RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 CSNK1G2-AS1Q8NCQ2 148 aa11.13□□□□□ -0.63
PCDH1-203ENST00000394536 CR1P17927 2039 aa11.13□□□□□ -0.63
PCDH1-203ENST00000394536 COX17Q14061 63 aa11.12□□□□□ -0.63
PCDH1-203ENST00000394536 NOTCH1P46531 2555 aa11.12□□□□□ -0.63
PCDH1-203ENST00000394536 MGAM2Q2M2H8 2515 aa11.12□□□□□ -0.63
PCDH1-203ENST00000394536 LY6G6DO95868 133 aa11.12□□□□□ -0.63
PCDH1-203ENST00000394536 SNURFQ9Y675 71 aa11.12□□□□□ -0.63
PCDH1-203ENST00000394536 CELA1Q9UNI1 258 aa11.11□□□□□ -0.63
PCDH1-203ENST00000394536 FAM19A3Q7Z5A8 133 aa11.11□□□□□ -0.63
PCDH1-203ENST00000394536 DPH3Q96FX2 82 aa11.11□□□□□ -0.63
PCDH1-203ENST00000394536 C19orf73Q9NVV2 129 aa11.11□□□□□ -0.63
PCDH1-203ENST00000394536 X6R8D5 127 aa11.11□□□□□ -0.63
PCDH1-203ENST00000394536 LELP1Q5T871 98 aa11.1□□□□□ -0.63
PCDH1-203ENST00000394536 NREPQ16612 68 aa11.1□□□□□ -0.63
PCDH1-203ENST00000394536 MIFP14174 115 aa11.09□□□□□ -0.63
PCDH1-203ENST00000394536 C16orf95Q9H693 158 aa11.09□□□□□ -0.63
PCDH1-203ENST00000394536 ZNF73O43830 326 aaPredicted RBP11.08□□□□□ -0.64
PCDH1-203ENST00000394536 LINC00575Q6W349 94 aa11.07□□□□□ -0.64
PCDH1-203ENST00000394536 IGHV4-30-4P0DP06 118 aa11.07□□□□□ -0.64
PCDH1-203ENST00000394536 MRAPQ8TCY5 172 aa11.07□□□□□ -0.64
PCDH1-203ENST00000394536 RETNQ9HD89 108 aa11.07□□□□□ -0.64
PCDH1-203ENST00000394536 C3orf84H3BNL1 204 aa11.07□□□□□ -0.64
PCDH1-203ENST00000394536 KPRPQ5T749 579 aaPredicted RBP11.07□□□□□ -0.64
PCDH1-203ENST00000394536 ATP5EP2Q5VTU8 51 aa11.07□□□□□ -0.64
PCDH1-203ENST00000394536 CSMD2Q7Z408 3487 aa11.06□□□□□ -0.64
PCDH1-203ENST00000394536 NDUFC2O95298 119 aa11.06□□□□□ -0.64
PCDH1-203ENST00000394536 OXLD1Q5BKU9 147 aa11.06□□□□□ -0.64
PCDH1-203ENST00000394536 LINC01600Q96MT4 127 aa11.06□□□□□ -0.64
PCDH1-203ENST00000394536 C5orf47Q569G3 176 aa11.05□□□□□ -0.64
PCDH1-203ENST00000394536 FAM19A5Q7Z5A7 132 aaPredicted RBP11.05□□□□□ -0.64
PCDH1-203ENST00000394536 TMEM258P61165 79 aa11.04□□□□□ -0.64
PCDH1-203ENST00000394536 PDE6GP18545 87 aa11.04□□□□□ -0.64
PCDH1-203ENST00000394536 NBEAL1Q6ZS30 2694 aa11.03□□□□□ -0.64
PCDH1-203ENST00000394536 WFDC10BQ8IUB3 73 aa11.03□□□□□ -0.64
PCDH1-203ENST00000394536 LINC01561Q8N1V8 128 aa11.03□□□□□ -0.64
PCDH1-203ENST00000394536 ETDCA0A1B0GVM5 59 aa11.02□□□□□ -0.64
PCDH1-203ENST00000394536 UBE2BP63146 152 aa11.02□□□□□ -0.64
PCDH1-203ENST00000394536 KRTAP1-3Q8IUG1 177 aa11.02□□□□□ -0.64
PCDH1-203ENST00000394536 Q6ZVQ6 151 aa11□□□□□ -0.65
PCDH1-203ENST00000394536 CRYGAP11844 174 aa11□□□□□ -0.65
PCDH1-203ENST00000394536 FAM236DA0A1B0GTK5 79 aa11□□□□□ -0.65
PCDH1-203ENST00000394536 FAM236CP0DP71 79 aa11□□□□□ -0.65
PCDH1-203ENST00000394536 KIAA0087Q14695 138 aa11□□□□□ -0.65
PCDH1-203ENST00000394536 RPL37AP8A6NKH3 93 aa10.99□□□□□ -0.65
PCDH1-203ENST00000394536 PRB2P02812 416 aaPredicted RBP10.99□□□□□ -0.65
PCDH1-203ENST00000394536 FUSP35637 526 aaKnown RBP eCLIP10.99□□□□□ -0.65
PCDH1-203ENST00000394536 BPY2O14599 106 aa10.98□□□□□ -0.65
PCDH1-203ENST00000394536 Q6ZTC4 211 aa10.98□□□□□ -0.65
PCDH1-203ENST00000394536 DEFB131BA0A096LNP1 70 aa10.98□□□□□ -0.65
PCDH1-203ENST00000394536 LINC01547P58512 204 aaPredicted RBP10.98□□□□□ -0.65
PCDH1-203ENST00000394536 LYPD5Q6UWN5 251 aa10.98□□□□□ -0.65
PCDH1-203ENST00000394536 Q8N9L7 120 aa10.98□□□□□ -0.65
PCDH1-203ENST00000394536 SYCNQ0VAF6 134 aa10.98□□□□□ -0.65
PCDH1-203ENST00000394536 F8WEM9 126 aa10.97□□□□□ -0.65
PCDH1-203ENST00000394536 PSCAO43653 123 aa10.97□□□□□ -0.65
PCDH1-203ENST00000394536 C6orf48Q9UBA6 75 aa10.97□□□□□ -0.65
PCDH1-203ENST00000394536 C22orf24Q9Y442 160 aa10.97□□□□□ -0.65
PCDH1-203ENST00000394536 HIVEP1P15822 2718 aa10.96□□□□□ -0.65
PCDH1-203ENST00000394536 M0R378 163 aa10.96□□□□□ -0.65
PCDH1-203ENST00000394536 SPATA3Q8NHX4 192 aa10.96□□□□□ -0.65
PCDH1-203ENST00000394536 Q6ZRU5 148 aa10.96□□□□□ -0.65
PCDH1-203ENST00000394536 MUC7Q8TAX7 377 aa10.96□□□□□ -0.65
PCDH1-203ENST00000394536 STAB1Q9NY15 2570 aa10.96□□□□□ -0.66
PCDH1-203ENST00000394536 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.95□□□□□ -0.66
PCDH1-203ENST00000394536 NANOS2P60321 138 aaKnown RBP10.95□□□□□ -0.66
PCDH1-203ENST00000394536 C11orf45Q8TAV5 145 aa10.95□□□□□ -0.66
PCDH1-203ENST00000394536 VPS13CQ709C8 3753 aa10.95□□□□□ -0.66
PCDH1-203ENST00000394536 HRCT1Q6UXD1 115 aa10.95□□□□□ -0.66
PCDH1-203ENST00000394536 KRTAP10-3P60369 221 aa10.94□□□□□ -0.66
PCDH1-203ENST00000394536 H3BQ85 93 aa10.94□□□□□ -0.66
PCDH1-203ENST00000394536 IGKV2-24A0A0C4DH68 120 aa10.92□□□□□ -0.66
PCDH1-203ENST00000394536 RMI2Q96E14 147 aa10.92□□□□□ -0.66
PCDH1-203ENST00000394536 Q6ZQT0 140 aa10.92□□□□□ -0.66
PCDH1-203ENST00000394536 ZFHX3Q15911 3703 aa10.92□□□□□ -0.66
PCDH1-203ENST00000394536 TRAV7A0A075B6U4 112 aa10.91□□□□□ -0.66
PCDH1-203ENST00000394536 EGFEM1PQ0D2K5 195 aa10.91□□□□□ -0.66
PCDH1-203ENST00000394536 M0R2N4 97 aa10.9□□□□□ -0.66
PCDH1-203ENST00000394536 TRAV10A0A0B4J240 114 aa10.9□□□□□ -0.67
PCDH1-203ENST00000394536 A0A0J9YWU9 116 aa10.89□□□□□ -0.67
PCDH1-203ENST00000394536 Q8NAQ8 132 aa10.89□□□□□ -0.67
PCDH1-203ENST00000394536 COL6A5A8TX70 2615 aa10.89□□□□□ -0.67
PCDH1-203ENST00000394536 UBE2DNLQ8IWF7 75 aa10.89□□□□□ -0.67
PCDH1-203ENST00000394536 NDUFC2-KCTD14E9PQ53 114 aa10.88□□□□□ -0.67
PCDH1-203ENST00000394536 BAHCC1Q9P281 2608 aa10.88□□□□□ -0.67
PCDH1-203ENST00000394536 C2orf48Q96LS8 159 aa10.88□□□□□ -0.67
PCDH1-203ENST00000394536 KRTAP1-1Q07627 177 aa10.87□□□□□ -0.67
PCDH1-203ENST00000394536 MPLKIPQ8TAP9 179 aa10.87□□□□□ -0.67
PCDH1-203ENST00000394536 Q8NDZ9 215 aa10.87□□□□□ -0.67
PCDH1-203ENST00000394536 HIGD2AQ9BW72 106 aa10.86□□□□□ -0.67
PCDH1-203ENST00000394536 CYSTM1Q9H1C7 97 aa10.86□□□□□ -0.67
PCDH1-203ENST00000394536 LINC00612Q8N6U2 182 aa10.86□□□□□ -0.67
PCDH1-203ENST00000394536 A0A096LNI7 61 aa10.84□□□□□ -0.67
PCDH1-203ENST00000394536 ESRGQ1W209 222 aa10.84□□□□□ -0.67
PCDH1-203ENST00000394536 IGLV6-57P01721 117 aa10.84□□□□□ -0.67
PCDH1-203ENST00000394536 C4orf26Q17RF5 130 aa10.84□□□□□ -0.67
PCDH1-203ENST00000394536 OBSCN-AS1Q96MR7 158 aa10.83□□□□□ -0.68
PCDH1-203ENST00000394536 FAM30AQ9NZY2 134 aa10.81□□□□□ -0.68
PCDH1-203ENST00000394536 PRR4Q16378 134 aa10.81□□□□□ -0.68
PCDH1-203ENST00000394536 TM2D3Q9BRN9 247 aa10.81□□□□□ -0.68
PCDH1-203ENST00000394536 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms