RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 LINC00208Q96KT6 92 aa11.84□□□□□ -0.51
PHRF1-202ENST00000413872 A8MTW9 85 aa11.84□□□□□ -0.51
PHRF1-202ENST00000413872 Q8N3U1 123 aa11.82□□□□□ -0.52
PHRF1-202ENST00000413872 FLNBO75369 2602 aaKnown RBP11.82□□□□□ -0.52
PHRF1-202ENST00000413872 DNAH10OSP0CZ25 163 aa11.81□□□□□ -0.52
PHRF1-202ENST00000413872 GVQW2A0A096LPI5 108 aaPredicted RBP11.8□□□□□ -0.52
PHRF1-202ENST00000413872 A0A1B0GW54 56 aa11.8□□□□□ -0.52
PHRF1-202ENST00000413872 RTL8CO15255 209 aa11.8□□□□□ -0.52
PHRF1-202ENST00000413872 C16orf90A8MZG2 172 aa11.79□□□□□ -0.52
PHRF1-202ENST00000413872 Q9UF83 564 aa11.78□□□□□ -0.52
PHRF1-202ENST00000413872 A0A087WVE0 104 aa11.78□□□□□ -0.52
PHRF1-202ENST00000413872 FAM229AH3BQW9 127 aa11.78□□□□□ -0.52
PHRF1-202ENST00000413872 KIAA0087Q14695 138 aa11.78□□□□□ -0.52
PHRF1-202ENST00000413872 PRRC2CQ9Y520 2896 aaKnown RBP11.77□□□□□ -0.52
PHRF1-202ENST00000413872 SVIPQ8NHG7 77 aa11.77□□□□□ -0.53
PHRF1-202ENST00000413872 Q6ZRP5 223 aa11.76□□□□□ -0.53
PHRF1-202ENST00000413872 HCG22E2RYF7 251 aa11.76□□□□□ -0.53
PHRF1-202ENST00000413872 CXCL6P80162 114 aa11.76□□□□□ -0.53
PHRF1-202ENST00000413872 CSNK1G2-AS1Q8NCQ2 148 aa11.76□□□□□ -0.53
PHRF1-202ENST00000413872 ELOF1P60002 83 aaKnown RBP11.75□□□□□ -0.53
PHRF1-202ENST00000413872 C19orf73Q9NVV2 129 aa11.74□□□□□ -0.53
PHRF1-202ENST00000413872 LINC00846Q9NV44 126 aa11.73□□□□□ -0.53
PHRF1-202ENST00000413872 Q6ZRX8 168 aa11.72□□□□□ -0.53
PHRF1-202ENST00000413872 K7EIL1 84 aa11.72□□□□□ -0.53
PHRF1-202ENST00000413872 CRYGAP11844 174 aa11.72□□□□□ -0.53
PHRF1-202ENST00000413872 H0Y9P7 68 aa11.71□□□□□ -0.53
PHRF1-202ENST00000413872 MOBPQ13875 183 aa11.71□□□□□ -0.53
PHRF1-202ENST00000413872 SPATA3Q8NHX4 192 aa11.71□□□□□ -0.54
PHRF1-202ENST00000413872 SOSTDC1Q6X4U4 206 aa11.7□□□□□ -0.54
PHRF1-202ENST00000413872 DEFB116Q30KQ4 102 aa11.7□□□□□ -0.54
PHRF1-202ENST00000413872 A6NED7 52 aa11.7□□□□□ -0.54
PHRF1-202ENST00000413872 PHF5AQ7RTV0 110 aaKnown RBP11.7□□□□□ -0.54
PHRF1-202ENST00000413872 A0A0U1RQV1 116 aa11.69□□□□□ -0.54
PHRF1-202ENST00000413872 DNAH12Q6ZR08 3092 aa11.69□□□□□ -0.54
PHRF1-202ENST00000413872 HECTD1Q9ULT8 2610 aa11.69□□□□□ -0.54
PHRF1-202ENST00000413872 Q8NBF4 154 aa11.68□□□□□ -0.54
PHRF1-202ENST00000413872 SMIM26A0A096LP01 95 aa11.67□□□□□ -0.54
PHRF1-202ENST00000413872 KRTAP10-11P60412 298 aa11.67□□□□□ -0.54
PHRF1-202ENST00000413872 TRBV7-7A0A0K0K1E9 115 aa11.66□□□□□ -0.54
PHRF1-202ENST00000413872 hDV103S1A0JD37 113 aa11.65□□□□□ -0.54
PHRF1-202ENST00000413872 EPM2AB3EWF7 344 aa11.65□□□□□ -0.54
PHRF1-202ENST00000413872 BCE1O60756 84 aa11.65□□□□□ -0.54
PHRF1-202ENST00000413872 SPACA4Q8TDM5 124 aa11.65□□□□□ -0.54
PHRF1-202ENST00000413872 TP53AIP1Q9HCN2 124 aa11.65□□□□□ -0.54
PHRF1-202ENST00000413872 RETNLBQ9BQ08 111 aa11.64□□□□□ -0.55
PHRF1-202ENST00000413872 PCOTHQ58A44 107 aa11.63□□□□□ -0.55
PHRF1-202ENST00000413872 TMEM254Q8TBM7 123 aa11.63□□□□□ -0.55
PHRF1-202ENST00000413872 KRTAP1-3Q8IUG1 177 aa11.63□□□□□ -0.55
PHRF1-202ENST00000413872 CEP350Q5VT06 3117 aa11.62□□□□□ -0.55
PHRF1-202ENST00000413872 LINC00612Q8N6U2 182 aa11.62□□□□□ -0.55
PHRF1-202ENST00000413872 PLA2G1BP04054 148 aaKnown RBP11.61□□□□□ -0.55
PHRF1-202ENST00000413872 KRTAP10-3P60369 221 aa11.61□□□□□ -0.55
PHRF1-202ENST00000413872 TYMSOSQ8TAI1 123 aa11.61□□□□□ -0.55
PHRF1-202ENST00000413872 LINC00476Q8WZB0 136 aa11.6□□□□□ -0.55
PHRF1-202ENST00000413872 VPREB1P12018 145 aa11.6□□□□□ -0.55
PHRF1-202ENST00000413872 LOC110117498A0A087WWA1 95 aa11.59□□□□□ -0.55
PHRF1-202ENST00000413872 PRR34Q9NV39 138 aa11.59□□□□□ -0.55
PHRF1-202ENST00000413872 FAM218AQ96MZ4 157 aa11.59□□□□□ -0.55
PHRF1-202ENST00000413872 TM2D3Q9BRN9 247 aa11.58□□□□□ -0.56
PHRF1-202ENST00000413872 GIG44P09565 113 aaPredicted RBP11.57□□□□□ -0.56
PHRF1-202ENST00000413872 C1orf64Q8NEQ6 169 aa11.57□□□□□ -0.56
PHRF1-202ENST00000413872 IGLV6-57P01721 117 aa11.56□□□□□ -0.56
PHRF1-202ENST00000413872 CHTF8P0CG12 524 aa11.56□□□□□ -0.56
PHRF1-202ENST00000413872 KRTAP1-1Q07627 177 aa11.56□□□□□ -0.56
PHRF1-202ENST00000413872 Q6ZQT0 140 aa11.55□□□□□ -0.56
PHRF1-202ENST00000413872 IGKV2D-30A0A075B6S6 120 aa11.54□□□□□ -0.56
PHRF1-202ENST00000413872 IGKV2-30P06310 120 aa11.54□□□□□ -0.56
PHRF1-202ENST00000413872 LITAFQ99732 161 aa11.53□□□□□ -0.56
PHRF1-202ENST00000413872 CDIP1Q9H305 208 aa11.53□□□□□ -0.56
PHRF1-202ENST00000413872 UTRNP46939 3433 aa11.53□□□□□ -0.56
PHRF1-202ENST00000413872 RPL37AP61513 92 aaKnown RBP11.52□□□□□ -0.57
PHRF1-202ENST00000413872 SMIM29Q86T20 159 aa11.52□□□□□ -0.57
PHRF1-202ENST00000413872 SPINK1P00995 79 aa11.51□□□□□ -0.57
PHRF1-202ENST00000413872 SMCPP49901 116 aaPredicted RBP11.51□□□□□ -0.57
PHRF1-202ENST00000413872 ST20-AS1Q8NBB2 130 aa11.51□□□□□ -0.57
PHRF1-202ENST00000413872 KCNQ1DNQ9H478 68 aa11.51□□□□□ -0.57
PHRF1-202ENST00000413872 IGLV1-50A0A075B6I6 118 aa11.5□□□□□ -0.57
PHRF1-202ENST00000413872 TRBV7-4A0A0J9YYF1 115 aa11.5□□□□□ -0.57
PHRF1-202ENST00000413872 H3BPC8 53 aa11.49□□□□□ -0.57
PHRF1-202ENST00000413872 MGAM2Q2M2H8 2515 aa11.49□□□□□ -0.57
PHRF1-202ENST00000413872 LINC00313P59037 77 aa11.49□□□□□ -0.57
PHRF1-202ENST00000413872 PRO0461Q9UI25 63 aa11.48□□□□□ -0.57
PHRF1-202ENST00000413872 USP24Q9UPU5 2620 aa11.47□□□□□ -0.57
PHRF1-202ENST00000413872 SERTAD4-AS1Q5TG53 156 aa11.46□□□□□ -0.58
PHRF1-202ENST00000413872 C15orf56Q8N910 161 aa11.46□□□□□ -0.58
PHRF1-202ENST00000413872 A0A087WTM6 91 aa11.45□□□□□ -0.58
PHRF1-202ENST00000413872 FAM168BA1KXE4 195 aa11.44□□□□□ -0.58
PHRF1-202ENST00000413872 C8orf87E5RJ46 101 aa11.44□□□□□ -0.58
PHRF1-202ENST00000413872 TLX1NBP0CAT3 122 aa11.44□□□□□ -0.58
PHRF1-202ENST00000413872 C9orf163Q8N9P6 203 aa11.44□□□□□ -0.58
PHRF1-202ENST00000413872 LINC00336Q6ZUF6 198 aa11.43□□□□□ -0.58
PHRF1-202ENST00000413872 C7orf65Q6ZTY9 151 aa11.43□□□□□ -0.58
PHRF1-202ENST00000413872 LINC00528Q8N1L1 170 aa11.42□□□□□ -0.58
PHRF1-202ENST00000413872 PLA2G2DQ9UNK4 145 aa11.42□□□□□ -0.58
PHRF1-202ENST00000413872 HELZ2Q9BYK8 2649 aaKnown RBP11.42□□□□□ -0.58
PHRF1-202ENST00000413872 ACYP2P14621 99 aa11.41□□□□□ -0.58
PHRF1-202ENST00000413872 J3QL48 77 aa11.4□□□□□ -0.58
PHRF1-202ENST00000413872 SSBP3-AS1Q7Z2R9 100 aa11.4□□□□□ -0.58
PHRF1-202ENST00000413872 APLNQ9ULZ1 77 aa11.4□□□□□ -0.59
PHRF1-202ENST00000413872 TRAV22A0A0B4J277 110 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 176.9 ms