64Q8NEQ6 169 aa6.84□□□□□ -1.31
USP54-205ENST00000424265 C2CD3Q4AC94 2353 aa6.84□□□□□ -1.32
USP54-205ENST00000424265 IGHV3-38A0A0C4DH36 116 aa6.83□□□□□ -1.32
USP54-205ENST00000424265 PSCAO43653 123 aa6.83□□□□□ -1.32
USP54-205ENST00000424265 KRTAP10-3P60369 221 aa6.83□□□□□ -1.32
USP54-205ENST00000424265 FN1P02751 2386 aaKnown RBP6.83□□□□□ -1.32
USP54-205ENST00000424265 SORL1Q92673 2214 aa6.83□□□□□ -1.32
USP54-205ENST00000424265 FAM30AQ9NZY2 134 aa6.83□□□□□ -1.32
USP54-205ENST00000424265 LINC00337Q8N6G1 96 aa6.83□□□□□ -1.32
USP54-205ENST00000424265 H3BQ85 93 aa6.82□□□□□ -1.32
USP54-205ENST00000424265 DEFB4AO15263 64 aa6.82□□□□□ -1.32
USP54-205ENST00000424265 VCANP13611 3396 aa6.82□□□□□ -1.32
USP54-205ENST00000424265 NUPR2A6NF83 97 aa6.82□□□□□ -1.32
USP54-205ENST00000424265 NTM-AS1Q6ZSK4 140 aa6.82□□□□□ -1.32
USP54-205ENST00000424265 Q8N814 137 aa6.82□□□□□ -1.32
USP54-205ENST00000424265 ANGP03950 147 aaKnown RBP6.82□□□□□ -1.32
USP54-205ENST00000424265 EGFEM1PQ0D2K5 195 aa6.82□□□□□ -1.32
USP54-205ENST00000424265 DMXL2Q8TDJ6 3036 aa6.81□□□□□ -1.32
USP54-205ENST00000424265 UBR5O95071 2799 aaPredicted RBP6.81□□□□□ -1.32
USP54-205ENST00000424265 C22orf24Q9Y442 160 aa6.81□□□□□ -1.32
USP54-205ENST00000424265 NDUFB1O75438 58 aa6.81□□□□□ -1.32
USP54-205ENST00000424265 TRBV6-8A0A0A6YYG3 113 aa6.81□□□□□ -1.32
USP54-205ENST00000424265 MP68P56378 58 aa6.81□□□□□ -1.32
USP54-205ENST00000424265 CASC2Q6XLA1 102 aa6.8□□□□□ -1.32
USP54-205ENST00000424265 KIF25-AS1Q9Y6Z4 181 aa6.8□□□□□ -1.32
USP54-205ENST00000424265 KMT2BQ9UMN6 2715 aaPredicted RBP6.8□□□□□ -1.32
USP54-205ENST00000424265 PRR26Q8N8Z3 221 aa6.8□□□□□ -1.32
USP54-205ENST00000424265 CHCHD7Q9BUK0 85 aa6.8□□□□□ -1.32
USP54-205ENST00000424265 CYP4F30PQ9H0H9 118 aa6.8□□□□□ -1.32
USP54-205ENST00000424265 DIRC1Q969H9 104 aa6.79□□□□□ -1.32
USP54-205ENST00000424265 Q6ZTC4 211 aa6.79□□□□□ -1.32
USP54-205ENST00000424265 A0A0J9YWU9 116 aa6.79□□□□□ -1.32
USP54-205ENST00000424265 ZNF575Q86XF7 245 aa6.79□□□□□ -1.32
USP54-205ENST00000424265 CELA1Q9UNI1 258 aa6.78□□□□□ -1.32
USP54-205ENST00000424265 A0A096LPF7 62 aa6.78□□□□□ -1.32
USP54-205ENST00000424265 LELP1Q5T871 98 aa6.78□□□□□ -1.32
USP54-205ENST00000424265 Q6ZQT0 140 aa6.78□□□□□ -1.32
USP54-205ENST00000424265 FRYQ5TBA9 3013 aa6.77□□□□□ -1.33
USP54-205ENST00000424265 PHF5AQ7RTV0 110 aaKnown RBP6.77□□□□□ -1.33
USP54-205ENST00000424265 C19orf73Q9NVV2 129 aa6.77□□□□□ -1.33
USP54-205ENST00000424265 FRYLO94915 3013 aa6.77□□□□□ -1.33
USP54-205ENST00000424265 BAHCC1Q9P281 2608 aa6.77□□□□□ -1.33
USP54-205ENST00000424265 H3BNG1 76 aa6.77□□□□□ -1.33
USP54-205ENST00000424265 KPRPQ5T749 579 aaPredicted RBP6.77□□□□□ -1.33
USP54-205ENST00000424265 B9D2Q9BPU9 175 aa6.77□□□□□ -1.33
USP54-205ENST00000424265 FLNCQ14315 2725 aa6.76□□□□□ -1.33
USP54-205ENST00000424265 LINC00315P59091 139 aa6.76□□□□□ -1.33
USP54-205ENST00000424265 SMIM1B2RUZ4 78 aa6.76□□□□□ -1.33
USP54-205ENST00000424265 C16orf90A8MZG2 172 aa6.75□□□□□ -1.33
USP54-205ENST00000424265 C14orf177Q52M58 125 aa6.75□□□□□ -1.33
USP54-205ENST00000424265 COX6A2Q02221 97 aa6.75□□□□□ -1.33
USP54-205ENST00000424265 ITPR1Q14643 2758 aa6.75□□□□□ -1.33
USP54-205ENST00000424265 LOC110117498A0A087WWA1 95 aa6.75□□□□□ -1.33
USP54-205ENST00000424265 ZNF706Q9Y5V0 76 aaPredicted RBP6.74□□□□□ -1.33
USP54-205ENST00000424265 X6R8D5 127 aa6.74□□□□□ -1.33
USP54-205ENST00000424265 CENPEQ02224 2701 aa6.74□□□□□ -1.33
USP54-205ENST00000424265 DNAH14Q0VDD8 3507 aa6.74□□□□□ -1.33
USP54-205ENST00000424265 HIGD2BQ4VC39 106 aa6.74□□□□□ -1.33
USP54-205ENST00000424265 LINC01554Q52M75 96 aa6.74□□□□□ -1.33
USP54-205ENST00000424265 IGKV2D-24A0A075B6R9 120 aa6.74□□□□□ -1.33
USP54-205ENST00000424265 IGLV5-39A0A0G2JS06 123 aa6.74□□□□□ -1.33
USP54-205ENST00000424265 SETD2Q9BYW2 2564 aaPredicted RBP6.74□□□□□ -1.33
USP54-205ENST00000424265 PRM2P04554 102 aa6.73□□□□□ -1.33
USP54-205ENST00000424265 C9orf116Q5BN46 136 aaPredicted RBP6.73□□□□□ -1.33
USP54-205ENST00000424265 Q8N9L7 120 aa6.73□□□□□ -1.33
USP54-205ENST00000424265 LINC00208Q96KT6 92 aa6.72□□□□□ -1.33
USP54-205ENST00000424265 LINC00242Q5T6M2 205 aa6.72□□□□□ -1.33
USP54-205ENST00000424265 Q5VV11 94 aa6.72□□□□□ -1.33
USP54-205ENST00000424265 IGKV2-28A0A075B6P5 120 aa6.72□□□□□ -1.33
USP54-205ENST00000424265 IGKV2D-28P01615 120 aa6.72□□□□□ -1.33
USP54-205ENST00000424265 CDC42SE1Q9NRR8 79 aa6.72□□□□□ -1.33
USP54-205ENST00000424265 C6orf99Q4VX62 202 aa6.71□□□□□ -1.34
USP54-205ENST00000424265 Q8NAQ8 132 aa6.71□□□□□ -1.34
USP54-205ENST00000424265 CSNK1G2-AS1Q8NCQ2 148 aa6.71□□□□□ -1.34
USP54-205ENST00000424265 KRTAP21-3Q3LHN1 58 aa6.71□□□□□ -1.34
USP54-205ENST00000424265 KRTAP10-11P60412 298 aa6.7□□□□□ -1.34
USP54-205ENST00000424265 KLK12Q9UKR0 248 aa6.7□□□□□ -1.34
USP54-205ENST00000424265 IGLV5-45A0A087WSX0 123 aa6.7□□□□□ -1.34
USP54-205ENST00000424265 REG3AQ06141 175 aa6.7□□□□□ -1.34
USP54-205ENST00000424265 MUC7Q8TAX7 377 aa6.69□□□□□ -1.34
USP54-205ENST00000424265 SMIM29Q86T20 159 aa6.69□□□□□ -1.34
USP54-205ENST00000424265 K7EIL1 84 aa6.69□□□□□ -1.34
USP54-205ENST00000424265 SPAG11BQ08648 103 aa6.69□□□□□ -1.34
USP54-205ENST00000424265 ETDCA0A1B0GVM5 59 aa6.68□□□□□ -1.34
USP54-205ENST00000424265 Q6ZQY7 126 aa6.68□□□□□ -1.34
USP54-205ENST00000424265 A6NN06 94 aa6.68□□□□□ -1.34
USP54-205ENST00000424265 RETNLBQ9BQ08 111 aa6.67□□□□□ -1.34
USP54-205ENST00000424265 FREM2Q5SZK8 3169 aa6.67□□□□□ -1.34
USP54-205ENST00000424265 A0A1B0GUV1 79 aa6.67□□□□□ -1.34
USP54-205ENST00000424265 CLPSL2Q6UWE3 100 aa6.67□□□□□ -1.34
USP54-205ENST00000424265 LINC00612Q8N6U2 182 aa6.66□□□□□ -1.34
USP54-205ENST00000424265 USP34Q70CQ2 3546 aa6.66□□□□□ -1.34
USP54-205ENST00000424265 OCR1Q9BZK8 76 aa6.66□□□□□ -1.34
USP54-205ENST00000424265 LOC100131303A0A0U1RQF7 123 aa6.65□□□□□ -1.34
USP54-205ENST00000424265 CAMK2N2Q96S95 79 aa6.65□□□□□ -1.34
USP54-205ENST00000424265 COX7BP24311 80 aa6.65□□□□□ -1.34
USP54-205ENST00000424265 CHCHD10Q8WYQ3 142 aaPredicted RBP6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms