RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 A0A087WSZ3 146 aa10.14□□□□□ -0.79
COL17A1-201ENST00000353479 FAM30AQ9NZY2 134 aa10.14□□□□□ -0.79
COL17A1-201ENST00000353479 C19orf73Q9NVV2 129 aa10.14□□□□□ -0.79
COL17A1-201ENST00000353479 J3KT08 172 aa10.14□□□□□ -0.79
COL17A1-201ENST00000353479 ITPR3Q14573 2671 aa10.13□□□□□ -0.79
COL17A1-201ENST00000353479 C3orf22Q8N5N4 141 aa10.13□□□□□ -0.79
COL17A1-201ENST00000353479 SNURFQ9Y675 71 aa10.13□□□□□ -0.79
COL17A1-201ENST00000353479 ZNF292O60281 2723 aa10.12□□□□□ -0.79
COL17A1-201ENST00000353479 IGHV6-1A0A0B4J1U7 121 aa10.12□□□□□ -0.79
COL17A1-201ENST00000353479 BRK1Q8WUW1 75 aa10.12□□□□□ -0.79
COL17A1-201ENST00000353479 BPTFQ12830 3046 aa10.12□□□□□ -0.79
COL17A1-201ENST00000353479 GIG44P09565 113 aaPredicted RBP10.12□□□□□ -0.79
COL17A1-201ENST00000353479 RTL8CO15255 209 aa10.12□□□□□ -0.79
COL17A1-201ENST00000353479 FAM240AA0A1B0GVK7 77 aa10.11□□□□□ -0.79
COL17A1-201ENST00000353479 SOSTDC1Q6X4U4 206 aa10.11□□□□□ -0.79
COL17A1-201ENST00000353479 DEFB116Q30KQ4 102 aa10.1□□□□□ -0.79
COL17A1-201ENST00000353479 SERP2Q8N6R1 65 aa10.1□□□□□ -0.79
COL17A1-201ENST00000353479 CFAP46Q8IYW2 2715 aa10.1□□□□□ -0.79
COL17A1-201ENST00000353479 V9GYY9 64 aa10.1□□□□□ -0.79
COL17A1-201ENST00000353479 MGAM2Q2M2H8 2515 aa10.1□□□□□ -0.79
COL17A1-201ENST00000353479 A0A0U1RQV1 116 aa10.1□□□□□ -0.79
COL17A1-201ENST00000353479 DNAH10OSP0CZ25 163 aa10.1□□□□□ -0.79
COL17A1-201ENST00000353479 CENPEQ02224 2701 aa10.09□□□□□ -0.79
COL17A1-201ENST00000353479 PHF5AQ7RTV0 110 aaKnown RBP10.09□□□□□ -0.79
COL17A1-201ENST00000353479 FAM236DA0A1B0GTK5 79 aa10.09□□□□□ -0.79
COL17A1-201ENST00000353479 FAM236CP0DP71 79 aa10.09□□□□□ -0.79
COL17A1-201ENST00000353479 USP24Q9UPU5 2620 aa10.08□□□□□ -0.8
COL17A1-201ENST00000353479 A0A087WVE0 104 aa10.08□□□□□ -0.8
COL17A1-201ENST00000353479 KIAA0087Q14695 138 aa10.08□□□□□ -0.8
COL17A1-201ENST00000353479 MGAQ8IWI9 3026 aa10.07□□□□□ -0.8
COL17A1-201ENST00000353479 GVQW2A0A096LPI5 108 aaPredicted RBP10.07□□□□□ -0.8
COL17A1-201ENST00000353479 PRR4Q16378 134 aa10.07□□□□□ -0.8
COL17A1-201ENST00000353479 UNC80Q8N2C7 3258 aa10.06□□□□□ -0.8
COL17A1-201ENST00000353479 C16orf90A8MZG2 172 aa10.04□□□□□ -0.8
COL17A1-201ENST00000353479 CHTF8P0CG12 524 aa10.04□□□□□ -0.8
COL17A1-201ENST00000353479 LINC01547P58512 204 aaPredicted RBP10.04□□□□□ -0.8
COL17A1-201ENST00000353479 A0A0C4DFX4 3053 aa10.03□□□□□ -0.8
COL17A1-201ENST00000353479 RETNLBQ9BQ08 111 aa10.03□□□□□ -0.8
COL17A1-201ENST00000353479 SPATA3Q8NHX4 192 aa10.03□□□□□ -0.8
COL17A1-201ENST00000353479 Q8N9L7 120 aa10.02□□□□□ -0.81
COL17A1-201ENST00000353479 Q6ZVQ6 151 aa10.02□□□□□ -0.81
COL17A1-201ENST00000353479 Q6ZRP5 223 aa10.02□□□□□ -0.81
COL17A1-201ENST00000353479 MPLKIPQ8TAP9 179 aa10.02□□□□□ -0.81
COL17A1-201ENST00000353479 LINC00846Q9NV44 126 aa10.01□□□□□ -0.81
COL17A1-201ENST00000353479 COX7CP15954 63 aa10.01□□□□□ -0.81
COL17A1-201ENST00000353479 FAM218AQ96MZ4 157 aa10.01□□□□□ -0.81
COL17A1-201ENST00000353479 LAMA2P24043 3122 aaKnown RBP10.01□□□□□ -0.81
COL17A1-201ENST00000353479 ELOF1P60002 83 aaKnown RBP10.01□□□□□ -0.81
COL17A1-201ENST00000353479 MOBPQ13875 183 aa10.01□□□□□ -0.81
COL17A1-201ENST00000353479 LIMD2Q9BT23 127 aa10□□□□□ -0.81
COL17A1-201ENST00000353479 NDUFC1O43677 76 aa10□□□□□ -0.81
COL17A1-201ENST00000353479 TM2D3Q9BRN9 247 aa9.99□□□□□ -0.81
COL17A1-201ENST00000353479 CDH23Q9H251 3354 aa9.99□□□□□ -0.81
COL17A1-201ENST00000353479 LINC00208Q96KT6 92 aa9.99□□□□□ -0.81
COL17A1-201ENST00000353479 Q6ZRX8 168 aa9.98□□□□□ -0.81
COL17A1-201ENST00000353479 LINC00612Q8N6U2 182 aa9.98□□□□□ -0.81
COL17A1-201ENST00000353479 EPM2AB3EWF7 344 aa9.98□□□□□ -0.81
COL17A1-201ENST00000353479 CCDC179H3BU77 68 aa9.98□□□□□ -0.81
COL17A1-201ENST00000353479 WDFY4Q6ZS81 3184 aa9.97□□□□□ -0.81
COL17A1-201ENST00000353479 FAM168BA1KXE4 195 aa9.97□□□□□ -0.81
COL17A1-201ENST00000353479 TRBV7-6A0A0J9YX20 115 aa9.97□□□□□ -0.81
COL17A1-201ENST00000353479 Q6Q795 121 aa9.97□□□□□ -0.81
COL17A1-201ENST00000353479 ATRQ13535 2644 aa9.97□□□□□ -0.81
COL17A1-201ENST00000353479 TRAV7A0A075B6U4 112 aa9.96□□□□□ -0.82
COL17A1-201ENST00000353479 SPTSSBQ8NFR3 76 aa9.96□□□□□ -0.82
COL17A1-201ENST00000353479 FAM229AH3BQW9 127 aa9.95□□□□□ -0.82
COL17A1-201ENST00000353479 LITAFQ99732 161 aa9.95□□□□□ -0.82
COL17A1-201ENST00000353479 SPACA4Q8TDM5 124 aa9.95□□□□□ -0.82
COL17A1-201ENST00000353479 AKAP13Q12802 2813 aa9.94□□□□□ -0.82
COL17A1-201ENST00000353479 ST20-AS1Q8NBB2 130 aa9.94□□□□□ -0.82
COL17A1-201ENST00000353479 CFAP54Q96N23 3096 aa9.94□□□□□ -0.82
COL17A1-201ENST00000353479 MAST4O15021 2626 aa9.94□□□□□ -0.82
COL17A1-201ENST00000353479 XIRP2A4UGR9 3374 aa9.94□□□□□ -0.82
COL17A1-201ENST00000353479 PRR34Q9NV39 138 aa9.93□□□□□ -0.82
COL17A1-201ENST00000353479 VPREB1P12018 145 aa9.93□□□□□ -0.82
COL17A1-201ENST00000353479 HCG22E2RYF7 251 aa9.92□□□□□ -0.82
COL17A1-201ENST00000353479 ATP5EP56381 51 aaPredicted RBP9.92□□□□□ -0.82
COL17A1-201ENST00000353479 SERTAD4-AS1Q5TG53 156 aa9.92□□□□□ -0.82
COL17A1-201ENST00000353479 SMCPP49901 116 aaPredicted RBP9.9□□□□□ -0.82
COL17A1-201ENST00000353479 C15orf56Q8N910 161 aa9.9□□□□□ -0.82
COL17A1-201ENST00000353479 BCE1O60756 84 aa9.9□□□□□ -0.82
COL17A1-201ENST00000353479 PCOTHQ58A44 107 aa9.89□□□□□ -0.83
COL17A1-201ENST00000353479 LINC00476Q8WZB0 136 aa9.89□□□□□ -0.83
COL17A1-201ENST00000353479 CRYGAP11844 174 aa9.89□□□□□ -0.83
COL17A1-201ENST00000353479 TRIOO75962 3097 aa9.88□□□□□ -0.83
COL17A1-201ENST00000353479 IGLV6-57P01721 117 aa9.87□□□□□ -0.83
COL17A1-201ENST00000353479 H0Y9P7 68 aa9.87□□□□□ -0.83
COL17A1-201ENST00000353479 CXCL6P80162 114 aa9.87□□□□□ -0.83
COL17A1-201ENST00000353479 DSPP15924 2871 aaKnown RBP9.86□□□□□ -0.83
COL17A1-201ENST00000353479 PRR15LQ9BU68 103 aa9.86□□□□□ -0.83
COL17A1-201ENST00000353479 Q8NBF4 154 aa9.86□□□□□ -0.83
COL17A1-201ENST00000353479 TYMSOSQ8TAI1 123 aa9.86□□□□□ -0.83
COL17A1-201ENST00000353479 CR1P17927 2039 aa9.86□□□□□ -0.83
COL17A1-201ENST00000353479 APLNQ9ULZ1 77 aa9.85□□□□□ -0.83
COL17A1-201ENST00000353479 SERP1Q9Y6X1 66 aa9.85□□□□□ -0.83
COL17A1-201ENST00000353479 C1orf195Q5TG92 126 aa9.84□□□□□ -0.83
COL17A1-201ENST00000353479 IGLV1-50A0A075B6I6 118 aa9.84□□□□□ -0.83
COL17A1-201ENST00000353479 A0A087WTM6 91 aa9.83□□□□□ -0.84
COL17A1-201ENST00000353479 EIF4EBP3O60516 100 aaPredicted RBP9.83□□□□□ -0.84
COL17A1-201ENST00000353479 PRO0461Q9UI25 63 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms