RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 ARL17AQ8IVW1 177 aa13.03□□□□□ -0.32
VSX1-203ENST00000409285 HIGD1BQ9P298 99 aa13.03□□□□□ -0.32
VSX1-203ENST00000409285 PANO1I0J062 215 aa13.02□□□□□ -0.33
VSX1-203ENST00000409285 Q6ZVH6 145 aa13.02□□□□□ -0.33
VSX1-203ENST00000409285 SPANXDQ9BXN6 97 aa13.02□□□□□ -0.33
VSX1-203ENST00000409285 SPANXCQ9NY87 97 aa13.02□□□□□ -0.33
VSX1-203ENST00000409285 PPDPFQ9H3Y8 114 aa13.01□□□□□ -0.33
VSX1-203ENST00000409285 XAGE1AQ9HD64 81 aa13.01□□□□□ -0.33
VSX1-203ENST00000409285 SPANXB1Q9NS25 103 aaPredicted RBP13.01□□□□□ -0.33
VSX1-203ENST00000409285 DAND5Q8N907 189 aa13□□□□□ -0.33
VSX1-203ENST00000409285 FAM30AQ9NZY2 134 aa13□□□□□ -0.33
VSX1-203ENST00000409285 EPM2AB3EWF7 344 aa12.99□□□□□ -0.33
VSX1-203ENST00000409285 PLA2G2DQ9UNK4 145 aa12.99□□□□□ -0.33
VSX1-203ENST00000409285 CTAG1AP78358 180 aa12.97□□□□□ -0.33
VSX1-203ENST00000409285 APOBP04114 4563 aaKnown RBP12.97□□□□□ -0.33
VSX1-203ENST00000409285 HIST1H4GQ99525 98 aa12.97□□□□□ -0.33
VSX1-203ENST00000409285 KIAA1109Q2LD37 5005 aa12.96□□□□□ -0.34
VSX1-203ENST00000409285 IFITM1P13164 125 aa12.96□□□□□ -0.34
VSX1-203ENST00000409285 SRSF9Q13242 221 aaKnown RBP eCLIP12.96□□□□□ -0.34
VSX1-203ENST00000409285 LINC00308Q8TCZ7 52 aa12.96□□□□□ -0.34
VSX1-203ENST00000409285 COPS9Q8WXC6 57 aa12.96□□□□□ -0.34
VSX1-203ENST00000409285 PLAC8Q9NZF1 115 aa12.96□□□□□ -0.34
VSX1-203ENST00000409285 A0A087WYN8 130 aa12.95□□□□□ -0.34
VSX1-203ENST00000409285 HSD52Q0P140 79 aa12.95□□□□□ -0.34
VSX1-203ENST00000409285 SOSTDC1Q6X4U4 206 aa12.95□□□□□ -0.34
VSX1-203ENST00000409285 IGLV5-37A0A075B6J1 123 aa12.93□□□□□ -0.34
VSX1-203ENST00000409285 FAM168BA1KXE4 195 aa12.93□□□□□ -0.34
VSX1-203ENST00000409285 SCXQ7RTU7 201 aa12.93□□□□□ -0.34
VSX1-203ENST00000409285 A0A1W2PNN7 141 aa12.92□□□□□ -0.34
VSX1-203ENST00000409285 KRTAP7-1Q8IUC3 87 aa12.92□□□□□ -0.34
VSX1-203ENST00000409285 CIRBP-AS1Q8TBR5 109 aa12.92□□□□□ -0.34
VSX1-203ENST00000409285 EIF4EBP3O60516 100 aaPredicted RBP12.91□□□□□ -0.34
VSX1-203ENST00000409285 RPL24P83731 157 aaKnown RBP12.91□□□□□ -0.34
VSX1-203ENST00000409285 SERTAD4-AS1Q5TG53 156 aa12.91□□□□□ -0.34
VSX1-203ENST00000409285 NDUFC2O95298 119 aa12.91□□□□□ -0.34
VSX1-203ENST00000409285 VPREB1P12018 145 aa12.91□□□□□ -0.34
VSX1-203ENST00000409285 TAL2Q16559 108 aa12.91□□□□□ -0.34
VSX1-203ENST00000409285 DPH3Q96FX2 82 aa12.91□□□□□ -0.34
VSX1-203ENST00000409285 CDK2AP2O75956 126 aa12.9□□□□□ -0.34
VSX1-203ENST00000409285 NPC2P61916 151 aa12.9□□□□□ -0.34
VSX1-203ENST00000409285 Q8NDZ9 215 aa12.9□□□□□ -0.34
VSX1-203ENST00000409285 FAM19A5Q7Z5A7 132 aaPredicted RBP12.89□□□□□ -0.35
VSX1-203ENST00000409285 HINT1P49773 126 aaPredicted RBP12.88□□□□□ -0.35
VSX1-203ENST00000409285 XGP55808 180 aa12.88□□□□□ -0.35
VSX1-203ENST00000409285 MUSTN1Q8IVN3 82 aa12.88□□□□□ -0.35
VSX1-203ENST00000409285 RYR1P21817 5038 aa12.87□□□□□ -0.35
VSX1-203ENST00000409285 CEND1Q8N111 149 aa12.87□□□□□ -0.35
VSX1-203ENST00000409285 M0QXV9 152 aa12.86□□□□□ -0.35
VSX1-203ENST00000409285 M0R143 59 aa12.86□□□□□ -0.35
VSX1-203ENST00000409285 HSPG2P98160 4391 aa12.86□□□□□ -0.35
VSX1-203ENST00000409285 TRBV10-2A0A0K0K1G8 114 aa12.85□□□□□ -0.35
VSX1-203ENST00000409285 NKAPP1Q8N9T2 125 aa12.85□□□□□ -0.35
VSX1-203ENST00000409285 C22orf24Q9Y442 160 aa12.85□□□□□ -0.35
VSX1-203ENST00000409285 BATFQ16520 125 aa12.85□□□□□ -0.35
VSX1-203ENST00000409285 BVES-AS1Q5T3Y7 98 aa12.85□□□□□ -0.35
VSX1-203ENST00000409285 HERC2O95714 4834 aa12.84□□□□□ -0.35
VSX1-203ENST00000409285 MRPL55Q7Z7F7 128 aaKnown RBP12.84□□□□□ -0.35
VSX1-203ENST00000409285 FXYD2P54710 66 aa12.83□□□□□ -0.36
VSX1-203ENST00000409285 LBHQ53QV2 105 aaPredicted RBP12.82□□□□□ -0.36
VSX1-203ENST00000409285 M0R378 163 aa12.81□□□□□ -0.36
VSX1-203ENST00000409285 HAMPP81172 84 aa12.81□□□□□ -0.36
VSX1-203ENST00000409285 IGKV2-28A0A075B6P5 120 aa12.8□□□□□ -0.36
VSX1-203ENST00000409285 TMEM238LA0A1B0GVL6 79 aa12.8□□□□□ -0.36
VSX1-203ENST00000409285 A6NJY4 79 aa12.8□□□□□ -0.36
VSX1-203ENST00000409285 IGKV2D-28P01615 120 aa12.8□□□□□ -0.36
VSX1-203ENST00000409285 PHF5AQ7RTV0 110 aaKnown RBP12.8□□□□□ -0.36
VSX1-203ENST00000409285 C7orf33Q8WU49 177 aa12.8□□□□□ -0.36
VSX1-203ENST00000409285 A4D1N5 150 aa12.79□□□□□ -0.36
VSX1-203ENST00000409285 PRR3P79522 188 aaKnown RBP12.79□□□□□ -0.36
VSX1-203ENST00000409285 NCR3O14931 201 aa12.78□□□□□ -0.36
VSX1-203ENST00000409285 SNHG12Q9BXW3 62 aa12.78□□□□□ -0.36
VSX1-203ENST00000409285 LINC00167Q96N53 147 aa12.78□□□□□ -0.36
VSX1-203ENST00000409285 VPS13BQ7Z7G8 4022 aa12.77□□□□□ -0.37
VSX1-203ENST00000409285 NHP2Q9NX24 153 aaKnown RBP12.76□□□□□ -0.37
VSX1-203ENST00000409285 IGLV1-50A0A075B6I6 118 aa12.75□□□□□ -0.37
VSX1-203ENST00000409285 IGLV6-57P01721 117 aa12.75□□□□□ -0.37
VSX1-203ENST00000409285 LINC00337Q8N6G1 96 aa12.75□□□□□ -0.37
VSX1-203ENST00000409285 A6NDN8 102 aa12.74□□□□□ -0.37
VSX1-203ENST00000409285 GAGE10A6NGK3 116 aa12.73□□□□□ -0.37
VSX1-203ENST00000409285 TRBV10-3A0A0K0K1G6 114 aa12.72□□□□□ -0.37
VSX1-203ENST00000409285 K7ERJ3 54 aa12.72□□□□□ -0.37
VSX1-203ENST00000409285 UBE2BP63146 152 aa12.72□□□□□ -0.37
VSX1-203ENST00000409285 TMEM126AQ9H061 195 aa12.72□□□□□ -0.37
VSX1-203ENST00000409285 TRAV13-2A0A0B4J235 113 aa12.72□□□□□ -0.37
VSX1-203ENST00000409285 S100A7L2Q5SY68 101 aa12.72□□□□□ -0.37
VSX1-203ENST00000409285 A0A0B4J2C4 111 aa12.71□□□□□ -0.38
VSX1-203ENST00000409285 RPL37AP8A6NKH3 93 aa12.71□□□□□ -0.38
VSX1-203ENST00000409285 CFC1BP0CG36 223 aa12.71□□□□□ -0.38
VSX1-203ENST00000409285 CFC1P0CG37 223 aa12.71□□□□□ -0.38
VSX1-203ENST00000409285 KRTAP11-1Q8IUC1 163 aa12.71□□□□□ -0.38
VSX1-203ENST00000409285 KCNQ1DNQ9H478 68 aa12.71□□□□□ -0.38
VSX1-203ENST00000409285 RAB37Q96AX2 223 aa12.7□□□□□ -0.38
VSX1-203ENST00000409285 CBY1Q9Y3M2 126 aa12.7□□□□□ -0.38
VSX1-203ENST00000409285 A0A1B0GWB2 263 aa12.69□□□□□ -0.38
VSX1-203ENST00000409285 LINC00528Q8N1L1 170 aa12.69□□□□□ -0.38
VSX1-203ENST00000409285 FAT1Q14517 4588 aa12.68□□□□□ -0.38
VSX1-203ENST00000409285 PRYO14603 147 aa12.68□□□□□ -0.38
VSX1-203ENST00000409285 COL5A1-AS1Q5SY13 56 aa12.67□□□□□ -0.38
VSX1-203ENST00000409285 PSORS1C2Q9UIG4 136 aa12.67□□□□□ -0.38
VSX1-203ENST00000409285 SMR3BP02814 79 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms