RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 RPL37AP61513 92 aaKnown RBP4.82□□□□□ -1.64
SCN1A-204ENST00000423058 IGF2RP11717 2491 aa4.82□□□□□ -1.64
SCN1A-204ENST00000423058 WWC2-AS2Q96NR7 200 aa4.82□□□□□ -1.64
SCN1A-204ENST00000423058 VPREB1P12018 145 aa4.81□□□□□ -1.64
SCN1A-204ENST00000423058 KRTAP10-9P60411 292 aa4.81□□□□□ -1.64
SCN1A-204ENST00000423058 KIAA0087Q14695 138 aa4.81□□□□□ -1.64
SCN1A-204ENST00000423058 Q6ZPA2 131 aa4.81□□□□□ -1.64
SCN1A-204ENST00000423058 SPINT4Q6UDR6 99 aa4.8□□□□□ -1.64
SCN1A-204ENST00000423058 Q96NJ1 140 aa4.8□□□□□ -1.64
SCN1A-204ENST00000423058 SERTAD4-AS1Q5TG53 156 aa4.8□□□□□ -1.64
SCN1A-204ENST00000423058 PRO0628Q9UI54 55 aa4.79□□□□□ -1.64
SCN1A-204ENST00000423058 CDSNQ15517 529 aa4.79□□□□□ -1.64
SCN1A-204ENST00000423058 NBDYA0A0U1RRE5 68 aa4.79□□□□□ -1.64
SCN1A-204ENST00000423058 C8orf87E5RJ46 101 aa4.78□□□□□ -1.64
SCN1A-204ENST00000423058 ADAMTSL4-AS1Q5T5F5 129 aa4.78□□□□□ -1.64
SCN1A-204ENST00000423058 LINC00167Q96N53 147 aa4.78□□□□□ -1.64
SCN1A-204ENST00000423058 FLG2Q5D862 2391 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-204ENST00000423058 LINC01546A6NGU7 62 aa4.78□□□□□ -1.64
SCN1A-204ENST00000423058 A8MTW9 85 aa4.77□□□□□ -1.65
SCN1A-204ENST00000423058 GAS8-AS1O95177 125 aa4.77□□□□□ -1.65
SCN1A-204ENST00000423058 CRIP3Q6Q6R5 217 aa4.77□□□□□ -1.65
SCN1A-204ENST00000423058 SMIM29Q86T20 159 aa4.77□□□□□ -1.65
SCN1A-204ENST00000423058 PKD1L2Q7Z442 2459 aa4.77□□□□□ -1.65
SCN1A-204ENST00000423058 CHTF8P0CG12 524 aa4.76□□□□□ -1.65
SCN1A-204ENST00000423058 LINC00315P59091 139 aa4.76□□□□□ -1.65
SCN1A-204ENST00000423058 Q6ZSN1 163 aa4.76□□□□□ -1.65
SCN1A-204ENST00000423058 C11orf72Q8NBR9 251 aa4.76□□□□□ -1.65
SCN1A-204ENST00000423058 A0A087WVE0 104 aa4.76□□□□□ -1.65
SCN1A-204ENST00000423058 RBM12B-AS1Q9P1G2 102 aa4.75□□□□□ -1.65
SCN1A-204ENST00000423058 ZNF462Q96JM2 2506 aa4.75□□□□□ -1.65
SCN1A-204ENST00000423058 CRIPTQ9P021 101 aa4.75□□□□□ -1.65
SCN1A-204ENST00000423058 LOC101927531A0A1B0GV80 90 aa4.75□□□□□ -1.65
SCN1A-204ENST00000423058 EPM2AB3EWF7 344 aa4.75□□□□□ -1.65
SCN1A-204ENST00000423058 PHF5AQ7RTV0 110 aaKnown RBP4.75□□□□□ -1.65
SCN1A-204ENST00000423058 ERC2-IT1O76042 136 aa4.75□□□□□ -1.65
SCN1A-204ENST00000423058 TSPEAR-AS2P59090 65 aa4.74□□□□□ -1.65
SCN1A-204ENST00000423058 Q6ZRX8 168 aa4.74□□□□□ -1.65
SCN1A-204ENST00000423058 SPATA3Q8NHX4 192 aa4.74□□□□□ -1.65
SCN1A-204ENST00000423058 COL4A2P08572 1712 aa4.74□□□□□ -1.65
SCN1A-204ENST00000423058 CDIP1Q9H305 208 aa4.74□□□□□ -1.65
SCN1A-204ENST00000423058 NCOR2Q9Y618 2525 aa4.74□□□□□ -1.65
SCN1A-204ENST00000423058 ANKRD11Q6UB99 2663 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-204ENST00000423058 ELOF1P60002 83 aaKnown RBP4.74□□□□□ -1.65
SCN1A-204ENST00000423058 LINC00476Q8WZB0 136 aa4.74□□□□□ -1.65
SCN1A-204ENST00000423058 SETD2Q9BYW2 2564 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-204ENST00000423058 LINC00846Q9NV44 126 aa4.73□□□□□ -1.65
SCN1A-204ENST00000423058 Q9UF83 564 aa4.73□□□□□ -1.65
SCN1A-204ENST00000423058 IGLV8-61A0A075B6I0 122 aa4.72□□□□□ -1.65
SCN1A-204ENST00000423058 GVQW2A0A096LPI5 108 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-204ENST00000423058 LINC00304Q8N9R0 145 aa4.72□□□□□ -1.65
SCN1A-204ENST00000423058 IGHV3OR16-9A0A0B4J2B5 98 aa4.71□□□□□ -1.66
SCN1A-204ENST00000423058 SSBP3-AS1Q7Z2R9 100 aa4.71□□□□□ -1.66
SCN1A-204ENST00000423058 IGLV5-39A0A0G2JS06 123 aa4.71□□□□□ -1.66
SCN1A-204ENST00000423058 DNAH10OSP0CZ25 163 aa4.71□□□□□ -1.66
SCN1A-204ENST00000423058 LOC110117498A0A087WWA1 95 aa4.71□□□□□ -1.66
SCN1A-204ENST00000423058 TRBV7-4A0A0J9YYF1 115 aa4.7□□□□□ -1.66
SCN1A-204ENST00000423058 SPTBN4Q9H254 2564 aa4.7□□□□□ -1.66
SCN1A-204ENST00000423058 CR1P17927 2039 aa4.7□□□□□ -1.66
SCN1A-204ENST00000423058 A8MWP4 228 aa4.7□□□□□ -1.66
SCN1A-204ENST00000423058 APLNQ9ULZ1 77 aa4.7□□□□□ -1.66
SCN1A-204ENST00000423058 ST20-AS1Q8NBB2 130 aa4.7□□□□□ -1.66
SCN1A-204ENST00000423058 CYP4F30PQ9H0H9 118 aa4.7□□□□□ -1.66
SCN1A-204ENST00000423058 LINC00588Q9Y4M8 146 aa4.69□□□□□ -1.66
SCN1A-204ENST00000423058 LINC00336Q6ZUF6 198 aa4.69□□□□□ -1.66
SCN1A-204ENST00000423058 UQCR11O14957 56 aa4.68□□□□□ -1.66
SCN1A-204ENST00000423058 MRPL34Q9BQ48 92 aaKnown RBP4.68□□□□□ -1.66
SCN1A-204ENST00000423058 LINC01600Q96MT4 127 aa4.68□□□□□ -1.66
SCN1A-204ENST00000423058 KRTAP24-1Q3LI83 254 aa4.67□□□□□ -1.66
SCN1A-204ENST00000423058 Q6ZQT0 140 aa4.67□□□□□ -1.66
SCN1A-204ENST00000423058 IGLV5-37A0A075B6J1 123 aa4.66□□□□□ -1.66
SCN1A-204ENST00000423058 Q8NAQ8 132 aa4.66□□□□□ -1.66
SCN1A-204ENST00000423058 IGLV5-45A0A087WSX0 123 aa4.66□□□□□ -1.66
SCN1A-204ENST00000423058 FAM19A4Q96LR4 140 aa4.66□□□□□ -1.66
SCN1A-204ENST00000423058 A0A1W2PPR1 153 aa4.65□□□□□ -1.66
SCN1A-204ENST00000423058 USP9YO00507 2555 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-204ENST00000423058 CHD8Q9HCK8 2581 aa4.64□□□□□ -1.67
SCN1A-204ENST00000423058 ZNF861PO60384 105 aa4.64□□□□□ -1.67
SCN1A-204ENST00000423058 URB1-AS1Q96HZ7 61 aa4.64□□□□□ -1.67
SCN1A-204ENST00000423058 MTORP42345 2549 aa4.63□□□□□ -1.67
SCN1A-204ENST00000423058 LUZP6Q538Z0 58 aa4.63□□□□□ -1.67
SCN1A-204ENST00000423058 OBSCN-AS1Q96MR7 158 aa4.63□□□□□ -1.67
SCN1A-204ENST00000423058 LINC00310P59036 64 aa4.63□□□□□ -1.67
SCN1A-204ENST00000423058 POLQO75417 2590 aa4.63□□□□□ -1.67
SCN1A-204ENST00000423058 BPTFQ12830 3046 aa4.62□□□□□ -1.67
SCN1A-204ENST00000423058 C9orf92A6NGG3 77 aa4.62□□□□□ -1.67
SCN1A-204ENST00000423058 USP24Q9UPU5 2620 aa4.62□□□□□ -1.67
SCN1A-204ENST00000423058 IGLV6-57P01721 117 aa4.62□□□□□ -1.67
SCN1A-204ENST00000423058 MIR22HGQ0VDD5 57 aa4.62□□□□□ -1.67
SCN1A-204ENST00000423058 C10orf142B7Z368 130 aa4.61□□□□□ -1.67
SCN1A-204ENST00000423058 FASNP49327 2511 aaKnown RBP4.61□□□□□ -1.67
SCN1A-204ENST00000423058 COA5Q86WW8 74 aa4.61□□□□□ -1.67
SCN1A-204ENST00000423058 C9orf129Q5T035 196 aaKnown RBP4.6□□□□□ -1.67
SCN1A-204ENST00000423058 A0A1B0GVX0 72 aa4.6□□□□□ -1.67
SCN1A-204ENST00000423058 C9orf163Q8N9P6 203 aa4.6□□□□□ -1.67
SCN1A-204ENST00000423058 A0A096LNJ9 63 aa4.6□□□□□ -1.67
SCN1A-204ENST00000423058 DSCR10P59022 87 aa4.6□□□□□ -1.67
SCN1A-204ENST00000423058 LINC00483Q53H64 154 aa4.6□□□□□ -1.67
SCN1A-204ENST00000423058 FAM168BA1KXE4 195 aa4.59□□□□□ -1.67
SCN1A-204ENST00000423058 CDC42SE1Q9NRR8 79 aa4.59□□□□□ -1.67
SCN1A-204ENST00000423058 K7EQZ3 153 aa4.59□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms