RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 MALP21145 153 aa6.8□□□□□ -1.32
VPS53-202ENST00000389040 FOXI1Q12951 378 aa6.8□□□□□ -1.32
VPS53-202ENST00000389040 PRR34Q9NV39 138 aa6.8□□□□□ -1.32
VPS53-202ENST00000389040 TRAV13-2A0A0B4J235 113 aa6.8□□□□□ -1.32
VPS53-202ENST00000389040 FAM229AH3BQW9 127 aa6.8□□□□□ -1.32
VPS53-202ENST00000389040 CKS1BP61024 79 aa6.8□□□□□ -1.32
VPS53-202ENST00000389040 CFAP161Q6P656 301 aa6.8□□□□□ -1.32
VPS53-202ENST00000389040 C2orf82Q6UX34 121 aa6.8□□□□□ -1.32
VPS53-202ENST00000389040 CLEC2BQ92478 149 aa6.8□□□□□ -1.32
VPS53-202ENST00000389040 DNAH6Q9C0G6 4158 aa6.79□□□□□ -1.32
VPS53-202ENST00000389040 TRAV8-4A0A0B4J246 113 aa6.79□□□□□ -1.32
VPS53-202ENST00000389040 LST1O00453 97 aa6.79□□□□□ -1.32
VPS53-202ENST00000389040 CRPP02741 224 aa6.79□□□□□ -1.32
VPS53-202ENST00000389040 CXCL5P42830 114 aa6.79□□□□□ -1.32
VPS53-202ENST00000389040 KIAA0087Q14695 138 aa6.79□□□□□ -1.32
VPS53-202ENST00000389040 ANKRD29Q8N6D5 301 aa6.79□□□□□ -1.32
VPS53-202ENST00000389040 PPDPFLQ8WWR9 84 aa6.79□□□□□ -1.32
VPS53-202ENST00000389040 KLK12Q9UKR0 248 aa6.79□□□□□ -1.32
VPS53-202ENST00000389040 IGKV2-28A0A075B6P5 120 aa6.78□□□□□ -1.32
VPS53-202ENST00000389040 TRBV10-2A0A0K0K1G8 114 aa6.78□□□□□ -1.32
VPS53-202ENST00000389040 GAGE12HA6NDE8 117 aa6.78□□□□□ -1.32
VPS53-202ENST00000389040 IGKV2D-28P01615 120 aa6.78□□□□□ -1.32
VPS53-202ENST00000389040 RTL8CO15255 209 aa6.78□□□□□ -1.32
VPS53-202ENST00000389040 LINC00337Q8N6G1 96 aa6.78□□□□□ -1.32
VPS53-202ENST00000389040 LINC01600Q96MT4 127 aa6.78□□□□□ -1.32
VPS53-202ENST00000389040 RYR2Q92736 4967 aa6.77□□□□□ -1.33
VPS53-202ENST00000389040 ENHOQ6UWT2 76 aa6.77□□□□□ -1.33
VPS53-202ENST00000389040 Q6ZRN7 208 aaPredicted RBP6.77□□□□□ -1.33
VPS53-202ENST00000389040 HYDINQ4G0P3 5121 aa6.77□□□□□ -1.33
VPS53-202ENST00000389040 COX17Q14061 63 aa6.76□□□□□ -1.33
VPS53-202ENST00000389040 CARD19Q96LW7 228 aa6.76□□□□□ -1.33
VPS53-202ENST00000389040 UBE2WQ96B02 151 aa6.76□□□□□ -1.33
VPS53-202ENST00000389040 C1orf43Q9BWL3 253 aa6.76□□□□□ -1.33
VPS53-202ENST00000389040 H3BT86 120 aa6.75□□□□□ -1.33
VPS53-202ENST00000389040 RPL28P46779 137 aaKnown RBP6.75□□□□□ -1.33
VPS53-202ENST00000389040 PCP4P48539 62 aa6.75□□□□□ -1.33
VPS53-202ENST00000389040 SPAG11BQ08648 103 aa6.75□□□□□ -1.33
VPS53-202ENST00000389040 PSCAO43653 123 aa6.74□□□□□ -1.33
VPS53-202ENST00000389040 RYR3Q15413 4870 aa6.74□□□□□ -1.33
VPS53-202ENST00000389040 NTN5Q8WTR8 489 aaPredicted RBP6.74□□□□□ -1.33
VPS53-202ENST00000389040 Q9HAA7 133 aa6.74□□□□□ -1.33
VPS53-202ENST00000389040 IGKV2D-24A0A075B6R9 120 aa6.72□□□□□ -1.33
VPS53-202ENST00000389040 C9orf116Q5BN46 136 aaPredicted RBP6.72□□□□□ -1.33
VPS53-202ENST00000389040 SMIM11BQ8TCY0 68 aa6.72□□□□□ -1.33
VPS53-202ENST00000389040 TRACP01848 142 aa6.72□□□□□ -1.33
VPS53-202ENST00000389040 UNQ6190/PRO20217Q6UXQ8 127 aa6.72□□□□□ -1.33
VPS53-202ENST00000389040 TEX49A0A1B0GTD5 131 aa6.71□□□□□ -1.34
VPS53-202ENST00000389040 NDUFC2O95298 119 aa6.71□□□□□ -1.34
VPS53-202ENST00000389040 C14orf177Q52M58 125 aa6.71□□□□□ -1.34
VPS53-202ENST00000389040 C10orf25Q5T742 122 aa6.71□□□□□ -1.34
VPS53-202ENST00000389040 OR13C6PQ8NH95 151 aa6.71□□□□□ -1.34
VPS53-202ENST00000389040 LINC00526Q96FQ7 95 aa6.71□□□□□ -1.34
VPS53-202ENST00000389040 FAM218AQ96MZ4 157 aa6.71□□□□□ -1.34
VPS53-202ENST00000389040 LCE2CQ5TA81 110 aa6.7□□□□□ -1.34
VPS53-202ENST00000389040 A0A087WTM6 91 aa6.7□□□□□ -1.34
VPS53-202ENST00000389040 LRCOL1A6NCL2 159 aa6.7□□□□□ -1.34
VPS53-202ENST00000389040 KRTAP26-1Q6PEX3 210 aa6.7□□□□□ -1.34
VPS53-202ENST00000389040 DNAH2Q9P225 4427 aa6.69□□□□□ -1.34
VPS53-202ENST00000389040 GVQW2A0A096LPI5 108 aaPredicted RBP6.69□□□□□ -1.34
VPS53-202ENST00000389040 H0YGX0 51 aa6.69□□□□□ -1.34
VPS53-202ENST00000389040 SIGMAR1Q99720 223 aa6.69□□□□□ -1.34
VPS53-202ENST00000389040 CDIP1Q9H305 208 aa6.69□□□□□ -1.34
VPS53-202ENST00000389040 A0A1B0GVY2 172 aa6.68□□□□□ -1.34
VPS53-202ENST00000389040 PRR3P79522 188 aaKnown RBP6.68□□□□□ -1.34
VPS53-202ENST00000389040 A0A087WYN8 130 aa6.67□□□□□ -1.34
VPS53-202ENST00000389040 ZNF561-AS1K7EIQ3 104 aa6.67□□□□□ -1.34
VPS53-202ENST00000389040 C6orf48Q9UBA6 75 aa6.67□□□□□ -1.34
VPS53-202ENST00000389040 BAALC-AS2P0C853 105 aa6.66□□□□□ -1.34
VPS53-202ENST00000389040 Q8N814 137 aa6.66□□□□□ -1.34
VPS53-202ENST00000389040 TMEM126AQ9H061 195 aa6.66□□□□□ -1.34
VPS53-202ENST00000389040 DNAL4O96015 105 aa6.66□□□□□ -1.34
VPS53-202ENST00000389040 HIGD2BQ4VC39 106 aa6.66□□□□□ -1.34
VPS53-202ENST00000389040 C15orf56Q8N910 161 aa6.66□□□□□ -1.34
VPS53-202ENST00000389040 Q8NDZ9 215 aa6.66□□□□□ -1.34
VPS53-202ENST00000389040 FRAS1Q86XX4 4008 aa6.65□□□□□ -1.34
VPS53-202ENST00000389040 DNAH10Q8IVF4 4471 aa6.65□□□□□ -1.34
VPS53-202ENST00000389040 NCR3O14931 201 aa6.65□□□□□ -1.34
VPS53-202ENST00000389040 CAMK2N2Q96S95 79 aa6.65□□□□□ -1.34
VPS53-202ENST00000389040 DNAH17Q9UFH2 4485 aa6.64□□□□□ -1.35
VPS53-202ENST00000389040 FAT2Q9NYQ8 4349 aa6.64□□□□□ -1.35
VPS53-202ENST00000389040 USP17L23D6RBM5 183 aa6.64□□□□□ -1.35
VPS53-202ENST00000389040 LECT2O14960 151 aa6.64□□□□□ -1.35
VPS53-202ENST00000389040 S100A7L2Q5SY68 101 aa6.64□□□□□ -1.35
VPS53-202ENST00000389040 C2orf48Q96LS8 159 aa6.64□□□□□ -1.35
VPS53-202ENST00000389040 XGP55808 180 aa6.63□□□□□ -1.35
VPS53-202ENST00000389040 C22orf24Q9Y442 160 aa6.63□□□□□ -1.35
VPS53-202ENST00000389040 F8WDY8 70 aa6.62□□□□□ -1.35
VPS53-202ENST00000389040 SCGB1A1P11684 91 aa6.62□□□□□ -1.35
VPS53-202ENST00000389040 CNBPP62633 177 aaKnown RBP6.62□□□□□ -1.35
VPS53-202ENST00000389040 Q6ZRU5 148 aa6.62□□□□□ -1.35
VPS53-202ENST00000389040 FAM240AA0A1B0GVK7 77 aa6.61□□□□□ -1.35
VPS53-202ENST00000389040 IGLV6-57P01721 117 aa6.61□□□□□ -1.35
VPS53-202ENST00000389040 MT-ATP8P03928 68 aa6.61□□□□□ -1.35
VPS53-202ENST00000389040 XAGE1AQ9HD64 81 aa6.61□□□□□ -1.35
VPS53-202ENST00000389040 IGLV5-52A0A0A0MRZ9 124 aa6.6□□□□□ -1.35
VPS53-202ENST00000389040 A0A1B0GX51 115 aa6.6□□□□□ -1.35
VPS53-202ENST00000389040 RPL18AQ02543 176 aaKnown RBP6.6□□□□□ -1.35
VPS53-202ENST00000389040 LCE2AQ5TA79 106 aaPredicted RBP6.6□□□□□ -1.35
VPS53-202ENST00000389040 PKIGQ9Y2B9 76 aa6.6□□□□□ -1.35
VPS53-202ENST00000389040 C16orf90A8MZG2 172 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms