RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 PCSK5Q92824 1860 aa9.77□□□□□ -0.85
COL4A3-202ENST00000396578 TLN1Q9Y490 2541 aaKnown RBP9.76□□□□□ -0.85
COL4A3-202ENST00000396578 C11orf72Q8NBR9 251 aa9.75□□□□□ -0.85
COL4A3-202ENST00000396578 SPACA4Q8TDM5 124 aa9.75□□□□□ -0.85
COL4A3-202ENST00000396578 SMR3AQ99954 134 aa9.75□□□□□ -0.85
COL4A3-202ENST00000396578 TRAV22A0A0B4J277 110 aa9.75□□□□□ -0.85
COL4A3-202ENST00000396578 LOC110117498A0A087WWA1 95 aa9.74□□□□□ -0.85
COL4A3-202ENST00000396578 CDSNQ15517 529 aa9.74□□□□□ -0.85
COL4A3-202ENST00000396578 Q6ZQT0 140 aa9.74□□□□□ -0.85
COL4A3-202ENST00000396578 SETD2Q9BYW2 2564 aaPredicted RBP9.74□□□□□ -0.85
COL4A3-202ENST00000396578 IGF2RP11717 2491 aa9.73□□□□□ -0.85
COL4A3-202ENST00000396578 IGLV8-61A0A075B6I0 122 aa9.73□□□□□ -0.85
COL4A3-202ENST00000396578 LINC00313P59037 77 aa9.72□□□□□ -0.85
COL4A3-202ENST00000396578 ACANP16112 2415 aa9.72□□□□□ -0.85
COL4A3-202ENST00000396578 SMCPP49901 116 aaPredicted RBP9.72□□□□□ -0.85
COL4A3-202ENST00000396578 IGHV3OR16-9A0A0B4J2B5 98 aa9.72□□□□□ -0.85
COL4A3-202ENST00000396578 ELOF1P60002 83 aaKnown RBP9.72□□□□□ -0.85
COL4A3-202ENST00000396578 ANKRD17O75179 2603 aaKnown RBP9.72□□□□□ -0.85
COL4A3-202ENST00000396578 F8P00451 2351 aa9.71□□□□□ -0.85
COL4A3-202ENST00000396578 KIF25-AS1Q9Y6Z4 181 aa9.71□□□□□ -0.86
COL4A3-202ENST00000396578 LINC00167Q96N53 147 aa9.71□□□□□ -0.86
COL4A3-202ENST00000396578 FAM218AQ96MZ4 157 aa9.7□□□□□ -0.86
COL4A3-202ENST00000396578 TM2D3Q9BRN9 247 aa9.69□□□□□ -0.86
COL4A3-202ENST00000396578 JMJD1CQ15652 2540 aa9.69□□□□□ -0.86
COL4A3-202ENST00000396578 LINC00476Q8WZB0 136 aa9.68□□□□□ -0.86
COL4A3-202ENST00000396578 PRO0461Q9UI25 63 aa9.68□□□□□ -0.86
COL4A3-202ENST00000396578 Q8NBF4 154 aa9.68□□□□□ -0.86
COL4A3-202ENST00000396578 IGLV5-45A0A087WSX0 123 aa9.67□□□□□ -0.86
COL4A3-202ENST00000396578 PKD1L2Q7Z442 2459 aa9.67□□□□□ -0.86
COL4A3-202ENST00000396578 ZNF462Q96JM2 2506 aa9.66□□□□□ -0.86
COL4A3-202ENST00000396578 FHL3Q13643 280 aa9.66□□□□□ -0.86
COL4A3-202ENST00000396578 NHLRC4P0CG21 123 aaPredicted RBP9.66□□□□□ -0.86
COL4A3-202ENST00000396578 Q6ZRX8 168 aa9.66□□□□□ -0.86
COL4A3-202ENST00000396578 SSBP3-AS1Q7Z2R9 100 aa9.65□□□□□ -0.87
COL4A3-202ENST00000396578 USP9XQ93008 2570 aaPredicted RBP9.63□□□□□ -0.87
COL4A3-202ENST00000396578 FAM19A4Q96LR4 140 aa9.62□□□□□ -0.87
COL4A3-202ENST00000396578 CYP4F30PQ9H0H9 118 aa9.62□□□□□ -0.87
COL4A3-202ENST00000396578 LOC101927531A0A1B0GV80 90 aa9.61□□□□□ -0.87
COL4A3-202ENST00000396578 KRTAP10-9P60411 292 aa9.6□□□□□ -0.87
COL4A3-202ENST00000396578 RPL37AP61513 92 aaKnown RBP9.6□□□□□ -0.87
COL4A3-202ENST00000396578 ERC2-IT1O76042 136 aa9.59□□□□□ -0.87
COL4A3-202ENST00000396578 MDFIQ99750 246 aa9.59□□□□□ -0.87
COL4A3-202ENST00000396578 LINC01600Q96MT4 127 aa9.59□□□□□ -0.87
COL4A3-202ENST00000396578 EPM2AB3EWF7 344 aa9.59□□□□□ -0.87
COL4A3-202ENST00000396578 LINC00315P59091 139 aa9.59□□□□□ -0.87
COL4A3-202ENST00000396578 TRBV7-4A0A0J9YYF1 115 aa9.58□□□□□ -0.88
COL4A3-202ENST00000396578 TYMSOSQ8TAI1 123 aa9.58□□□□□ -0.88
COL4A3-202ENST00000396578 COA5Q86WW8 74 aa9.58□□□□□ -0.88
COL4A3-202ENST00000396578 PHF5AQ7RTV0 110 aaKnown RBP9.57□□□□□ -0.88
COL4A3-202ENST00000396578 UQCR11O14957 56 aa9.57□□□□□ -0.88
COL4A3-202ENST00000396578 A8MWP4 228 aa9.57□□□□□ -0.88
COL4A3-202ENST00000396578 C16orf90A8MZG2 172 aa9.57□□□□□ -0.88
COL4A3-202ENST00000396578 CHTF8P0CG12 524 aa9.57□□□□□ -0.88
COL4A3-202ENST00000396578 H3BNG1 76 aa9.56□□□□□ -0.88
COL4A3-202ENST00000396578 PIEZO1Q92508 2521 aa9.56□□□□□ -0.88
COL4A3-202ENST00000396578 Q96NJ1 140 aa9.56□□□□□ -0.88
COL4A3-202ENST00000396578 CRIPTQ9P021 101 aa9.54□□□□□ -0.88
COL4A3-202ENST00000396578 Q6ZRP5 223 aa9.53□□□□□ -0.88
COL4A3-202ENST00000396578 ST20-AS1Q8NBB2 130 aa9.53□□□□□ -0.88
COL4A3-202ENST00000396578 FAM229AH3BQW9 127 aa9.53□□□□□ -0.88
COL4A3-202ENST00000396578 NCOR2Q9Y618 2525 aa9.53□□□□□ -0.88
COL4A3-202ENST00000396578 A8MUN3 132 aa9.52□□□□□ -0.89
COL4A3-202ENST00000396578 K7EQZ3 153 aa9.52□□□□□ -0.89
COL4A3-202ENST00000396578 A0A1W2PPR1 153 aa9.51□□□□□ -0.89
COL4A3-202ENST00000396578 ANKRD11Q6UB99 2663 aaPredicted RBP9.51□□□□□ -0.89
COL4A3-202ENST00000396578 IGLV6-57P01721 117 aa9.51□□□□□ -0.89
COL4A3-202ENST00000396578 MRPL34Q9BQ48 92 aaKnown RBP9.5□□□□□ -0.89
COL4A3-202ENST00000396578 GVQW2A0A096LPI5 108 aaPredicted RBP9.49□□□□□ -0.89
COL4A3-202ENST00000396578 MIR22HGQ0VDD5 57 aa9.49□□□□□ -0.89
COL4A3-202ENST00000396578 RTL8CO15255 209 aa9.49□□□□□ -0.89
COL4A3-202ENST00000396578 CENPFP49454 3210 aa9.46□□□□□ -0.89
COL4A3-202ENST00000396578 CD164Q04900 197 aa9.46□□□□□ -0.89
COL4A3-202ENST00000396578 APLNQ9ULZ1 77 aa9.46□□□□□ -0.89
COL4A3-202ENST00000396578 PRO3102Q9H379 93 aa9.45□□□□□ -0.9
COL4A3-202ENST00000396578 CR1P17927 2039 aa9.45□□□□□ -0.9
COL4A3-202ENST00000396578 USP9YO00507 2555 aaPredicted RBP9.45□□□□□ -0.9
COL4A3-202ENST00000396578 KTN1-AS1Q86SY8 53 aa9.43□□□□□ -0.9
COL4A3-202ENST00000396578 COL4A2P08572 1712 aa9.43□□□□□ -0.9
COL4A3-202ENST00000396578 KLKP1Q107X0 134 aa9.43□□□□□ -0.9
COL4A3-202ENST00000396578 LITAFQ99732 161 aa9.42□□□□□ -0.9
COL4A3-202ENST00000396578 FAM168BA1KXE4 195 aa9.41□□□□□ -0.9
COL4A3-202ENST00000396578 NBDYA0A0U1RRE5 68 aa9.41□□□□□ -0.9
COL4A3-202ENST00000396578 C10orf142B7Z368 130 aa9.4□□□□□ -0.9
COL4A3-202ENST00000396578 LINC00588Q9Y4M8 146 aa9.39□□□□□ -0.91
COL4A3-202ENST00000396578 PRR15Q8IV56 129 aa9.37□□□□□ -0.91
COL4A3-202ENST00000396578 DNAH10OSP0CZ25 163 aa9.37□□□□□ -0.91
COL4A3-202ENST00000396578 MTORP42345 2549 aa9.37□□□□□ -0.91
COL4A3-202ENST00000396578 Q8NAQ8 132 aa9.37□□□□□ -0.91
COL4A3-202ENST00000396578 SPTBN4Q9H254 2564 aa9.37□□□□□ -0.91
COL4A3-202ENST00000396578 CHD8Q9HCK8 2581 aa9.37□□□□□ -0.91
COL4A3-202ENST00000396578 LCA10Q71F78 164 aa9.36□□□□□ -0.91
COL4A3-202ENST00000396578 LINC00336Q6ZUF6 198 aa9.36□□□□□ -0.91
COL4A3-202ENST00000396578 KCNQ1DNQ9H478 68 aa9.36□□□□□ -0.91
COL4A3-202ENST00000396578 IGFL1Q6UW32 110 aa9.34□□□□□ -0.91
COL4A3-202ENST00000396578 BPTFQ12830 3046 aa9.34□□□□□ -0.91
COL4A3-202ENST00000396578 C8orf17Q9NRJ1 99 aa9.34□□□□□ -0.91
COL4A3-202ENST00000396578 IGLV1-50A0A075B6I6 118 aa9.34□□□□□ -0.91
COL4A3-202ENST00000396578 A0A1B0GVX0 72 aa9.33□□□□□ -0.92
COL4A3-202ENST00000396578 DSCR10P59022 87 aa9.33□□□□□ -0.92
COL4A3-202ENST00000396578 C9orf129Q5T035 196 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 126.8 ms