RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 IGF2RP11717 2491 aa8.22□□□□□ -1.09
VPS13A-205ENST00000376636 COX8CQ7Z4L0 72 aa8.22□□□□□ -1.09
VPS13A-205ENST00000376636 SMCR5Q8TEV8 140 aa8.21□□□□□ -1.09
VPS13A-205ENST00000376636 IGLV1-51P01701 117 aa8.21□□□□□ -1.09
VPS13A-205ENST00000376636 C22orf24Q9Y442 160 aa8.2□□□□□ -1.1
VPS13A-205ENST00000376636 MDFIQ99750 246 aa8.2□□□□□ -1.1
VPS13A-205ENST00000376636 LINC00310P59036 64 aa8.2□□□□□ -1.1
VPS13A-205ENST00000376636 CD164Q04900 197 aa8.2□□□□□ -1.1
VPS13A-205ENST00000376636 ODF3L2Q3SX64 289 aa8.2□□□□□ -1.1
VPS13A-205ENST00000376636 LYPD5Q6UWN5 251 aa8.2□□□□□ -1.1
VPS13A-205ENST00000376636 NHLRC4P0CG21 123 aaPredicted RBP8.19□□□□□ -1.1
VPS13A-205ENST00000376636 C19orf84I3L1E1 186 aa8.19□□□□□ -1.1
VPS13A-205ENST00000376636 ERC2-IT1O76042 136 aa8.19□□□□□ -1.1
VPS13A-205ENST00000376636 Q6ZRU5 148 aa8.19□□□□□ -1.1
VPS13A-205ENST00000376636 MTORP42345 2549 aa8.18□□□□□ -1.1
VPS13A-205ENST00000376636 URB1-AS1Q96HZ7 61 aa8.18□□□□□ -1.1
VPS13A-205ENST00000376636 POLQO75417 2590 aa8.17□□□□□ -1.1
VPS13A-205ENST00000376636 Q8NBF4 154 aa8.17□□□□□ -1.1
VPS13A-205ENST00000376636 ZNF580Q9UK33 172 aa8.17□□□□□ -1.1
VPS13A-205ENST00000376636 ELOF1P60002 83 aaKnown RBP8.17□□□□□ -1.1
VPS13A-205ENST00000376636 CRIP3Q6Q6R5 217 aa8.17□□□□□ -1.1
VPS13A-205ENST00000376636 OXLD1Q5BKU9 147 aa8.17□□□□□ -1.1
VPS13A-205ENST00000376636 LUZP6Q538Z0 58 aa8.17□□□□□ -1.1
VPS13A-205ENST00000376636 Q6ZQT0 140 aa8.17□□□□□ -1.1
VPS13A-205ENST00000376636 EDN2P20800 178 aa8.16□□□□□ -1.1
VPS13A-205ENST00000376636 NCOR2Q9Y618 2525 aa8.15□□□□□ -1.1
VPS13A-205ENST00000376636 MUC22E2RYF6 1773 aaPredicted RBP8.15□□□□□ -1.1
VPS13A-205ENST00000376636 IGLV5-39A0A0G2JS06 123 aa8.15□□□□□ -1.1
VPS13A-205ENST00000376636 LINC01546A6NGU7 62 aa8.15□□□□□ -1.1
VPS13A-205ENST00000376636 FAM229AH3BQW9 127 aa8.15□□□□□ -1.1
VPS13A-205ENST00000376636 BRI3O95415 125 aa8.15□□□□□ -1.11
VPS13A-205ENST00000376636 KTN1-AS1Q86SY8 53 aa8.14□□□□□ -1.11
VPS13A-205ENST00000376636 Q6ZRX8 168 aa8.14□□□□□ -1.11
VPS13A-205ENST00000376636 A0A1W2PNU3 283 aaPredicted RBP8.14□□□□□ -1.11
VPS13A-205ENST00000376636 MIR22HGQ0VDD5 57 aa8.14□□□□□ -1.11
VPS13A-205ENST00000376636 TM2D3Q9BRN9 247 aa8.14□□□□□ -1.11
VPS13A-205ENST00000376636 COA5Q86WW8 74 aa8.13□□□□□ -1.11
VPS13A-205ENST00000376636 ANKRD11Q6UB99 2663 aaPredicted RBP8.13□□□□□ -1.11
VPS13A-205ENST00000376636 EPM2AB3EWF7 344 aa8.13□□□□□ -1.11
VPS13A-205ENST00000376636 LINC00476Q8WZB0 136 aa8.12□□□□□ -1.11
VPS13A-205ENST00000376636 APLNQ9ULZ1 77 aa8.12□□□□□ -1.11
VPS13A-205ENST00000376636 KIF25-AS1Q9Y6Z4 181 aa8.11□□□□□ -1.11
VPS13A-205ENST00000376636 CHD8Q9HCK8 2581 aa8.11□□□□□ -1.11
VPS13A-205ENST00000376636 A0A096LNJ9 63 aa8.11□□□□□ -1.11
VPS13A-205ENST00000376636 A8MWP4 228 aa8.11□□□□□ -1.11
VPS13A-205ENST00000376636 TRBV7-4A0A0J9YYF1 115 aa8.1□□□□□ -1.11
VPS13A-205ENST00000376636 LINC01554Q52M75 96 aa8.09□□□□□ -1.11
VPS13A-205ENST00000376636 LINC00167Q96N53 147 aa8.09□□□□□ -1.11
VPS13A-205ENST00000376636 TYMSOSQ8TAI1 123 aa8.09□□□□□ -1.11
VPS13A-205ENST00000376636 Q96NJ1 140 aa8.09□□□□□ -1.11
VPS13A-205ENST00000376636 Q6ZSN1 163 aa8.08□□□□□ -1.12
VPS13A-205ENST00000376636 CR1P17927 2039 aa8.08□□□□□ -1.12
VPS13A-205ENST00000376636 C16orf95Q9H693 158 aa8.08□□□□□ -1.12
VPS13A-205ENST00000376636 IGHV3OR16-9A0A0B4J2B5 98 aa8.08□□□□□ -1.12
VPS13A-205ENST00000376636 CDC42SE1Q9NRR8 79 aa8.08□□□□□ -1.12
VPS13A-205ENST00000376636 USP9YO00507 2555 aaPredicted RBP8.07□□□□□ -1.12
VPS13A-205ENST00000376636 Q6ZRP5 223 aa8.06□□□□□ -1.12
VPS13A-205ENST00000376636 LCA10Q71F78 164 aa8.06□□□□□ -1.12
VPS13A-205ENST00000376636 IGLV5-45A0A087WSX0 123 aa8.05□□□□□ -1.12
VPS13A-205ENST00000376636 C16orf90A8MZG2 172 aa8.05□□□□□ -1.12
VPS13A-205ENST00000376636 USP24Q9UPU5 2620 aa8.05□□□□□ -1.12
VPS13A-205ENST00000376636 WISP2O76076 250 aa8.05□□□□□ -1.12
VPS13A-205ENST00000376636 A8MUN3 132 aa8.04□□□□□ -1.12
VPS13A-205ENST00000376636 H3BNG1 76 aa8.03□□□□□ -1.12
VPS13A-205ENST00000376636 FHL3Q13643 280 aa8.03□□□□□ -1.12
VPS13A-205ENST00000376636 FAM19A4Q96LR4 140 aa8.03□□□□□ -1.12
VPS13A-205ENST00000376636 SRCAPQ6ZRS2 3230 aa8.02□□□□□ -1.12
VPS13A-205ENST00000376636 MRPL34Q9BQ48 92 aaKnown RBP8.02□□□□□ -1.12
VPS13A-205ENST00000376636 FAM218AQ96MZ4 157 aa8.02□□□□□ -1.13
VPS13A-205ENST00000376636 C9orf129Q5T035 196 aaKnown RBP8.02□□□□□ -1.13
VPS13A-205ENST00000376636 SMCPP49901 116 aaPredicted RBP8.01□□□□□ -1.13
VPS13A-205ENST00000376636 KLKP1Q107X0 134 aa8.01□□□□□ -1.13
VPS13A-205ENST00000376636 PRO0461Q9UI25 63 aa8.01□□□□□ -1.13
VPS13A-205ENST00000376636 PRR15Q8IV56 129 aa8□□□□□ -1.13
VPS13A-205ENST00000376636 COX6B2Q6YFQ2 88 aa7.99□□□□□ -1.13
VPS13A-205ENST00000376636 RPL37AP61513 92 aaKnown RBP7.99□□□□□ -1.13
VPS13A-205ENST00000376636 K7EQZ3 153 aa7.99□□□□□ -1.13
VPS13A-205ENST00000376636 ST20-AS1Q8NBB2 130 aa7.99□□□□□ -1.13
VPS13A-205ENST00000376636 GVQW2A0A096LPI5 108 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-205ENST00000376636 BPTFQ12830 3046 aa7.96□□□□□ -1.14
VPS13A-205ENST00000376636 CHTF8P0CG12 524 aa7.96□□□□□ -1.14
VPS13A-205ENST00000376636 IGLV6-57P01721 117 aa7.95□□□□□ -1.14
VPS13A-205ENST00000376636 RTL8CO15255 209 aa7.95□□□□□ -1.14
VPS13A-205ENST00000376636 LINC00483Q53H64 154 aa7.95□□□□□ -1.14
VPS13A-205ENST00000376636 PRO3102Q9H379 93 aa7.95□□□□□ -1.14
VPS13A-205ENST00000376636 PHF5AQ7RTV0 110 aaKnown RBP7.95□□□□□ -1.14
VPS13A-205ENST00000376636 FASNP49327 2511 aaKnown RBP7.95□□□□□ -1.14
VPS13A-205ENST00000376636 AVPP01185 164 aa7.94□□□□□ -1.14
VPS13A-205ENST00000376636 SMR3AQ99954 134 aa7.91□□□□□ -1.14
VPS13A-205ENST00000376636 SPANXA2-OT1Q8N9U9 137 aa7.91□□□□□ -1.14
VPS13A-205ENST00000376636 CSNK1G2-AS1Q8NCQ2 148 aa7.9□□□□□ -1.14
VPS13A-205ENST00000376636 LINC00336Q6ZUF6 198 aa7.9□□□□□ -1.14
VPS13A-205ENST00000376636 PRRC2CQ9Y520 2896 aaKnown RBP7.9□□□□□ -1.14
VPS13A-205ENST00000376636 RBM12B-AS1Q9P1G2 102 aa7.9□□□□□ -1.15
VPS13A-205ENST00000376636 A0A1B0GVX0 72 aa7.89□□□□□ -1.15
VPS13A-205ENST00000376636 Q1T7F1 81 aa7.88□□□□□ -1.15
VPS13A-205ENST00000376636 LINC00315P59091 139 aa7.87□□□□□ -1.15
VPS13A-205ENST00000376636 J3QL48 77 aa7.87□□□□□ -1.15
VPS13A-205ENST00000376636 NBDYA0A0U1RRE5 68 aa7.87□□□□□ -1.15
VPS13A-205ENST00000376636 OBSCN-AS1Q96MR7 158 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms