RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ENHOQ6UWT2 76 aa8.28□□□□□ -1.08
CLIP3-201ENST00000360535 KMT2BQ9UMN6 2715 aaPredicted RBP8.28□□□□□ -1.08
CLIP3-201ENST00000360535 CCKP06307 115 aa8.27□□□□□ -1.09
CLIP3-201ENST00000360535 FAM19A1Q7Z5A9 133 aa8.27□□□□□ -1.09
CLIP3-201ENST00000360535 CYSRT1A8MQ03 144 aa8.27□□□□□ -1.09
CLIP3-201ENST00000360535 C5orf47Q569G3 176 aa8.27□□□□□ -1.09
CLIP3-201ENST00000360535 LINC01561Q8N1V8 128 aa8.27□□□□□ -1.09
CLIP3-201ENST00000360535 USP17L23D6RBM5 183 aa8.27□□□□□ -1.09
CLIP3-201ENST00000360535 TMEM256-PLSCR3K7ERE1 68 aa8.27□□□□□ -1.09
CLIP3-201ENST00000360535 Q6JHZ5 121 aa8.26□□□□□ -1.09
CLIP3-201ENST00000360535 LINC00612Q8N6U2 182 aa8.26□□□□□ -1.09
CLIP3-201ENST00000360535 HIGD2BQ4VC39 106 aa8.25□□□□□ -1.09
CLIP3-201ENST00000360535 OBSCN-AS1Q96MR7 158 aa8.25□□□□□ -1.09
CLIP3-201ENST00000360535 C2orf48Q96LS8 159 aa8.25□□□□□ -1.09
CLIP3-201ENST00000360535 LYRM9A8MSI8 78 aa8.25□□□□□ -1.09
CLIP3-201ENST00000360535 INAFM1C9JVW0 142 aa8.24□□□□□ -1.09
CLIP3-201ENST00000360535 JMJD7-PLA2G4BH0Y9G9 81 aa8.24□□□□□ -1.09
CLIP3-201ENST00000360535 HAMPP81172 84 aa8.24□□□□□ -1.09
CLIP3-201ENST00000360535 M0R2N4 97 aa8.24□□□□□ -1.09
CLIP3-201ENST00000360535 Q6ZQY7 126 aa8.24□□□□□ -1.09
CLIP3-201ENST00000360535 NSD1Q96L73 2696 aaPredicted RBP8.23□□□□□ -1.09
CLIP3-201ENST00000360535 C9orf66Q5T8R8 295 aa8.22□□□□□ -1.09
CLIP3-201ENST00000360535 UBL5Q9BZL1 73 aa8.22□□□□□ -1.09
CLIP3-201ENST00000360535 RBM3P98179 157 aaKnown RBP8.22□□□□□ -1.09
CLIP3-201ENST00000360535 APOC4P55056 127 aa8.22□□□□□ -1.09
CLIP3-201ENST00000360535 COX17Q14061 63 aa8.22□□□□□ -1.09
CLIP3-201ENST00000360535 NDUFC2O95298 119 aa8.21□□□□□ -1.09
CLIP3-201ENST00000360535 GHRHP01286 108 aa8.21□□□□□ -1.09
CLIP3-201ENST00000360535 LINC00575Q6W349 94 aa8.21□□□□□ -1.09
CLIP3-201ENST00000360535 TRBV10-3A0A0K0K1G6 114 aa8.21□□□□□ -1.1
CLIP3-201ENST00000360535 SPART-AS1P0CW21 52 aa8.21□□□□□ -1.1
CLIP3-201ENST00000360535 HRCT1Q6UXD1 115 aa8.21□□□□□ -1.1
CLIP3-201ENST00000360535 SERP2Q8N6R1 65 aa8.21□□□□□ -1.1
CLIP3-201ENST00000360535 F8P00451 2351 aa8.2□□□□□ -1.1
CLIP3-201ENST00000360535 SCXQ7RTU7 201 aa8.2□□□□□ -1.1
CLIP3-201ENST00000360535 RETNQ9HD89 108 aa8.2□□□□□ -1.1
CLIP3-201ENST00000360535 CRYGAP11844 174 aa8.19□□□□□ -1.1
CLIP3-201ENST00000360535 C4orf26Q17RF5 130 aa8.19□□□□□ -1.1
CLIP3-201ENST00000360535 UPK3BQ9BT76 320 aa8.19□□□□□ -1.1
CLIP3-201ENST00000360535 Q8NAQ8 132 aa8.18□□□□□ -1.1
CLIP3-201ENST00000360535 ZNF561-AS1K7EIQ3 104 aa8.18□□□□□ -1.1
CLIP3-201ENST00000360535 LELP1Q5T871 98 aa8.18□□□□□ -1.1
CLIP3-201ENST00000360535 IGHV4-30-4P0DP06 118 aa8.18□□□□□ -1.1
CLIP3-201ENST00000360535 C6orf48Q9UBA6 75 aa8.18□□□□□ -1.1
CLIP3-201ENST00000360535 WFDC10BQ8IUB3 73 aa8.17□□□□□ -1.1
CLIP3-201ENST00000360535 CAMK2N2Q96S95 79 aa8.17□□□□□ -1.1
CLIP3-201ENST00000360535 LINC00167Q96N53 147 aa8.17□□□□□ -1.1
CLIP3-201ENST00000360535 C20orf197Q8N268 126 aa8.16□□□□□ -1.1
CLIP3-201ENST00000360535 DPH3Q96FX2 82 aa8.16□□□□□ -1.1
CLIP3-201ENST00000360535 NOTCH1P46531 2555 aa8.15□□□□□ -1.1
CLIP3-201ENST00000360535 MIFP14174 115 aa8.15□□□□□ -1.1
CLIP3-201ENST00000360535 LYPD5Q6UWN5 251 aa8.15□□□□□ -1.1
CLIP3-201ENST00000360535 DIRC1Q969H9 104 aa8.15□□□□□ -1.1
CLIP3-201ENST00000360535 TMEM258P61165 79 aa8.14□□□□□ -1.11
CLIP3-201ENST00000360535 Q6ZQT0 140 aa8.14□□□□□ -1.11
CLIP3-201ENST00000360535 STAB1Q9NY15 2570 aa8.14□□□□□ -1.11
CLIP3-201ENST00000360535 TENM3Q9P273 2699 aa8.14□□□□□ -1.11
CLIP3-201ENST00000360535 OXLD1Q5BKU9 147 aa8.14□□□□□ -1.11
CLIP3-201ENST00000360535 OXTP01178 125 aa8.13□□□□□ -1.11
CLIP3-201ENST00000360535 ZNF73O43830 326 aaPredicted RBP8.13□□□□□ -1.11
CLIP3-201ENST00000360535 IGLV6-57P01721 117 aa8.12□□□□□ -1.11
CLIP3-201ENST00000360535 DEFB105AQ8NG35 78 aa8.12□□□□□ -1.11
CLIP3-201ENST00000360535 KPRPQ5T749 579 aaPredicted RBP8.12□□□□□ -1.11
CLIP3-201ENST00000360535 Q6ZVQ6 151 aa8.12□□□□□ -1.11
CLIP3-201ENST00000360535 A0A0J9YWU9 116 aa8.11□□□□□ -1.11
CLIP3-201ENST00000360535 COX7BP24311 80 aa8.11□□□□□ -1.11
CLIP3-201ENST00000360535 LINC01547P58512 204 aaPredicted RBP8.11□□□□□ -1.11
CLIP3-201ENST00000360535 MAST4O15021 2626 aa8.11□□□□□ -1.11
CLIP3-201ENST00000360535 Q6ZRU5 148 aa8.11□□□□□ -1.11
CLIP3-201ENST00000360535 IGKV2D-24A0A075B6R9 120 aa8.11□□□□□ -1.11
CLIP3-201ENST00000360535 Q6ZTC4 211 aa8.1□□□□□ -1.11
CLIP3-201ENST00000360535 TRAV10A0A0B4J240 114 aa8.1□□□□□ -1.11
CLIP3-201ENST00000360535 PRR34Q9NV39 138 aa8.1□□□□□ -1.11
CLIP3-201ENST00000360535 SNURFQ9Y675 71 aa8.1□□□□□ -1.11
CLIP3-201ENST00000360535 BAHCC1Q9P281 2608 aa8.1□□□□□ -1.11
CLIP3-201ENST00000360535 MUC7Q8TAX7 377 aa8.09□□□□□ -1.11
CLIP3-201ENST00000360535 RPS28P62857 69 aaKnown RBP8.08□□□□□ -1.12
CLIP3-201ENST00000360535 ATP5EP2Q5VTU8 51 aa8.08□□□□□ -1.12
CLIP3-201ENST00000360535 Q8N9L7 120 aa8.08□□□□□ -1.12
CLIP3-201ENST00000360535 FBN1P35555 2871 aaKnown RBP8.08□□□□□ -1.12
CLIP3-201ENST00000360535 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.07□□□□□ -1.12
CLIP3-201ENST00000360535 C1orf43Q9BWL3 253 aa8.06□□□□□ -1.12
CLIP3-201ENST00000360535 VPREB1P12018 145 aa8.05□□□□□ -1.12
CLIP3-201ENST00000360535 ESRGQ1W209 222 aa8.05□□□□□ -1.12
CLIP3-201ENST00000360535 LOC110117498A0A087WWA1 95 aa8.05□□□□□ -1.12
CLIP3-201ENST00000360535 C3orf84H3BNL1 204 aa8.05□□□□□ -1.12
CLIP3-201ENST00000360535 Q6ZRP5 223 aa8.04□□□□□ -1.12
CLIP3-201ENST00000360535 COL6A5A8TX70 2615 aa8.03□□□□□ -1.12
CLIP3-201ENST00000360535 FAM236DA0A1B0GTK5 79 aa8.03□□□□□ -1.12
CLIP3-201ENST00000360535 RPL37AP8A6NKH3 93 aa8.03□□□□□ -1.12
CLIP3-201ENST00000360535 FAM236CP0DP71 79 aa8.03□□□□□ -1.12
CLIP3-201ENST00000360535 RMI2Q96E14 147 aa8.03□□□□□ -1.12
CLIP3-201ENST00000360535 ELOF1P60002 83 aaKnown RBP8.03□□□□□ -1.12
CLIP3-201ENST00000360535 C15orf56Q8N910 161 aa8.03□□□□□ -1.12
CLIP3-201ENST00000360535 M0R378 163 aa8.02□□□□□ -1.12
CLIP3-201ENST00000360535 Q5XG85 94 aa8.02□□□□□ -1.12
CLIP3-201ENST00000360535 GVQW2A0A096LPI5 108 aaPredicted RBP8.02□□□□□ -1.13
CLIP3-201ENST00000360535 NKAPP1Q8N9T2 125 aa8.02□□□□□ -1.13
CLIP3-201ENST00000360535 NDUFC2-KCTD14E9PQ53 114 aa8.01□□□□□ -1.13
CLIP3-201ENST00000360535 EGFEM1PQ0D2K5 195 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms